Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003664.1

Orthogroup ID

OG0009495

Physical Location & Seq

Genomic Coordinates Forward (+)

5656 .. 7071

Gene Structure 1416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003664.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

atgctggagtctttgcttcagctcctccaacgcttcctgaaaagcccaaaccaaatcaaacaaatccattcccgcctaatcaccaacggtcatctccgtcgtaacccaaaccctaaattttcaaaatggaggacaaccctattctacaacactctgatcagagcccacctcggtttcggcgaagcgcacaaggctttttttctctttacccagatgctttcccaccaagcccaccccaacagccacacattccctccgctcgtcaaagccgtcgccgtcgccggcggcggtggctggccatgttacggcagagccctccacgcccaagttgtgaaacgcggcgtttggggtgacccggttgtgcagacgtcgtttgtgagcatgtatgctcggtttggtgaagtgtgggacgcacgcaaggtgttcgatgaaatgactgaaccgtgtgtggttgcgtgcaatgcgatgattgatgggttggggaagaatggggacatgggtggtgctgtttcgatgttcgaaaggatgccggagagggatgtggtttcgtggacgagtgtgattagtgggtttgggatgaatgggtggtttggtgagggggtttggtttttcaagaggatgatggggagtgaggatgtgaggggtggttttgtgaagccaaatgaagctacttttgttagtgtgctttcttcatgtgctaatttggatgggtggggatctctttattgggggaagcaaattcatgggcatgttgttaggaatgaggtgcagttgagtgtttttatggggactgcattggtggatctttatgggaagtcgggttgtttgagtggtgcttggaatgttttcgaggaaatgagggttaaagaagtttgtacatggaacgcaatgatctcagcgctttctttgaatggcagagagaaggaggctttggagttgtttgagaaaatgatggaaaagaggttgcggccgaatgaggttacatttgttgcagttctcacagcttgtgctcatgggaattcggtgaagtgtggtttggatttgtttaaatcaatgtccaaggactttggggttgaaccaataatggaacactatggttgtgtggttgatctcctcggcagagcaggactttttaaggaggcaactgaacttcttaagaacatgccttttgagcctgatgcttctgtgttgggggctcttttgggttcttgtaagattcatgggaccactgagctgggaaatgaagttgggaaaaaattgattgagttgcagccacagcattgtggacgatacttggttttgtcaaacatttatgctgcgaacgagaggtgggatcatgctgcttctgtgaggaaagcaatggtacatgctggaattcagaaaattccagcctttagtaggattgacgtaaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

471

Amino Acids

52.42

Weight (kDa)

