Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003754

Physical Location & Seq

Genomic Coordinates Forward (+)

6755576 .. 6760082

Gene Structure 4507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g09010.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGTTTGGAGGTGTTGCGACAGCGCCTTCCAATAGTCCTCACTTAAGAAAGTCGGGTACAAGTGATCTCGAAAATGATGCAGAGGAGGGCTTCTTGCGTCTGATAGAGGGAAACGATAGGAAGGGAGGAAACGTGCCAAGCATACCAATGAGTACTGCTGCAATAATGCCATCTCCAGCTATGTTATGGAGATTTAAGGTCCTACTGTTCTTTGTATGGGGTTTCATTTGTTGCAAGGTTGGATGGGATTCTGTCATGAGGATGAGCGTGGATCTGCGAGATTTGTTTCTATATGAGGCATTTTTGTATTATAATCCTCTACTTCTTGTGACTATGATGGTTTGGTTTTGGGGAGTCAATCTATGGGTTTTTGCTCAGGGCAATGTAAACTATGCCAAAATTTTTGATCTTGATCAAAATCATTTGACCCACAGAGAAATATGGATGTGTGCGACCTGGATGACAATTGTTGTGCCGACAAGCATGACAGCATATCTTTATCTCTATTCGCATGGAGAAGTGTCACTTGCTGCATCACAACCAGTACTATTGTATGCTGCTGTTGCAATGCTTTTGATATTCCCTTTTGACATTTTCTATTTGTCATCTCGCTTTTACTTGTTAAGGACTCTTTGGCGTATAGTTCTCCCATTACAGGCAATATCATTTTCTGACTTTTTCCTGGCTGATATTTTGACCTCCATGTCTAAGGTGCTTTCAGATTTGGAGCGATCAGTATGTCGAATGGTCCATCGACAGGTTGCCACTATTGCATGGTTTGAAGCTGACTCAGTTTGTGGAAGTCATTCTGTTGCAATCCCTGTTGTTCTTGTTTTGCCTTACCTTTTTCGTTTGTTCCAATGTCTTCGACAATATAAGGATACTGGGGAGAAAACAACCCTTCTAAATGCTTTGAAGTATTCTACTGCAGTACCTGTGATTTTTCTTTCAGCCCTCAAATATCATGTCTTCCCTGAAAAGTGGACGACCTTTTATCGGCCCCTGTGGCTTCTCTCAGGTGTTTTGAACTCCTTGTACTCGTTCTACTGGGACGTGACTAGAGATTGGGACTTAAGTGGTTTCACTCGGATTTTCAAGTTCAGCAAACAACATTTCTCGTCAAACCTCATACATGGACGGAAATGGGTTTACTTCTGGGTGATAGGTAGCAACCTGATTCTGCGTTGTACCTGGACATACAAGCTCTCTTCCCACCTTCGCCACAATTACCTTACCGTGTTTGCAATCACTGCCTTGGAGATTTTCCGCCGCTTCCAATGGGTTTTCTTCCGTGTAGAAAACGAGGTGAACAAGATGAGCTCGAAGTCAAACATTCAGCTTTCCATGATAGACAACCCAAATGAGGAAGACAGATTACTCGTCTCTAATGGCCACAGCGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS

Protein Analysis

468

Amino Acids

54.25

Weight (kDa)

