FvH4_6g43560

SPX and EXS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003754
Physical Location & Seq
Reverse (-)
33673403 .. 33680496
7094 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43560.t9

Sequence Viewer

Length: 1449 bp
ATGTTTGGAGGTCTTGCGACAGCTCCTTCCAATAGTCCGCACTTAAGAAAGTCGGGTAGCAGACCTGTTGTCTCTGATCTGGGTACAAGTGAACTTGAGAATGGTGCTGAGGAGGGTTTTGTGCATCTAATAGAGGGAGACGATCTGAAGGGTATAAGCACACCGTTGAGTATGAAGGGTGTAACCACACCATTGAGTACAGTTGCTATAATGCCATCTCCGACTTTTCTGTGGAGATTCAAGGTCCTGCTGTTCTTCACTTGGGGTTTCATTTGTTGCAAGATTGGATGGGATTCTGTCATGAGAATGAGTGTGGACTTGCGAGATTTATTTTTATACGAGGCATTTTTGTACTACAATCCTCTTCTTCTTGTGACTATGATGGTTTGGTTTTGGGGAATTAATCTATGGGTTTTCGCGCAGTCCAGTGTTAGTTATCCTAAAGTTTTCGATCTTGATCAAAATCATTTGACTCACGGAGAAATATGGAAGTGTGCCACATGGATGACCATTGTTGTGCCAACAAGCATGACAGCGTATCTTTATCTCTACTCACATGGAGAAGTGTCTCTGGCTGCATCACAACCAGTACTATTATATGCTGCAGTTGCAATGATTTTGATCTTCCCCTTTGATATCTTCTATCTGTCGTCTCGATTTTACTTTTTAAGGACTCTTTGGCGAATAGTTCTCCCTTTACAGGCAATAACCTTTTCTGACTTTTTCCTGGCCGATATTCTTACCTCCATGTCCAAGGTGCTTTCAGATTTGGAGCGATCAGTTTGTCGAATGCTCCATCGACAGGTTGCCACTATTGCATGGTTTGAAGCTGATTCAGTTTGTGGCAGTCACTCTGTTGCAATCCCTTTGGTTCTTGTGTTGCCTTATCTTTTTCGTTTGTTCCAATGCCTTCGACAATACAAGGATACTGGAGAGAAAACAACCCTTCTGAATGCTTTAAAGTATTCGACTGCAGTACCTGTGATTTTTCTCTCAGCCCTTAAATATCACGTCTTCCCAGAGAAGTGGACAAACTTCTATAGGCCCCTTTGGCTTCTCTCGGCCATTTTGAACTCTTTGTACTCATTTTATTGGGATGTGACTAGAGATTGGGACTTGAGTGGTTTCACTCGGATTTTCAAGTTCAACAAACCACATACCTTGTCAAACCTCATACATGGACGGAAATGGGTTTACTTCTGGGTGATAACTAGCAACTTAATACTGCGTTGTACATGGACGTATAAGCTGTCTGCCCATCTTCGGCACAATTATCTTACTGTATTTGCAATCACTGCCTTGGAGATTTTCCGCCGCTTTCAATGGGTTTTCTTCCGAGTAGAAAACGAGTGGATCAAGATGAGCTCGAAATCTAACTTTCAGCTTTCCATGAGTGACATCCCAAATGAGGAAGACAGGTTACTTAATTCTAATGGCCACAATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EXS

Protein Analysis

483

Amino Acids

55.93

Weight (kDa)

