Rorug02G0481300

SPX and EXS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003754
Physical Location & Seq
Reverse (-)
61160719 .. 61164411
3693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0481300.1

Sequence Viewer

Length: 1212 bp
ATGAGGAACCGCTCGACAACCCCACCGCCACTCCCACCGGCGAAACGTTTATGCATCGATAGGCATGTGATGGGTTATCTCTCGGACAGCGAGATCTCGGTACGAGGTGGTAGCTGTTCTCTTAGCAAGGCAGAAGGACCAGAGGCAGCCTTCCTAAAGGGTGAAGAAGGACCAGAGGCAGCCCTAAAGGGTGAAGAAAAACCAAAGGCTGCTGGTTACTATTGGTTTAAACTCAAGCTTGGAGAACCTCTTACCTCTGAAGAGGAGGCAAAGGCTGCTGATTACAGTTTGGAGGACCTCCTCGATGAAGGTCTCGGATTTTGTACAATTTGTGGTCAGGAGGACCACTGGGTTTACTGTTGTGAGAAATACTATGAGGAATATAAATGTCCATACGGGACTAACTTCATTCCCCCAGGCATTAACCAACATGACAAGATGCCGTCTGATGTCTGGACTGACTCAGATCAAGAGCATTTGGATCTTTTGTGCATCGAAGATTATGTCCCAGAGGGCTTCGAGTACCTGCATACGGTCAGTGAAATAAAAAACATACATAGAATTATGATTCAGCAGCACAACGAGATCAAGGATTACGTTAGCTCCGGAATCGAGCCCGATTGTGCGGTAAGAAAGACCAGTGGTGAGTCTGACGATGAAGCATGCAATGAAGGACGAGGACAAGGATGTGGATTGAAGATCCTGATTTTGACGTTCATTCTTGACAAGTTGGGCCATGATGACAATGATGACAAAGCCAACCAGACGCTGAGTTCCCTCTTGCAAAAAAAGAAGCAGCTTTTGTTGGGTAAACGTTATCTGATTGTGTTGGATGGTGTTTGGCATATGAATGCCTTCTATTGCTCTTTAGGGAATGACAATGTCAACGGCATGGATCGCCTATCGGATGGCTTGCCTAAGCATAGCCGCGGTGCGGTGATCGTCACTAGTAGGAGGCTGGAAGTGGCTCAACAAATGGTGGGCGCAGATAACTTGATTATTCCTGTCAGGCCTATGGACAAACAAAACTGCTGTAGAGAGGAAAAGTTAAGCGAACTAGCTCCTGCAAAAGCTTTGAATAGGATCAAGGATCAAATTGAGGAGGAATTTCAGGGTCTACCATTGGCTGCTAAGGTACTCGCAACCGCCATTCCTGGACACATTCGTACAAGAGATGCAGGAAGGTTCCCAATAGAGTTTGAGTTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EXS

Protein Analysis

403

Amino Acids

45.08

Weight (kDa)