8.92

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32295 AT2G32295
fragaria_vesca	FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560
malus_domestica	MD09G1104800.v1.1 MD17G1092500.v1.1
prunus_persica	Prupe.3G220700_v2.0.a1 Prupe.3G220700_v2.0.a1 Prupe.3G220700_v2.0.a1 Prupe.3G220700_v2.0.a1 Prupe.3G220700_v2.0.a1
pyrus_communis	pycom09g02790 pycom17g09010
rosa_chinensis	RchiOBHm_Chr2g0160141
rosa_laevigata	RLG00000021199
rosa_multiflora	Rmu_sc0002023.1_g000002
rosa_roxburghii	Rroxscaffold_2G00090020
rosa_rugosa	Rorug02G0481100 Rorug02G0481200 Rorug02G0481300
rosa_samantha	Rh2AG547200 Rh2BG560500 Rh2CG530900 Rh2DG569200
rosa_wichuraiana	Rw2G045250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	312
AasI	GACNNNNNNGTC	1 cut(s)	703
AciI	CCGC	2 cut(s)	1267, 1270
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	1 cut(s)	1390
AcsI	RAATTY	1 cut(s)	399
AdeI	CACNNNGTG	1 cut(s)	1399
AfaI	GTAC	6 cut(s)	58, 154, 546, 933, 1037, 1189
AfiI	CCNNNNNNNGG	4 cut(s)	655, 757, 996, 1363
AflII	CTTAAG	2 cut(s)	43, 1072
AgsI	TTSAA	4 cut(s)	782, 916, 1027, 1096
AjiI	CACGTC	1 cut(s)	1054
AjnI	CCWGG	3 cut(s)	455, 681, 1190
AluBI	AGCT	5 cut(s)	179, 785, 1204, 1320, 1339
AluI	AGCT	5 cut(s)	179, 785, 1204, 1320, 1339
Alw21I	GWGCWC	1 cut(s)	1322
Alw26I	GTCTC	1 cut(s)	1387
AlwI	GGATC	1 cut(s)	279
AlwNI	CAGNNNCTG	1 cut(s)	935
AoxI	GGCC	2 cut(s)	998, 1390
ApeKI	GCWGC	3 cut(s)	158, 530, 557
ApoI	RAATTY	1 cut(s)	399
ArsI	GACNNNNNNTTYG	2 cut(s)	951, 983
Asp700I	GAANNNNTTC	1 cut(s)	805
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	3 cut(s)	199, 748, 999
AsuHPI	GGTGA	2 cut(s)	1171, 1318
AvaII	GGWCC	2 cut(s)	199, 748
BaeI	ACNNNNGTAYC	2 cut(s)	915, 948
BalI	TGGCCA	1 cut(s)	1392
BanII	GRGCYC	1 cut(s)	1322
BarI	GAAGNNNNNNTAC	2 cut(s)	1359, 1391
BbsI	GAAGAC	3 cut(s)	857, 961, 1374
Bbv12I	GWGCWC	1 cut(s)	1322
BbvI	GCAGC	3 cut(s)	145, 517, 544
BccI	CCATC	4 cut(s)	178, 237, 331, 759
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BciT130I	CCWGG	3 cut(s)	457, 683, 1192
BciVI	GTATCC	1 cut(s)	874
BclI	TGATCA	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	1387
BfaI	CTAG	1 cut(s)	1059
BfmI	CTRYAG	1 cut(s)	927
BfoI	RGCGCY	1 cut(s)	26
BfrI	CTTAAG	2 cut(s)	43, 1072
BfuI	GTATCC	1 cut(s)	874
BglI	GCCNNNNNGGC	1 cut(s)	1006
BisI	GCNGC	4 cut(s)	159, 531, 558, 1270
BlsI	GCNGC	4 cut(s)	160, 532, 559, 1271
BmcAI	AGTACT	2 cut(s)	154, 546
Bme1390I	CCNGG	3 cut(s)	457, 683, 1192
Bme18I	GGWCC	2 cut(s)	199, 748
BmgBI	CACGTC	1 cut(s)	1054
BmgT120I	GGNCC	3 cut(s)	199, 748, 999
BmiI	GGNNCC	1 cut(s)	1001
BmrFI	CCNGG	3 cut(s)	457, 683, 1192
BmrI	ACTGGG	2 cut(s)	894, 1057
BmsI	GCATC	2 cut(s)	67, 542
BmuI	ACTGGG	2 cut(s)	894, 1057