8.8

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXS PF03124 107 - 443 4.1e-94 EXS family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 419
AciI CCGC 3 cut(s) 38, 1312, 1315
AclWI GGATC 1 cut(s) 1361
AcoI YGGCCR 3 cut(s) 729, 1062, 1435
AcuI CTGAAG 1 cut(s) 167
AfaI GTAC 7 cut(s) 85, 199, 353, 591, 978, 1082, 1234
AfiI CCNNNNNNNGG 4 cut(s) 700, 802, 1263, 1408
AflII CTTAAG 1 cut(s) 43
AgsI TTSAA 6 cut(s) 241, 827, 1072, 1141, 1147, 1322
AhdI GACNNNNNGTC 1 cut(s) 68
AjiI CACGTC 1 cut(s) 1012
AjnI CCWGG 1 cut(s) 726
AluBI AGCT 5 cut(s) 23, 830, 1249, 1365, 1384
AluI AGCT 5 cut(s) 23, 830, 1249, 1365, 1384
Alw21I GWGCWC 1 cut(s) 1367
Alw26I GTCTC 4 cut(s) 76, 132, 573, 657
AlwI GGATC 1 cut(s) 1361
AlwNI CAGNNNCTG 1 cut(s) 980
AoxI GGCC 4 cut(s) 729, 1043, 1062, 1435
ApeKI GCWGC 2 cut(s) 575, 602
AseI ATTAAT 1 cut(s) 402
AspLEI GCGC 1 cut(s) 421
AspS9I GGNCC 2 cut(s) 244, 1044
AsuHPI GGTGA 1 cut(s) 1216
AvaII GGWCC 1 cut(s) 244
BaeI ACNNNNGTAYC 2 cut(s) 960, 993
BalI TGGCCA 1 cut(s) 1437
BanII GRGCYC 1 cut(s) 1367
BarI GAAGNNNNNNTAC 2 cut(s) 1404, 1436
BbsI GAAGAC 2 cut(s) 1006, 1419
Bbv12I GWGCWC 1 cut(s) 1367
BbvCI CCTCAGC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 562, 589
BccI CCATC 5 cut(s) 223, 282, 376, 804, 1266
BciT130I CCWGG 1 cut(s) 728
BciVI GTATCC 1 cut(s) 919
BclI TGATCA 1 cut(s) 457
BcoDI GTCTC 4 cut(s) 76, 132, 573, 657
BfaI CTAG 2 cut(s) 1104, 1212
BfmI CTRYAG 3 cut(s) 603, 972, 1039
BfrI CTTAAG 1 cut(s) 43
BfuI GTATCC 1 cut(s) 919
BglI GCCNNNNNGGC 1 cut(s) 1051
BisI GCNGC 3 cut(s) 576, 603, 1315
BlsI GCNGC 3 cut(s) 577, 604, 1316
BmcAI AGTACT 1 cut(s) 591
Bme1390I CCNGG 1 cut(s) 728
Bme18I GGWCC 1 cut(s) 244
BmeRI GACNNNNNGTC 1 cut(s) 68
BmgBI CACGTC 1 cut(s) 1012
BmgT120I GGNCC 2 cut(s) 244, 1044
BmiI GGNNCC 1 cut(s) 1046
BmrFI CCNGG 1 cut(s) 728
BmsI GCATC 2 cut(s) 133, 587
BpiI GAAGAC 2 cut(s) 1006, 1419
BpmI CTGGAG 1 cut(s) 951
Bpu10I CCTNAGC 1 cut(s) 108
BpuEI CTTGAG 2 cut(s) 116, 1138
BsaBI GATNNNNATC 3 cut(s) 456, 462, 620
BsaJI CCNNGG 2 cut(s) 753, 1299
Bsc4I CCNNNNNNNGG 4 cut(s) 700, 802, 1263, 1408
Bse1I ACTGG 3 cut(s) 426, 587, 934
Bse3DI GCAATG 1 cut(s) 618
Bse8I GATNNNNATC 3 cut(s) 456, 462, 620
BseBI CCWGG 1 cut(s) 728
BseDI CCNNGG 2 cut(s) 753, 1299
BseGI GGATG 4 cut(s) 293, 510, 1102, 1398
BseJI GATNNNNATC 3 cut(s) 456, 462, 620
BseLI CCNNNNNNNGG 4 cut(s) 700, 802, 1263, 1408
BseMI GCAATG 1 cut(s) 618
BseMII CTCAG 2 cut(s) 99, 1008
BseNI ACTGG 3 cut(s) 426, 587, 934
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 2 cut(s) 562, 589
Bsh1236I CGCG 1 cut(s) 419
BshFI GGCC 4 cut(s) 731, 1045, 1064, 1437