5.09

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 236 - 337 5.4e-08 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 534
AccBSI CCGCTC 1 cut(s) 12
AccI GTMKAC 1 cut(s) 1117
AccII CGCG 1 cut(s) 930
AccIII TCCGGA 1 cut(s) 605
AciI CCGC 7 cut(s) 10, 26, 626, 928, 930, 935, 1146
AclI AACGTT 2 cut(s) 46, 814
AclWI GGATC 5 cut(s) 489, 694, 903, 1091, 1098
AcsI RAATTY 1 cut(s) 1106
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 5 cut(s) 102, 325, 524, 1137, 1168
AfiI CCNNNNNNNGG 2 cut(s) 532, 934
AgsI TTSAA 2 cut(s) 697, 1078
AhlI ACTAGT 1 cut(s) 947
AjnI CCWGG 2 cut(s) 415, 1153
AluBI AGCT 6 cut(s) 114, 238, 603, 799, 1061, 1073
AluI AGCT 6 cut(s) 114, 238, 603, 799, 1061, 1073
Alw26I GTCTC 1 cut(s) 317
AlwI GGATC 5 cut(s) 489, 694, 903, 1091, 1098
AlwNI CAGNNNCTG 1 cut(s) 769
Aor13HI TCCGGA 1 cut(s) 605
AoxI GGCC 2 cut(s) 733, 1010
ApeKI GCWGC 7 cut(s) 146, 179, 209, 275, 574, 796, 1127
ApoI RAATTY 1 cut(s) 1106
ArsI GACNNNNNNTTYG 2 cut(s) 489, 521
Asp700I GAANNNNTTC 1 cut(s) 854
AspLEI GCGC 1 cut(s) 986
AspS9I GGNCC 5 cut(s) 137, 170, 295, 343, 733
AsuHPI GGTGA 4 cut(s) 173, 203, 656, 949
AvaII GGWCC 4 cut(s) 137, 170, 295, 343
BanII GRGCYC 1 cut(s) 618
BbvI GCAGC 7 cut(s) 158, 191, 196, 262, 586, 808, 1114
BccI CCATC 3 cut(s) 64, 827, 902
BceAI ACGGC 2 cut(s) 427, 904
BciT130I CCWGG 2 cut(s) 417, 1155
BcoDI GTCTC 1 cut(s) 317
BcuI ACTAGT 1 cut(s) 947
BfaI CTAG 2 cut(s) 948, 1058
BfmI CTRYAG 1 cut(s) 1033
BfuAI ACCTGC 1 cut(s) 534
BglII AGATCT 1 cut(s) 93
BisI GCNGC 8 cut(s) 147, 180, 210, 276, 575, 797, 928, 1128
BlsI GCNGC 8 cut(s) 148, 181, 211, 277, 576, 798, 929, 1129
Bme1390I CCNGG 2 cut(s) 417, 1155
Bme18I GGWCC 4 cut(s) 137, 170, 295, 343
BmgT120I GGNCC 5 cut(s) 137, 170, 295, 343, 733
BmiI GGNNCC 2 cut(s) 8, 1187
BmrFI CCNGG 2 cut(s) 417, 1155
BmrI ACTGGG 1 cut(s) 358
BmsI GCATC 4 cut(s) 63, 429, 501, 1165
BmuI ACTGGG 1 cut(s) 358
Bpu10I CCTNAGC 2 cut(s) 918, 1131
BpuEI CTTGAG 1 cut(s) 218
Bsa29I ATCGAT 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 415, 928
BsaWI WCCGGW 1 cut(s) 605
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 587, 617
Bsc4I CCNNNNNNNGG 2 cut(s) 532, 934
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 2 cut(s) 353, 639
Bse3DI GCAATG 1 cut(s) 673
BseAI TCCGGA 1 cut(s) 605
BseBI CCWGG 2 cut(s) 417, 1155
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 415, 928
BseGI GGATG 3 cut(s) 692, 838, 913
BseLI CCNNNNNNNGG 2 cut(s) 532, 934
BseMI GCAATG 1 cut(s) 673
BseMII CTCAG 2 cut(s) 477, 761
BseNI ACTGG 2 cut(s) 353, 639
BseRI GAGGAG 3 cut(s) 278, 290, 1115
BseXI GCAGC 7 cut(s) 158, 191, 196, 262, 586, 808, 1114
Bsh1236I CGCG 1 cut(s) 930
BshFI GGCC 2 cut(s) 735, 1012
BshVI ATCGAT 1 cut(s) 57
BsiSI CCGG 2 cut(s) 38, 606