8.86

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10330
fragaria_vesca	FvH4_6g42841
malus_domestica	MD09G1072300.v1.1
prunus_persica	Prupe.3G214500_v2.0.a1
pyrus_communis	pycom09g03390 pycom09g03410 pycom09g03420 pycom17g09460
rosa_chinensis	RchiOBHm_Chr2g0158781
rosa_laevigata	RLG00000021112 RLG00000025824
rosa_multiflora	Rmu_sc0003664.1_g000002 Rmu_sc0003664.1_g000004 Rmu_sc0038467.1_g000001 Rmu_sc0038467.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091010
rosa_rugosa	Rorug02G0472600
rosa_samantha	Rh2BG550900 Rh2CG521400 Rh2DG560700
rosa_wichuraiana	Rw2G044540 Rw3G001550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	371
AccBSI	CCGCTC	1 cut(s)	259
AccII	CGCG	1 cut(s)	339
AciI	CCGC	6 cut(s)	73, 257, 285, 288, 339, 967
AclWI	GGATC	3 cut(s)	724, 810, 1341
AcoI	YGGCCR	2 cut(s)	296, 968
AcsI	RAATTY	5 cut(s)	116, 738, 1018, 1374, 1383
AcyI	GRCGYC	1 cut(s)	368
AfaI	GTAC	2 cut(s)	877, 1365
AfeI	AGCGCT	1 cut(s)	900
AfiI	CCNNNNNNNGG	2 cut(s)	305, 1398
AflII	CTTAAG	1 cut(s)	1154
AgsI	TTSAA	4 cut(s)	123, 613, 910, 1076
AjuI	GAANNNNNNNTTGG	4 cut(s)	914, 946, 1019, 1051
AluBI	AGCT	4 cut(s)	22, 668, 1004, 1234
AluI	AGCT	4 cut(s)	22, 668, 1004, 1234
Alw21I	GWGCWC	1 cut(s)	1012
AlwI	GGATC	3 cut(s)	724, 810, 1341
Aor51HI	AGCGCT	1 cut(s)	900
AoxI	GGCC	2 cut(s)	296, 968
ApeKI	GCWGC	3 cut(s)	1270, 1316, 1340
ApoI	RAATTY	5 cut(s)	116, 738, 1018, 1374, 1383
Asp700I	GAANNNNTTC	1 cut(s)	845
AspLEI	GCGC	2 cut(s)	187, 901
AspS9I	GGNCC	1 cut(s)	1224
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	5 cut(s)	73, 362, 410, 605, 1036
AsuII	TTCGAA	1 cut(s)	519
AvaII	GGWCC	1 cut(s)	1224
BalI	TGGCCA	1 cut(s)	298
BanII	GRGCYC	3 cut(s)	166, 316, 1198
Bbv12I	GWGCWC	1 cut(s)	1012
BbvI	GCAGC	3 cut(s)	1282, 1303, 1327
BccI	CCATC	4 cut(s)	467, 616, 701, 946
BceAI	ACGGC	3 cut(s)	254, 260, 322
BcgI	CGANNNNNNTGC	2 cut(s)	406, 440
BclI	TGATCA	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	356
BfoI	RGCGCY	1 cut(s)	902
BfrI	CTTAAG	1 cut(s)	1154
BisI	GCNGC	6 cut(s)	286, 340, 968, 1271, 1317, 1341
BlsI	GCNGC	6 cut(s)	287, 341, 969, 1272, 1318, 1342
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	1224
BmgT120I	GGNCC	1 cut(s)	1224
BmiI	GGNNCC	1 cut(s)	1225
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	3 cut(s)	204, 516, 1168
BplI	GAGNNNNNCTC	2 cut(s)	153, 185
BpmI	CTGGAG	1 cut(s)	26
Bpu14I	TTCGAA	1 cut(s)	519
BpuMI	CCSGG	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	368
BsaJI	CCNNGG	3 cut(s)	169, 1059, 1114
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 1398
Bse118I	RCCGGY	1 cut(s)	281
Bse3DI	GCAATG	3 cut(s)	466, 894, 1365
BseDI	CCNNGG	3 cut(s)	169, 1059, 1114