BsiHKAI GWGCWC 1 cut(s) 1367
BslFI GGGAC 1 cut(s) 1127
BslI CCNNNNNNNGG 4 cut(s) 700, 802, 1263, 1408
BsmAI GTCTC 4 cut(s) 76, 132, 573, 657
BsmBI CGTCTC 2 cut(s) 132, 657
BsmFI GGGAC 1 cut(s) 1127
BsmI GAATGC 2 cut(s) 795, 958
BsnI GGCC 4 cut(s) 731, 1045, 1064, 1437
Bsp1286I GDGCHC 1 cut(s) 1367
Bsp1407I TGTACA 1 cut(s) 1232
Bsp143I GATC 7 cut(s) 76, 142, 451, 457, 621, 776, 1353
BspACI CCGC 3 cut(s) 38, 1312, 1315
BspANI GGCC 4 cut(s) 731, 1045, 1064, 1437
BspCNI CTCAG 2 cut(s) 100, 1007
BspFNI CGCG 1 cut(s) 419
BspHI TCATGA 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 1046
BspMAI CTGCAG 2 cut(s) 607, 976
BspPI GGATC 1 cut(s) 1361
BspTI CTTAAG 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 618
BsrGI TGTACA 1 cut(s) 1232
BsrI ACTGG 3 cut(s) 426, 587, 934
BssECI CCNNGG 2 cut(s) 753, 1299
BssMI GATC 7 cut(s) 76, 142, 451, 457, 621, 776, 1353
BssT1I CCWWGG 2 cut(s) 753, 1299
Bst2UI CCWGG 1 cut(s) 728
Bst4CI ACNGT 3 cut(s) 165, 202, 1282
Bst6I CTCTTC 1 cut(s) 369
BstAFI CTTAAG 1 cut(s) 43
BstAPI GCANNNNNTGC 1 cut(s) 1295
BstAUI TGTACA 1 cut(s) 1232
BstDEI CTNAG 2 cut(s) 108, 994
BstF5I GGATG 4 cut(s) 293, 510, 1102, 1398
BstFNI CGCG 1 cut(s) 419
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 7 cut(s) 79, 145, 454, 460, 624, 779, 1356
BstMAI GTCTC 4 cut(s) 76, 132, 573, 657
BstMBI GATC 7 cut(s) 76, 142, 451, 457, 621, 776, 1353
BstMWI GCNNNNNNNGC 4 cut(s) 608, 815, 1051, 1295
BstNI CCWGG 1 cut(s) 728
BstSCI CCNGG 1 cut(s) 726
BstSFI CTRYAG 3 cut(s) 603, 972, 1039
BstUI CGCG 1 cut(s) 419
BstV1I GCAGC 2 cut(s) 562, 589
BstV2I GAAGAC 2 cut(s) 1006, 1419
BstXI CCANNNNNNTGG 1 cut(s) 1026
BsuI GTATCC 1 cut(s) 919
BsuRI GGCC 4 cut(s) 731, 1045, 1064, 1437
BtrI CACGTC 1 cut(s) 1012
BtsCI GGATG 4 cut(s) 293, 510, 1102, 1398
BtsI GCAGTG 1 cut(s) 1293
BtsIMutI CAGTG 2 cut(s) 433, 1293
CaiI CAGNNNCTG 1 cut(s) 980
CciI TCATGA 1 cut(s) 300
CfoI GCGC 1 cut(s) 421
Cfr13I GGNCC 2 cut(s) 244, 1044
Csp6I GTAC 7 cut(s) 84, 198, 352, 590, 977, 1081, 1233
CspCI CAANNNNNGTGG 2 cut(s) 1143, 1178
CviAII CATG 9 cut(s) 301, 501, 529, 557, 748, 819, 1178, 1236, 1390
CviQI GTAC 7 cut(s) 84, 198, 352, 590, 977, 1081, 1233
DdeI CTNAG 2 cut(s) 108, 994
DpnI GATC 7 cut(s) 78, 144, 453, 459, 623, 778, 1355
DpnII GATC 7 cut(s) 76, 142, 451, 457, 621, 776, 1353
DraI TTTAAA 1 cut(s) 960
DriI GACNNNNNGTC 1 cut(s) 68
EaeI YGGCCR 3 cut(s) 729, 1062, 1435
Eam1104I CTCTTC 1 cut(s) 369
Eam1105I GACNNNNNGTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 369
EciI GGCGGA 1 cut(s) 1301
Ecl136II GAGCTC 1 cut(s) 1365
Eco130I CCWWGG 2 cut(s) 753, 1299
Eco24I GRGCYC 1 cut(s) 1367