BpiI	GAAGAC	3 cut(s)	857, 961, 1374
BpmI	CTGGAG	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	375
BsaBI	GATNNNNATC	2 cut(s)	411, 417
BsaJI	CCNNGG	1 cut(s)	1254
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	4 cut(s)	655, 757, 996, 1363
Bse1I	ACTGG	3 cut(s)	542, 889, 1052
Bse3DI	GCAATG	2 cut(s)	388, 573
Bse8I	GATNNNNATC	2 cut(s)	411, 417
BseBI	CCWGG	3 cut(s)	457, 683, 1192
BseDI	CCNNGG	1 cut(s)	1254
BseGI	GGATG	4 cut(s)	248, 267, 450, 465
BseJI	GATNNNNATC	2 cut(s)	411, 417
BseLI	CCNNNNNNNGG	4 cut(s)	655, 757, 996, 1363
BseMI	GCAATG	2 cut(s)	388, 573
BseMII	CTCAG	3 cut(s)	389, 804, 1029
BseNI	ACTGG	3 cut(s)	542, 889, 1052
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	3 cut(s)	145, 517, 544
BshFI	GGCC	2 cut(s)	1000, 1392
BsiHKAI	GWGCWC	1 cut(s)	1322
BslFI	GGGAC	2 cut(s)	1064, 1082
BslI	CCNNNNNNNGG	4 cut(s)	655, 757, 996, 1363
BsmAI	GTCTC	1 cut(s)	1387
BsmBI	CGTCTC	1 cut(s)	1387
BsmFI	GGGAC	2 cut(s)	1064, 1082
BsnI	GGCC	2 cut(s)	1000, 1392
Bsp1286I	GDGCHC	1 cut(s)	1322
Bsp143I	GATC	5 cut(s)	64, 271, 406, 412, 731
BspACI	CCGC	2 cut(s)	1267, 1270
BspANI	GGCC	2 cut(s)	1000, 1392
BspCNI	CTCAG	3 cut(s)	388, 803, 1028
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	1001
BspMAI	CTGCAG	1 cut(s)	931
BspPI	GGATC	1 cut(s)	279
BspTI	CTTAAG	2 cut(s)	43, 1072
BsrDI	GCAATG	2 cut(s)	388, 573
BsrI	ACTGG	3 cut(s)	542, 889, 1052
BssECI	CCNNGG	1 cut(s)	1254
BssMI	GATC	5 cut(s)	64, 271, 406, 412, 731
BssT1I	CCWWGG	1 cut(s)	1254
Bst2UI	CCWGG	3 cut(s)	457, 683, 1192
Bst4CI	ACNGT	2 cut(s)	207, 1237
Bst6I	CTCTTC	1 cut(s)	1213
BstAFI	CTTAAG	2 cut(s)	43, 1072
BstAPI	GCANNNNNTGC	1 cut(s)	1250
BstDEI	CTNAG	4 cut(s)	375, 708, 790, 1015
BstF5I	GGATG	4 cut(s)	248, 267, 450, 465
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	5 cut(s)	67, 274, 409, 415, 734
BstMAI	GTCTC	1 cut(s)	1387
BstMBI	GATC	5 cut(s)	64, 271, 406, 412, 731
BstMWI	GCNNNNNNNGC	4 cut(s)	563, 770, 1006, 1250
BstNI	CCWGG	3 cut(s)	457, 683, 1192
BstSCI	CCNGG	3 cut(s)	455, 681, 1190
BstSFI	CTRYAG	1 cut(s)	927
BstV1I	GCAGC	3 cut(s)	145, 517, 544
BstV2I	GAAGAC	3 cut(s)	857, 961, 1374
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuI	GTATCC	1 cut(s)	874
BsuRI	GGCC	2 cut(s)	1000, 1392
BtrI	CACGTC	1 cut(s)	1054
BtsCI	GGATG	4 cut(s)	248, 267, 450, 465
BtsI	GCAGTG	1 cut(s)	1248
BtsIMutI	CAGTG	1 cut(s)	1248
CaiI	CAGNNNCTG	1 cut(s)	935
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	3 cut(s)	199, 748, 999
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	6 cut(s)	57, 153, 545, 932, 1036, 1188
CviAII	CATG	8 cut(s)	256, 484, 512, 703, 774, 965, 1133, 1345
CviQI	GTAC	6 cut(s)	57, 153, 545, 932, 1036, 1188
DdeI	CTNAG	4 cut(s)	375, 708, 790, 1015