BseGI	GGATG	6 cut(s)	531, 544, 582, 624, 640, 712
BseLI	CCNNNNNNNGG	2 cut(s)	305, 1398
BseMI	GCAATG	3 cut(s)	466, 894, 1365
BseMII	CTCAG	2 cut(s)	909, 1221
BseRI	GAGGAG	2 cut(s)	14, 1103
BseX3I	CGGCCG	1 cut(s)	968
BseXI	GCAGC	3 cut(s)	1282, 1303, 1327
BseYI	CCCAGC	1 cut(s)	1234
BsgI	GTGCAG	2 cut(s)	383, 788
Bsh1236I	CGCG	1 cut(s)	339
Bsh1285I	CGRYCG	1 cut(s)	971
BshFI	GGCC	2 cut(s)	298, 970
BsiEI	CGRYCG	1 cut(s)	971
BsiHKAI	GWGCWC	1 cut(s)	1012
BsiSI	CCGG	3 cut(s)	282, 356, 530
BslFI	GGGAC	4 cut(s)	422, 506, 802, 1237
BslI	CCNNNNNNNGG	2 cut(s)	305, 1398
BsmFI	GGGAC	4 cut(s)	422, 506, 802, 1237
BsnI	GGCC	2 cut(s)	298, 970
Bsp119I	TTCGAA	1 cut(s)	519
Bsp1286I	GDGCHC	4 cut(s)	166, 316, 1012, 1198
Bsp1407I	TGTACA	1 cut(s)	875
Bsp143I	GATC	6 cut(s)	156, 716, 802, 891, 1108, 1333
BspACI	CCGC	6 cut(s)	73, 257, 285, 288, 339, 967
BspANI	GGCC	2 cut(s)	298, 970
BspCNI	CTCAG	2 cut(s)	908, 1222
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	1225
BspPI	GGATC	3 cut(s)	724, 810, 1341
BspT104I	TTCGAA	1 cut(s)	519
BspTI	CTTAAG	1 cut(s)	1154
BsrBI	CCGCTC	1 cut(s)	259
BsrDI	GCAATG	3 cut(s)	466, 894, 1365
BsrFI	RCCGGY	1 cut(s)	281
BsrGI	TGTACA	1 cut(s)	875
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	3 cut(s)	169, 1059, 1114
BssMI	GATC	6 cut(s)	156, 716, 802, 891, 1108, 1333
BssNI	GRCGYC	1 cut(s)	368
BssT1I	CCWWGG	1 cut(s)	1059
Bst4CI	ACNGT	2 cut(s)	89, 444
BstACI	GRCGYC	1 cut(s)	368
BstAFI	CTTAAG	1 cut(s)	1154
BstAUI	TGTACA	1 cut(s)	875
BstBI	TTCGAA	1 cut(s)	519
BstC8I	GCNNGC	4 cut(s)	283, 296, 415, 457
BstDEI	CTNAG	2 cut(s)	895, 1230
BstEII	GGTNACC	1 cut(s)	350
BstENI	CCTNNNNNAGG	1 cut(s)	1396
BstF5I	GGATG	6 cut(s)	531, 544, 582, 624, 640, 712
BstFNI	CGCG	1 cut(s)	339
BstH2I	RGCGCY	1 cut(s)	902
BstHHI	GCGC	2 cut(s)	187, 901
BstKTI	GATC	6 cut(s)	159, 719, 805, 894, 1111, 1336
BstMBI	GATC	6 cut(s)	156, 716, 802, 891, 1108, 1333
BstMCI	CGRYCG	1 cut(s)	971
BstMWI	GCNNNNNNNGC	6 cut(s)	191, 291, 320, 461, 1171, 1276
BstNSI	RCATGY	4 cut(s)	385, 752, 1165, 1370
BstPI	GGTNACC	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	354
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	3 cut(s)	1282, 1303, 1327
BstX2I	RGATCY	2 cut(s)	716, 802
BstXI	CCANNNNNNTGG	1 cut(s)	1234
BstYI	RGATCY	2 cut(s)	716, 802
BstZI	CGGCCG	1 cut(s)	968
BsuRI	GGCC	2 cut(s)	298, 970
BtgZI	GCGATG	1 cut(s)	479
BtsCI	GGATG	6 cut(s)	531, 544, 582, 624, 640, 712
BtsIMutI	CAGTG	1 cut(s)	1227
Cac8I	GCNNGC	4 cut(s)	283, 296, 415, 457
CfoI	GCGC	2 cut(s)	187, 901
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	1224
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	876, 1364
CviQI	GTAC	2 cut(s)	876, 1364