BslFI GGGAC 2 cut(s) 412, 491
BslI CCNNNNNNNGG 2 cut(s) 532, 934
BsmAI GTCTC 1 cut(s) 317
BsmFI GGGAC 2 cut(s) 412, 491
BsmI GAATGC 1 cut(s) 856
BsnI GGCC 2 cut(s) 735, 1012
Bso31I GGTCTC 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 618
Bsp13I TCCGGA 1 cut(s) 605
Bsp1407I TGTACA 1 cut(s) 323
Bsp143I GATC 9 cut(s) 93, 466, 481, 585, 699, 895, 939, 1083, 1090
BspACI CCGC 7 cut(s) 10, 26, 626, 928, 930, 935, 1146
BspANI GGCC 2 cut(s) 735, 1012
BspCNI CTCAG 2 cut(s) 476, 762
BspDI ATCGAT 1 cut(s) 57
BspEI TCCGGA 1 cut(s) 605
BspFNI CGCG 1 cut(s) 930
BspLI GGNNCC 2 cut(s) 8, 1187
BspMI ACCTGC 1 cut(s) 534
BspPI GGATC 5 cut(s) 489, 694, 903, 1091, 1098
BspTNI GGTCTC 1 cut(s) 317
BsrBI CCGCTC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 673
BsrFI RCCGGY 1 cut(s) 37
BsrGI TGTACA 1 cut(s) 323
BsrI ACTGG 2 cut(s) 353, 639
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 2 cut(s) 415, 928
BssMI GATC 9 cut(s) 93, 466, 481, 585, 699, 895, 939, 1083, 1090
Bst2UI CCWGG 2 cut(s) 417, 1155
Bst4CI ACNGT 3 cut(s) 287, 359, 535
Bst6I CTCTTC 1 cut(s) 255
BstAPI GCANNNNNTGC 1 cut(s) 275
BstAUI TGTACA 1 cut(s) 323
BstC8I GCNNGC 2 cut(s) 664, 914
BstDEI CTNAG 5 cut(s) 122, 463, 770, 918, 1131
BstDSI CCRYGG 1 cut(s) 928
BstF5I GGATG 3 cut(s) 692, 838, 913
BstFNI CGCG 1 cut(s) 930
BstHHI GCGC 1 cut(s) 986
BstKTI GATC 9 cut(s) 96, 469, 484, 588, 702, 898, 942, 1086, 1093
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 9 cut(s) 93, 466, 481, 585, 699, 895, 939, 1083, 1090
BstMWI GCNNNNNNNGC 2 cut(s) 275, 897
BstNI CCWGG 2 cut(s) 417, 1155
BstNSI RCATGY 2 cut(s) 68, 666
BstSCI CCNGG 2 cut(s) 415, 1153
BstSFI CTRYAG 1 cut(s) 1033
BstUI CGCG 1 cut(s) 930
BstV1I GCAGC 7 cut(s) 158, 191, 196, 262, 586, 808, 1114
BstX2I RGATCY 3 cut(s) 93, 481, 699
BstYI RGATCY 3 cut(s) 93, 481, 699
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 2 cut(s) 735, 1012
BsuTUI ATCGAT 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 928
BtsCI GGATG 3 cut(s) 692, 838, 913
BtsIMutI CAGTG 3 cut(s) 346, 544, 646
BveI ACCTGC 1 cut(s) 534
Cac8I GCNNGC 2 cut(s) 664, 914
CaiI CAGNNNCTG 1 cut(s) 769
CfoI GCGC 1 cut(s) 986
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 5 cut(s) 137, 170, 295, 343, 733
Cfr42I CCGCGG 1 cut(s) 931
ClaI ATCGAT 1 cut(s) 57
CseI GACGC 1 cut(s) 775
Csp6I GTAC 5 cut(s) 101, 324, 523, 1136, 1167
CviAII CATG 5 cut(s) 65, 431, 663, 737, 892
CviQI GTAC 5 cut(s) 101, 324, 523, 1136, 1167
DdeI CTNAG 5 cut(s) 122, 463, 770, 918, 1131
DpnI GATC 9 cut(s) 95, 468, 483, 587, 701, 897, 941, 1085, 1092
DpnII GATC 9 cut(s) 93, 466, 481, 585, 699, 895, 939, 1083, 1090
DraI TTTAAA 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco147I AGGCCT 1 cut(s) 1012
Eco24I GRGCYC 1 cut(s) 618
Eco31I GGTCTC 1 cut(s) 317