DpnI	GATC	5 cut(s)	66, 273, 408, 414, 733
DpnII	GATC	5 cut(s)	64, 271, 406, 412, 731
DraIII	CACNNNGTG	1 cut(s)	1399
DrdI	GACNNNNNNGTC	1 cut(s)	703
DseDI	GACNNNNNNGTC	1 cut(s)	703
EaeI	YGGCCR	1 cut(s)	1390
Eam1104I	CTCTTC	1 cut(s)	1213
EarI	CTCTTC	1 cut(s)	1213
EciI	GGCGGA	1 cut(s)	1256
Ecl136II	GAGCTC	1 cut(s)	1320
Eco130I	CCWWGG	1 cut(s)	1254
Eco24I	GRGCYC	1 cut(s)	1322
Eco47I	GGWCC	2 cut(s)	199, 748
Eco53kI	GAGCTC	1 cut(s)	1320
EcoICRI	GAGCTC	1 cut(s)	1320
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRII	CCWGG	3 cut(s)	455, 681, 1190
EcoT14I	CCWWGG	1 cut(s)	1254
EcoT38I	GRGCYC	1 cut(s)	1322
ErhI	CCWWGG	1 cut(s)	1254
Esp3I	CGTCTC	1 cut(s)	1387
FaeI	CATG	8 cut(s)	259, 487, 515, 706, 777, 968, 1136, 1348
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FaqI	GGGAC	2 cut(s)	1064, 1082
FatI	CATG	8 cut(s)	255, 483, 511, 702, 773, 964, 1132, 1344
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	4 cut(s)	159, 531, 558, 1270
FokI	GGATG	4 cut(s)	255, 274, 457, 472
FriOI	GRGCYC	1 cut(s)	1322
Fsp4HI	GCNGC	4 cut(s)	159, 531, 558, 1270
FspBI	CTAG	1 cut(s)	1059
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	4 cut(s)	159, 531, 558, 1270
GsuI	CTGGAG	1 cut(s)	159
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	1000, 1392
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	8 cut(s)	259, 487, 515, 706, 777, 968, 1136, 1348
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	5 cut(s)	248, 354, 628, 788, 1177
HphI	GGTGA	2 cut(s)	1171, 1318
Hpy166II	GTNNAC	4 cut(s)	388, 984, 1150, 1309
Hpy188I	TCNGA	4 cut(s)	102, 673, 721, 1089
Hpy188III	TCNNGA	3 cut(s)	68, 256, 410
Hpy8I	GTNNAC	4 cut(s)	388, 984, 1150, 1309
HpyAV	CCTTC	4 cut(s)	36, 115, 911, 1226
HpyCH4III	ACNGT	2 cut(s)	207, 1237
HpyCH4IV	ACGT	2 cut(s)	132, 1053
HpyCH4V	TGCA	9 cut(s)	80, 161, 234, 533, 566, 773, 815, 929, 1244
HpyF10VI	GCNNNNNNNGC	4 cut(s)	563, 770, 1006, 1250
HpyF3I	CTNAG	4 cut(s)	375, 708, 790, 1015
HpySE526I	ACGT	2 cut(s)	132, 1053
Hsp92II	CATG	8 cut(s)	259, 487, 515, 706, 777, 968, 1136, 1348
HspAI	GCGC	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	5 cut(s)	64, 271, 406, 412, 731
LmnI	GCTCC	1 cut(s)	727
Lsp1109I	GCAGC	3 cut(s)	145, 517, 544
LweI	GCATC	2 cut(s)	67, 542
MaeI	CTAG	1 cut(s)	1059
MaeII	ACGT	2 cut(s)	132, 1053
MaeIII	GTNAC	3 cut(s)	328, 522, 1054
MalI	GATC	5 cut(s)	66, 273, 408, 414, 733
MboI	GATC	5 cut(s)	64, 271, 406, 412, 731
MboII	GAAGA	5 cut(s)	857, 961, 1200, 1279, 1379
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	1322
MlsI	TGGCCA	1 cut(s)	1392
MluCI	AATT	3 cut(s)	399, 465, 1225
MluNI	TGGCCA	1 cut(s)	1392
MlyI	GAGTC	3 cut(s)	363, 622, 782
MmeI	TCCRAC	1 cut(s)	220
Mox20I	TGGCCA	1 cut(s)	1392
MroXI	GAANNNNTTC	1 cut(s)	805