DdeI	CTNAG	2 cut(s)	895, 1230
DpnI	GATC	6 cut(s)	158, 718, 804, 893, 1110, 1335
DpnII	GATC	6 cut(s)	156, 716, 802, 891, 1108, 1333
DraI	TTTAAA	1 cut(s)	1048
EaeI	YGGCCR	2 cut(s)	296, 968
EagI	CGGCCG	1 cut(s)	968
EclXI	CGGCCG	1 cut(s)	968
Eco130I	CCWWGG	1 cut(s)	1059
Eco24I	GRGCYC	3 cut(s)	166, 316, 1198
Eco47I	GGWCC	1 cut(s)	1224
Eco47III	AGCGCT	1 cut(s)	900
Eco52I	CGGCCG	1 cut(s)	968
Eco91I	GGTNACC	1 cut(s)	350
EcoNI	CCTNNNNNAGG	1 cut(s)	1396
EcoO65I	GGTNACC	1 cut(s)	350
EcoRI	GAATTC	2 cut(s)	1018, 1374
EcoT14I	CCWWGG	1 cut(s)	1059
EcoT38I	GRGCYC	3 cut(s)	166, 316, 1198
ErhI	CCWWGG	1 cut(s)	1059
FaqI	GGGAC	4 cut(s)	422, 506, 802, 1237
FauI	CCCGC	1 cut(s)	80
FbaI	TGATCA	1 cut(s)	156
Fnu4HI	GCNGC	6 cut(s)	286, 340, 968, 1271, 1317, 1341
FokI	GGATG	6 cut(s)	538, 551, 589, 631, 647, 719
FriOI	GRGCYC	3 cut(s)	166, 316, 1198
Fsp4HI	GCNGC	6 cut(s)	286, 340, 968, 1271, 1317, 1341
GlaI	GCGC	2 cut(s)	186, 900
GluI	GCNGC	6 cut(s)	286, 340, 968, 1271, 1317, 1341
GsaI	CCCAGC	1 cut(s)	1238
GsuI	CTGGAG	1 cut(s)	26
HaeII	RGCGCY	1 cut(s)	902
HaeIII	GGCC	2 cut(s)	298, 970
HapII	CCGG	3 cut(s)	282, 356, 530
HgaI	GACGC	1 cut(s)	419
HhaI	GCGC	2 cut(s)	187, 901
Hin1I	GRCGYC	1 cut(s)	368
Hin6I	GCGC	2 cut(s)	185, 899
HinP1I	GCGC	2 cut(s)	185, 899
HinfI	GANTC	2 cut(s)	8, 1216
HpaII	CCGG	3 cut(s)	282, 356, 530
HphI	GGTGA	5 cut(s)	73, 362, 410, 605, 1036
Hpy166II	GTNNAC	2 cut(s)	552, 1286
Hpy188I	TCNGA	3 cut(s)	156, 161, 1380
Hpy188III	TCNNGA	2 cut(s)	37, 613
Hpy8I	GTNNAC	2 cut(s)	552, 1286
Hpy99I	CGWCG	4 cut(s)	102, 275, 281, 373
HpyAV	CCTTC	1 cut(s)	916
HpyCH4III	ACNGT	2 cut(s)	89, 444
HpyCH4IV	ACGT	2 cut(s)	368, 1407
HpyCH4V	TGCA	6 cut(s)	364, 459, 769, 794, 992, 1270
HpyF10VI	GCNNNNNNNGC	6 cut(s)	191, 291, 320, 461, 1171, 1276
HpyF3I	CTNAG	2 cut(s)	895, 1230
HpySE526I	ACGT	2 cut(s)	368, 1407
Hsp92I	GRCGYC	1 cut(s)	368
HspAI	GCGC	2 cut(s)	185, 899
KroI	GCCGGC	1 cut(s)	281
KroNI	GCCGGC	1 cut(s)	283
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	6 cut(s)	156, 716, 802, 891, 1108, 1333
LmnI	GCTCC	1 cut(s)	27
Lsp1109I	GCAGC	3 cut(s)	1282, 1303, 1327
LweI	GCATC	3 cut(s)	204, 516, 1168
MaeII	ACGT	2 cut(s)	368, 1407
MaeIII	GTNAC	4 cut(s)	101, 302, 350, 979
MalI	GATC	6 cut(s)	158, 718, 804, 893, 1110, 1335
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	6 cut(s)	156, 716, 802, 891, 1108, 1333
MboII	GAAGA	2 cut(s)	496, 681
MflI	RGATCY	2 cut(s)	716, 802
MhlI	GDGCHC	4 cut(s)	166, 316, 1012, 1198
MlsI	TGGCCA	1 cut(s)	298
MluCI	AATT	7 cut(s)	116, 700, 738, 1018, 1256, 1374, 1383
MluNI	TGGCCA	1 cut(s)	298
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	52
Mox20I	TGGCCA	1 cut(s)	298