Eco32I GATATC 1 cut(s) 637
Eco47I GGWCC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 1365
Eco57I CTGAAG 1 cut(s) 167
EcoICRI GAGCTC 1 cut(s) 1365
EcoO109I RGGNCCY 2 cut(s) 244, 1044
EcoRII CCWGG 1 cut(s) 726
EcoRV GATATC 1 cut(s) 637
EcoT14I CCWWGG 2 cut(s) 753, 1299
EcoT38I GRGCYC 1 cut(s) 1367
ErhI CCWWGG 2 cut(s) 753, 1299
Esp3I CGTCTC 2 cut(s) 132, 657
FaeI CATG 9 cut(s) 304, 504, 532, 560, 751, 822, 1181, 1239, 1393
FaqI GGGAC 1 cut(s) 1127
FatI CATG 9 cut(s) 300, 500, 528, 556, 747, 818, 1177, 1235, 1389
FbaI TGATCA 1 cut(s) 457
Fnu4HI GCNGC 3 cut(s) 576, 603, 1315
FokI GGATG 4 cut(s) 300, 517, 1109, 1385
FriOI GRGCYC 1 cut(s) 1367
Fsp4HI GCNGC 3 cut(s) 576, 603, 1315
FspBI CTAG 2 cut(s) 1104, 1212
GlaI GCGC 1 cut(s) 420
GluI GCNGC 3 cut(s) 576, 603, 1315
GsuI CTGGAG 1 cut(s) 951
HaeIII GGCC 4 cut(s) 731, 1045, 1064, 1437
HhaI GCGC 1 cut(s) 421
Hin1II CATG 9 cut(s) 304, 504, 532, 560, 751, 822, 1181, 1239, 1393
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HinfI GANTC 5 cut(s) 237, 293, 472, 673, 833
HphI GGTGA 1 cut(s) 1216
Hpy166II GTNNAC 4 cut(s) 92, 316, 1029, 1195
Hpy188I TCNGA 8 cut(s) 76, 147, 222, 718, 766, 951, 1134, 1337
Hpy188III TCNNGA 4 cut(s) 301, 455, 654, 1357
Hpy8I GTNNAC 4 cut(s) 92, 316, 1029, 1195
HpyAV CCTTC 5 cut(s) 36, 142, 169, 920, 956
HpyCH4III ACNGT 3 cut(s) 165, 202, 1282
HpyCH4IV ACGT 2 cut(s) 1011, 1241
HpyCH4V TGCA 9 cut(s) 124, 279, 578, 605, 611, 818, 860, 974, 1289
HpyF10VI GCNNNNNNNGC 4 cut(s) 608, 815, 1051, 1295
HpyF3I CTNAG 2 cut(s) 108, 994
HpySE526I ACGT 2 cut(s) 1011, 1241
Hsp92II CATG 9 cut(s) 304, 504, 532, 560, 751, 822, 1181, 1239, 1393
HspAI GCGC 1 cut(s) 419
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 7 cut(s) 76, 142, 451, 457, 621, 776, 1353
LmnI GCTCC 3 cut(s) 28, 772, 798
Lsp1109I GCAGC 2 cut(s) 562, 589
LweI GCATC 2 cut(s) 133, 587
MaeI CTAG 2 cut(s) 1104, 1212
MaeII ACGT 2 cut(s) 1011, 1241
MaeIII GTNAC 6 cut(s) 181, 373, 848, 1099, 1394, 1419
MalI GATC 7 cut(s) 78, 144, 453, 459, 623, 778, 1355
MboI GATC 7 cut(s) 76, 142, 451, 457, 621, 776, 1353
MboII GAAGA 9 cut(s) 247, 356, 359, 616, 631, 1006, 1253, 1324, 1424
MhlI GDGCHC 1 cut(s) 1367
MlsI TGGCCA 1 cut(s) 1437
MluCI AATT 3 cut(s) 399, 1270, 1426
MluNI TGGCCA 1 cut(s) 1437
MlyI GAGTC 2 cut(s) 466, 667
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 8 cut(s) 103, 106, 127, 334, 372, 754, 1181, 1402
Mox20I TGGCCA 1 cut(s) 1437
MscI TGGCCA 1 cut(s) 1437
MseI TTAA 7 cut(s) 44, 402, 668, 959, 1002, 1220, 1425
MslI CAYNNNNRTG 3 cut(s) 305, 503, 515
Msp20I TGGCCA 1 cut(s) 1437