MscI	TGGCCA	1 cut(s)	1392
MseI	TTAA	4 cut(s)	44, 195, 623, 1073
MslI	CAYNNNNRTG	2 cut(s)	146, 260
Msp20I	TGGCCA	1 cut(s)	1392
MspCI	CTTAAG	2 cut(s)	43, 1072
MspR9I	CCNGG	3 cut(s)	457, 683, 1192
MunI	CAATTG	1 cut(s)	465
MvaI	CCWGG	3 cut(s)	457, 683, 1192
MwoI	GCNNNNNNNGC	4 cut(s)	563, 770, 1006, 1250
NdeII	GATC	5 cut(s)	64, 271, 406, 412, 731
NlaIII	CATG	8 cut(s)	259, 487, 515, 706, 777, 968, 1136, 1348
NlaIV	GGNNCC	1 cut(s)	1001
NmuCI	GTSAC	3 cut(s)	328, 522, 1054
PagI	TCATGA	1 cut(s)	255
PdmI	GAANNNNTTC	1 cut(s)	805
PfeI	GAWTC	2 cut(s)	248, 1177
PkrI	GCNGC	4 cut(s)	160, 532, 559, 1271
PleI	GAGTC	3 cut(s)	362, 622, 782
PpsI	GAGTC	3 cut(s)	362, 622, 782
PpuMI	RGGWCCY	1 cut(s)	199
PsiI	TTATAA	1 cut(s)	312
Psp124BI	GAGCTC	1 cut(s)	1322
Psp5II	RGGWCCY	1 cut(s)	199
Psp6I	CCWGG	3 cut(s)	455, 681, 1190
PspGI	CCWGG	3 cut(s)	455, 681, 1190
PspN4I	GGNNCC	1 cut(s)	1001
PspPI	GGNCC	3 cut(s)	199, 748, 999
PspPPI	RGGWCCY	1 cut(s)	199
PsrI	GAACNNNNNNTAC	2 cut(s)	1019, 1051
PstI	CTGCAG	1 cut(s)	931
PstNI	CAGNNNCTG	1 cut(s)	935
PsuI	RGATCY	1 cut(s)	271
RsaI	GTAC	6 cut(s)	58, 154, 546, 933, 1037, 1189
RsaNI	GTAC	6 cut(s)	57, 153, 545, 932, 1036, 1188
RseI	CAYNNNNRTG	2 cut(s)	146, 260
SacI	GAGCTC	1 cut(s)	1322
SaqAI	TTAA	4 cut(s)	44, 195, 623, 1073
SatI	GCNGC	4 cut(s)	159, 531, 558, 1270
Sau3AI	GATC	5 cut(s)	64, 271, 406, 412, 731
Sau96I	GGNCC	3 cut(s)	199, 748, 999
ScaI	AGTACT	2 cut(s)	154, 546
SchI	GAGTC	3 cut(s)	363, 622, 782
ScrFI	CCNGG	3 cut(s)	457, 683, 1192
SduI	GDGCHC	1 cut(s)	1322
SfaNI	GCATC	2 cut(s)	67, 542
SfcI	CTRYAG	1 cut(s)	927
SinI	GGWCC	2 cut(s)	199, 748
SmiMI	CAYNNNNRTG	2 cut(s)	146, 260
SmlI	CTYRAG	2 cut(s)	43, 1072
SmoI	CTYRAG	2 cut(s)	43, 1072
Sse9I	AATT	3 cut(s)	399, 465, 1225
SsiI	CCGC	2 cut(s)	1267, 1270
SspMI	CTAG	1 cut(s)	1059
SstI	GAGCTC	1 cut(s)	1322
StyD4I	CCNGG	3 cut(s)	455, 681, 1190
StyI	CCWWGG	1 cut(s)	1254
TaaI	ACNGT	2 cut(s)	207, 1237
TaiI	ACGT	2 cut(s)	135, 1056
TaqI	TCGA	5 cut(s)	69, 742, 754, 868, 1322
TasI	AATT	3 cut(s)	399, 465, 1225
TatI	WGTACW	3 cut(s)	152, 544, 1035
TauI	GCSGC	1 cut(s)	1272
TfiI	GAWTC	2 cut(s)	248, 1177
Tru1I	TTAA	4 cut(s)	44, 195, 623, 1073
Tru9I	TTAA	4 cut(s)	44, 195, 623, 1073
TscAI	CASTG	1 cut(s)	1255
TseFI	GTSAC	3 cut(s)	328, 522, 1054
TseI	GCWGC	3 cut(s)	158, 530, 557
Tsp45I	GTSAC	3 cut(s)	328, 522, 1054
TspDTI	ATGAA	1 cut(s)	214
TspGWI	ACGGA	2 cut(s)	1153, 1280
TspRI	CASTG	1 cut(s)	1255
Vha464I	CTTAAG	2 cut(s)	43, 1072
VpaK11BI	GGWCC	2 cut(s)	199, 748
XapI	RAATTY	1 cut(s)	399
XcmI	CCANNNNNNNNNTGG	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	805
XspI	CTAG	1 cut(s)	1059
ZrmI	AGTACT	2 cut(s)	154, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.