MreI	CGCCGGCG	1 cut(s)	281
MroNI	GCCGGC	1 cut(s)	281
MroXI	GAANNNNTTC	1 cut(s)	845
MscI	TGGCCA	1 cut(s)	298
MseI	TTAA	4 cut(s)	864, 1047, 1134, 1155
MslI	CAYNNNNRTG	1 cut(s)	747
Msp20I	TGGCCA	1 cut(s)	298
MspCI	CTTAAG	1 cut(s)	1154
MspI	CCGG	3 cut(s)	282, 356, 530
MspR9I	CCNGG	1 cut(s)	356
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	6 cut(s)	191, 291, 320, 461, 1171, 1276
NaeI	GCCGGC	1 cut(s)	283
NciI	CCSGG	1 cut(s)	356
NdeII	GATC	6 cut(s)	156, 716, 802, 891, 1108, 1333
NgoMIV	GCCGGC	1 cut(s)	281
NlaIV	GGNNCC	1 cut(s)	1225
NmeAIII	GCCGAG	1 cut(s)	1095
NmuCI	GTSAC	1 cut(s)	350
NspI	RCATGY	4 cut(s)	385, 752, 1165, 1370
NspV	TTCGAA	1 cut(s)	519
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 267
PdiI	GCCGGC	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	845
PfeI	GAWTC	1 cut(s)	1216
PkrI	GCNGC	6 cut(s)	287, 341, 969, 1272, 1318, 1342
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PspEI	GGTNACC	1 cut(s)	350
PspFI	CCCAGC	1 cut(s)	1234
PspN4I	GGNNCC	1 cut(s)	1225
PspPI	GGNCC	1 cut(s)	1224
PsuI	RGATCY	2 cut(s)	716, 802
RsaI	GTAC	2 cut(s)	877, 1365
RsaNI	GTAC	2 cut(s)	876, 1364
RseI	CAYNNNNRTG	1 cut(s)	747
SaqAI	TTAA	4 cut(s)	864, 1047, 1134, 1155
SatI	GCNGC	6 cut(s)	286, 340, 968, 1271, 1317, 1341
Sau3AI	GATC	6 cut(s)	156, 716, 802, 891, 1108, 1333
Sau96I	GGNCC	1 cut(s)	1224
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	4 cut(s)	166, 316, 1012, 1198
SfaNI	GCATC	3 cut(s)	204, 516, 1168
SfuI	TTCGAA	1 cut(s)	519
SgrAI	CRCCGGYG	1 cut(s)	281
SinI	GGWCC	1 cut(s)	1224
SmiMI	CAYNNNNRTG	1 cut(s)	747
SmlI	CTYRAG	1 cut(s)	1154
SmoI	CTYRAG	1 cut(s)	1154
Sse9I	AATT	7 cut(s)	116, 700, 738, 1018, 1256, 1374, 1383
SsiI	CCGC	6 cut(s)	73, 257, 285, 288, 339, 967
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	1059
TaaI	ACNGT	2 cut(s)	89, 444
TaiI	ACGT	2 cut(s)	371, 1410
TaqI	TCGA	4 cut(s)	426, 512, 519, 849
TasI	AATT	7 cut(s)	116, 700, 738, 1018, 1256, 1374, 1383
TatI	WGTACW	1 cut(s)	875
TauI	GCSGC	3 cut(s)	288, 342, 970
TfiI	GAWTC	1 cut(s)	1216
Tru1I	TTAA	4 cut(s)	864, 1047, 1134, 1155
Tru9I	TTAA	4 cut(s)	864, 1047, 1134, 1155
TscAI	CASTG	1 cut(s)	1234
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	3 cut(s)	1270, 1316, 1340
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	7 cut(s)	444, 593, 678, 681, 731, 1208, 1257
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	1234
Vha464I	CTTAAG	1 cut(s)	1154
VpaK11BI	GGWCC	1 cut(s)	1224
XagI	CCTNNNNNAGG	1 cut(s)	1396
XapI	RAATTY	5 cut(s)	116, 738, 1018, 1374, 1383
XceI	RCATGY	4 cut(s)	385, 752, 1165, 1370
XmnI	GAANNNNTTC	1 cut(s)	845
ZraI	GACGTC	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.