Rh2DG569200

SPX and EXS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003754
Physical Location & Seq
Reverse (-)
79882340 .. 79950836
68497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG569200.1

Sequence Viewer

Length: 1419 bp
ATGTTTGGAGGTCTTGAGACAGTTCCTTCCAATAGTCCGCACTTAAGAAAGTCGGGTAGCAGACCTGTTGTCTCTGATCTGGGTACAAGTGAAGTTGAGAATGGTGCTGAGGAGGGTTTTGTGCATCTAATAGAGGGAAACGATATGAAGGGAAGCACACCATTGAGTACGGTTGTAATAATGCCGTCTCCGACTTTGCTGTGGAGATTCAAGGTCCTGCTGTTCTTCGCTTGGGGTTTCATTTGTTGCAAGATTGGATGGGATTCTGTCATGAGAATGAGTGTGGACTTGCGAGATTTATTTCTGTACGAGGCATTTTTGTACTACAATCCTCTTCTTCTTGTGACTATGATGGTTTGGTTTTGGGGAATTAATCTATGGGTATTCGCGCAGTCCCAAGTCAGTTATCCTAAAATTTTTGAGCTTGATCAAAATCACTTGACTCACAGAGAAATATGGAAGTGTGCCACATGGATGACCATTGTTGTGCCAACAAGCATGACGGCGTATCTTTATCTCTACTCACATGGAGAAGTGTCGCTGGCTGCATCACAACCAGTACTATTATATGCTGCAGTTGCAATGATTTTGATATTCCCTTTTGATATTTTCTATCTGTCAACTCGCTTTTACTTTTTGAGGACTCTTTGGCGTATTGTTCTCCCTCTACAGGCAATATCCTTTTCTGACTTTTTCGTGGCCGATATTCTTACCTCCATGTCGAAGGTGCTTTCAGATTTGGAGCGATCAGTATGTCGAATGCTCCATCGACAGGTTGCCACTATAGCATGGTTTGAAGCTGATTCAGTTTGTGGCAGTCACTCTGTTGCAATCCCTTTGGTTCTTGTGTTGCCGTATCTTTTTCGTTTGTTCCAATGCCTTCGACAGTACAAGGATACTGGAGAGAGAACATCCCTTTTGAATGCTTTAAAGTATTCGACTGCAGTACCTGTGATTTTTCTCTCAGCCCTTAAATATCACATCTTCCCTGAAAAGTGGACAAACTTCTATCGGCCCCTGTGGCTTCTCTCGGCCATTTTGAACTCTTTGTACTCATTTTACTGGGATGTGACTAGAGATTGGGACTTGAGTGGCTTCACGCGGATTTTCAAGTCCAACAAATCACATATCTTGTCAAACCTCATACATGGACGGAAATGGGTTTATTTCTGGGTGATAACTAGCAACTTAATACTGCGTTGTACATGGACATACAAGCTGTCTGCCCATCTCCGTCACAATTATCTTACTGTGTTTGCAATTACTGCCTTGGAGATTTTCCGCCGCTTTCAATGGGTTTTCTTCCGTGTGGAAAAGGAGTGGATCAAGATGAGCTCGAAGTCTAACATTCAACTTTCCATGAGTGACATCCCAAATGAGGAAGACAGATTACTTGTTTCTAATGGCCACAGTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EXS

Protein Analysis

472

Amino Acids

55.02

Weight (kDa)