Eco47I GGWCC 4 cut(s) 137, 170, 295, 343
Eco57I CTGAAG 1 cut(s) 279
EcoO109I RGGNCCY 1 cut(s) 295
EcoRII CCWGG 2 cut(s) 415, 1153
EcoT22I ATGCAT 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 618
FaeI CATG 5 cut(s) 68, 434, 666, 740, 895
FaqI GGGAC 2 cut(s) 412, 491
FatI CATG 5 cut(s) 64, 430, 662, 736, 891
FauNDI CATATG 1 cut(s) 846
FblI GTMKAC 1 cut(s) 1117
Fnu4HI GCNGC 8 cut(s) 147, 180, 210, 276, 575, 797, 928, 1128
FokI GGATG 3 cut(s) 699, 845, 920
FriOI GRGCYC 1 cut(s) 618
Fsp4HI GCNGC 8 cut(s) 147, 180, 210, 276, 575, 797, 928, 1128
FspBI CTAG 2 cut(s) 948, 1058
GlaI GCGC 1 cut(s) 985
GluI GCNGC 8 cut(s) 147, 180, 210, 276, 575, 797, 928, 1128
HaeIII GGCC 2 cut(s) 735, 1012
HapII CCGG 2 cut(s) 38, 606
HgaI GACGC 1 cut(s) 775
HhaI GCGC 1 cut(s) 986
Hin1II CATG 5 cut(s) 68, 434, 666, 740, 895
Hin6I GCGC 1 cut(s) 984
HinP1I GCGC 1 cut(s) 984
HincII GTYRAC 1 cut(s) 886
HindII GTYRAC 1 cut(s) 886
HindIII AAGCTT 2 cut(s) 236, 1071
HinfI GANTC 4 cut(s) 461, 568, 609, 647
HpaII CCGG 2 cut(s) 38, 606
HphI GGTGA 4 cut(s) 173, 203, 656, 949
Hpy166II GTNNAC 4 cut(s) 355, 812, 886, 1118
Hpy188I TCNGA 8 cut(s) 85, 259, 317, 448, 466, 652, 822, 907
Hpy188III TCNNGA 6 cut(s) 338, 454, 470, 606, 703, 722
Hpy8I GTNNAC 4 cut(s) 355, 812, 886, 1118
HpyAV CCTTC 7 cut(s) 128, 160, 161, 302, 665, 865, 1176
HpyCH4III ACNGT 3 cut(s) 287, 359, 535
HpyCH4IV ACGT 4 cut(s) 46, 597, 713, 814
HpyCH4V TGCA 7 cut(s) 54, 492, 529, 666, 784, 1067, 1178
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 897
HpyF3I CTNAG 5 cut(s) 122, 463, 770, 918, 1131
HpySE526I ACGT 4 cut(s) 46, 597, 713, 814
Hsp92II CATG 5 cut(s) 68, 434, 666, 740, 895
HspAI GCGC 1 cut(s) 984
Kpn2I TCCGGA 1 cut(s) 605
KspI CCGCGG 1 cut(s) 931
Kzo9I GATC 9 cut(s) 93, 466, 481, 585, 699, 895, 939, 1083, 1090
LmnI GCTCC 2 cut(s) 608, 1066
Lsp1109I GCAGC 7 cut(s) 158, 191, 196, 262, 586, 808, 1114
LweI GCATC 4 cut(s) 63, 429, 501, 1165
MaeI CTAG 2 cut(s) 948, 1058
MaeII ACGT 4 cut(s) 46, 597, 713, 814
MaeIII GTNAC 2 cut(s) 215, 943
MalI GATC 9 cut(s) 95, 468, 483, 587, 701, 897, 941, 1085, 1092
MbiI CCGCTC 1 cut(s) 12
MboI GATC 9 cut(s) 93, 466, 481, 585, 699, 895, 939, 1083, 1090
MboII GAAGA 5 cut(s) 176, 206, 272, 509, 709
MflI RGATCY 3 cut(s) 93, 481, 699
MhlI GDGCHC 1 cut(s) 618
MluCI AATT 4 cut(s) 327, 561, 1095, 1106
MlyI GAGTC 2 cut(s) 455, 656
MmeI TCCRAC 1 cut(s) 810
Mph1103I ATGCAT 1 cut(s) 56
MroI TCCGGA 1 cut(s) 605
MroXI GAANNNNTTC 1 cut(s) 854
MseI TTAA 4 cut(s) 228, 423, 1049, 1210
MslI CAYNNNNRTG 1 cut(s) 849
MspA1I CMGCKG 1 cut(s) 930
MspI CCGG 2 cut(s) 38, 606
MspR9I CCNGG 2 cut(s) 417, 1155
MssI GTTTAAAC 1 cut(s) 229
Mva1269I GAATGC 1 cut(s) 856
MvaI CCWGG 2 cut(s) 417, 1155
MvnI CGCG 1 cut(s) 930