MspCI CTTAAG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 728
Mva1269I GAATGC 2 cut(s) 795, 958
MvaI CCWGG 1 cut(s) 728
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 4 cut(s) 608, 815, 1051, 1295
NdeII GATC 7 cut(s) 76, 142, 451, 457, 621, 776, 1353
NlaIII CATG 9 cut(s) 304, 504, 532, 560, 751, 822, 1181, 1239, 1393
NlaIV GGNNCC 1 cut(s) 1046
NmeAIII GCCGAG 1 cut(s) 1040
NmuCI GTSAC 4 cut(s) 373, 848, 1099, 1394
PagI TCATGA 1 cut(s) 300
PctI GAATGC 2 cut(s) 795, 958
PfeI GAWTC 3 cut(s) 237, 293, 833
PkrI GCNGC 3 cut(s) 577, 604, 1316
PleI GAGTC 2 cut(s) 466, 667
PpsI GAGTC 2 cut(s) 466, 667
PpuMI RGGWCCY 1 cut(s) 244
PshBI ATTAAT 1 cut(s) 402
Psp124BI GAGCTC 1 cut(s) 1367
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 726
PspGI CCWGG 1 cut(s) 726
PspN4I GGNNCC 1 cut(s) 1046
PspPI GGNCC 2 cut(s) 244, 1044
PspPPI RGGWCCY 1 cut(s) 244
PsrI GAACNNNNNNTAC 2 cut(s) 1064, 1096
PstI CTGCAG 2 cut(s) 607, 976
PstNI CAGNNNCTG 1 cut(s) 980
RsaI GTAC 7 cut(s) 85, 199, 353, 591, 978, 1082, 1234
RsaNI GTAC 7 cut(s) 84, 198, 352, 590, 977, 1081, 1233
RseI CAYNNNNRTG 3 cut(s) 305, 503, 515
SacI GAGCTC 1 cut(s) 1367
SaqAI TTAA 7 cut(s) 44, 402, 668, 959, 1002, 1220, 1425
SatI GCNGC 3 cut(s) 576, 603, 1315
Sau3AI GATC 7 cut(s) 76, 142, 451, 457, 621, 776, 1353
Sau96I GGNCC 2 cut(s) 244, 1044
ScaI AGTACT 1 cut(s) 591
SchI GAGTC 2 cut(s) 466, 667
ScrFI CCNGG 1 cut(s) 728
SduI GDGCHC 1 cut(s) 1367
SfaNI GCATC 2 cut(s) 133, 587
SfcI CTRYAG 3 cut(s) 603, 972, 1039
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 3 cut(s) 305, 503, 515
SmlI CTYRAG 3 cut(s) 43, 95, 1117
SmoI CTYRAG 3 cut(s) 43, 95, 1117
Sse9I AATT 3 cut(s) 399, 1270, 1426
SsiI CCGC 3 cut(s) 38, 1312, 1315
SspMI CTAG 2 cut(s) 1104, 1212
SstI GAGCTC 1 cut(s) 1367
StyD4I CCNGG 1 cut(s) 726
StyI CCWWGG 2 cut(s) 753, 1299
TaaI ACNGT 3 cut(s) 165, 202, 1282
TaiI ACGT 2 cut(s) 1014, 1244
TaqI TCGA 7 cut(s) 450, 655, 787, 799, 913, 968, 1367
TasI AATT 3 cut(s) 399, 1270, 1426
TatI WGTACW 5 cut(s) 197, 351, 589, 1080, 1232
TauI GCSGC 1 cut(s) 1317
TfiI GAWTC 3 cut(s) 237, 293, 833
Tru1I TTAA 7 cut(s) 44, 402, 668, 959, 1002, 1220, 1425
Tru9I TTAA 7 cut(s) 44, 402, 668, 959, 1002, 1220, 1425
TscAI CASTG 2 cut(s) 433, 1300
TseFI GTSAC 4 cut(s) 373, 848, 1099, 1394
TseI GCWGC 2 cut(s) 575, 602
Tsp45I GTSAC 4 cut(s) 373, 848, 1099, 1394
TspDTI ATGAA 2 cut(s) 188, 259
TspGWI ACGGA 2 cut(s) 492, 1198
TspRI CASTG 2 cut(s) 433, 1300
Vha464I CTTAAG 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 244
VspI ATTAAT 1 cut(s) 402
XspI CTAG 2 cut(s) 1104, 1212
ZrmI AGTACT 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.