MwoI GCNNNNNNNGC 2 cut(s) 275, 897
NdeI CATATG 1 cut(s) 846
NdeII GATC 9 cut(s) 93, 466, 481, 585, 699, 895, 939, 1083, 1090
NlaIII CATG 5 cut(s) 68, 434, 666, 740, 895
NlaIV GGNNCC 2 cut(s) 8, 1187
NmuCI GTSAC 1 cut(s) 943
NsiI ATGCAT 1 cut(s) 56
NspI RCATGY 2 cut(s) 68, 666
PaeI GCATGC 1 cut(s) 666
PceI AGGCCT 1 cut(s) 1012
PctI GAATGC 1 cut(s) 856
PdmI GAANNNNTTC 1 cut(s) 854
PfeI GAWTC 2 cut(s) 568, 609
PflFI GACNNNGTC 1 cut(s) 881
PfoI TCCNGGA 1 cut(s) 1153
PkrI GCNGC 8 cut(s) 148, 181, 211, 277, 576, 798, 929, 1129
PleI GAGTC 2 cut(s) 455, 655
PmeI GTTTAAAC 1 cut(s) 229
PpsI GAGTC 2 cut(s) 455, 655
PpuMI RGGWCCY 1 cut(s) 295
Psp1406I AACGTT 2 cut(s) 46, 814
Psp5II RGGWCCY 1 cut(s) 295
Psp6I CCWGG 2 cut(s) 415, 1153
PspGI CCWGG 2 cut(s) 415, 1153
PspN4I GGNNCC 2 cut(s) 8, 1187
PspPI GGNCC 5 cut(s) 137, 170, 295, 343, 733
PspPPI RGGWCCY 1 cut(s) 295
PstNI CAGNNNCTG 1 cut(s) 769
PsuI RGATCY 3 cut(s) 93, 481, 699
PsyI GACNNNGTC 1 cut(s) 881
RsaI GTAC 5 cut(s) 102, 325, 524, 1137, 1168
RsaNI GTAC 5 cut(s) 101, 324, 523, 1136, 1167
RseI CAYNNNNRTG 1 cut(s) 849
SacII CCGCGG 1 cut(s) 931
SaqAI TTAA 4 cut(s) 228, 423, 1049, 1210
SatI GCNGC 8 cut(s) 147, 180, 210, 276, 575, 797, 928, 1128
Sau3AI GATC 9 cut(s) 93, 466, 481, 585, 699, 895, 939, 1083, 1090
Sau96I GGNCC 5 cut(s) 137, 170, 295, 343, 733
SchI GAGTC 2 cut(s) 455, 656
ScrFI CCNGG 2 cut(s) 417, 1155
SduI GDGCHC 1 cut(s) 618
SfaNI GCATC 4 cut(s) 63, 429, 501, 1165
SfcI CTRYAG 1 cut(s) 1033
Sfr303I CCGCGG 1 cut(s) 931
SgrAI CRCCGGYG 1 cut(s) 37
SgrBI CCGCGG 1 cut(s) 931
SinI GGWCC 4 cut(s) 137, 170, 295, 343
SmiMI CAYNNNNRTG 1 cut(s) 849
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SpeI ACTAGT 1 cut(s) 947
SphI GCATGC 1 cut(s) 666
Sse9I AATT 4 cut(s) 327, 561, 1095, 1106
SseBI AGGCCT 1 cut(s) 1012
SsiI CCGC 7 cut(s) 10, 26, 626, 928, 930, 935, 1146
SspMI CTAG 2 cut(s) 948, 1058
StuI AGGCCT 1 cut(s) 1012
StyD4I CCNGG 2 cut(s) 415, 1153
TaaI ACNGT 3 cut(s) 287, 359, 535
TaiI ACGT 4 cut(s) 49, 600, 716, 817
TaqI TCGA 6 cut(s) 14, 57, 303, 495, 519, 612
TasI AATT 4 cut(s) 327, 561, 1095, 1106
TatI WGTACW 1 cut(s) 323
TauI GCSGC 1 cut(s) 930
TfiI GAWTC 2 cut(s) 568, 609
Tru1I TTAA 4 cut(s) 228, 423, 1049, 1210
Tru9I TTAA 4 cut(s) 228, 423, 1049, 1210
TscAI CASTG 3 cut(s) 353, 544, 646
TseFI GTSAC 1 cut(s) 943
TseI GCWGC 7 cut(s) 146, 179, 209, 275, 574, 796, 1127
Tsp45I GTSAC 1 cut(s) 943
TspDTI ATGAA 6 cut(s) 321, 397, 672, 684, 706, 863
TspRI CASTG 3 cut(s) 353, 544, 646
Tth111I GACNNNGTC 1 cut(s) 881
VpaK11BI GGWCC 4 cut(s) 137, 170, 295, 343
XapI RAATTY 1 cut(s) 1106
XceI RCATGY 2 cut(s) 68, 666
XmiI GTMKAC 1 cut(s) 1117
XmnI GAANNNNTTC 1 cut(s) 854
XspI CTAG 2 cut(s) 948, 1058
Zsp2I ATGCAT 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.