8.91

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXS PF03124 106 - 442 2.7e-94 EXS family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 389, 1102
AciI CCGC 4 cut(s) 38, 1102, 1282, 1285
AclWI GGATC 1 cut(s) 1331
AcoI YGGCCR 3 cut(s) 699, 1032, 1405
AcsI RAATTY 1 cut(s) 414
AfaI GTAC 9 cut(s) 85, 169, 308, 323, 561, 890, 948, 1052, 1204
AfiI CCNNNNNNNGG 3 cut(s) 670, 772, 1378
AflII CTTAAG 1 cut(s) 43
AgsI TTSAA 7 cut(s) 211, 797, 922, 1042, 1111, 1292, 1352
AhdI GACNNNNNGTC 1 cut(s) 68
AluBI AGCT 4 cut(s) 424, 800, 1219, 1335
AluI AGCT 4 cut(s) 424, 800, 1219, 1335
Alw21I GWGCWC 1 cut(s) 1337
Alw26I GTCTC 3 cut(s) 11, 76, 192
AlwI GGATC 1 cut(s) 1331
AlwNI CAGNNNCTG 1 cut(s) 950
AoxI GGCC 4 cut(s) 699, 1013, 1032, 1405
ApeKI GCWGC 2 cut(s) 545, 572
ApoI RAATTY 1 cut(s) 414
AseI ATTAAT 1 cut(s) 372
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 2 cut(s) 214, 1014
AsuHPI GGTGA 1 cut(s) 1186
AvaII GGWCC 1 cut(s) 214
BaeI ACNNNNGTAYC 2 cut(s) 930, 963
BalI TGGCCA 1 cut(s) 1407
BanII GRGCYC 1 cut(s) 1337
BarI GAAGNNNNNNTAC 2 cut(s) 1374, 1406
BbsI GAAGAC 1 cut(s) 1389
Bbv12I GWGCWC 1 cut(s) 1337
BbvCI CCTCAGC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 532, 559
BccI CCATC 4 cut(s) 252, 346, 774, 1236
BceAI ACGGC 3 cut(s) 169, 519, 838
BciVI GTATCC 1 cut(s) 889
BclI TGATCA 1 cut(s) 427
BcoDI GTCTC 3 cut(s) 11, 76, 192
BfaI CTAG 2 cut(s) 1074, 1182
BfmI CTRYAG 4 cut(s) 573, 668, 783, 942
BfrI CTTAAG 1 cut(s) 43
BfuI GTATCC 1 cut(s) 889
BglI GCCNNNNNGGC 1 cut(s) 1021
BisI GCNGC 3 cut(s) 546, 573, 1285
BlsI GCNGC 3 cut(s) 547, 574, 1286
BmcAI AGTACT 1 cut(s) 561
Bme18I GGWCC 1 cut(s) 214
BmeRI GACNNNNNGTC 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 214, 1014
BmiI GGNNCC 1 cut(s) 1016
BmrI ACTGGG 1 cut(s) 1072
BmsI GCATC 2 cut(s) 133, 557
BmuI ACTGGG 1 cut(s) 1072
BpiI GAAGAC 1 cut(s) 1389
BpmI CTGGAG 1 cut(s) 921
Bpu10I CCTNAGC 1 cut(s) 108
BpuEI CTTGAG 2 cut(s) 35, 1108
BsaBI GATNNNNATC 1 cut(s) 432
BsaJI CCNNGG 1 cut(s) 1269
Bsc4I CCNNNNNNNGG 3 cut(s) 670, 772, 1378
Bse1I ACTGG 3 cut(s) 557, 904, 1067
Bse3DI GCAATG 1 cut(s) 588
Bse8I GATNNNNATC 1 cut(s) 432
BseDI CCNNGG 1 cut(s) 1269
BseGI GGATG 5 cut(s) 263, 480, 911, 1072, 1368
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 3 cut(s) 670, 772, 1378
BseMI GCAATG 1 cut(s) 588
BseMII CTCAG 2 cut(s) 99, 978
BseNI ACTGG 3 cut(s) 557, 904, 1067
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 2 cut(s) 532, 559
Bsh1236I CGCG 2 cut(s) 389, 1102
BshFI GGCC 4 cut(s) 701, 1015, 1034, 1407
BsiHKAI GWGCWC 1 cut(s) 1337
BslFI GGGAC 2 cut(s) 379, 1097
BslI CCNNNNNNNGG 3 cut(s) 670, 772, 1378
BsmAI GTCTC 3 cut(s) 11, 76, 192
BsmBI CGTCTC 1 cut(s) 192
BsmFI GGGAC 2 cut(s) 379, 1097
BsmI GAATGC 2 cut(s) 765, 928
BsnI GGCC 4 cut(s) 701, 1015, 1034, 1407
Bsp1286I GDGCHC 1 cut(s) 1337
Bsp1407I TGTACA 1 cut(s) 1202
Bsp143I GATC 4 cut(s) 76, 427, 746, 1323
BspACI CCGC 4 cut(s) 38, 1102, 1282, 1285
BspANI GGCC 4 cut(s) 701, 1015, 1034, 1407
BspCNI CTCAG 2 cut(s) 100, 977
BspFNI CGCG 2 cut(s) 389, 1102
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 1016
BspMAI CTGCAG 2 cut(s) 577, 946
BspPI GGATC 1 cut(s) 1331
BspTI CTTAAG 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 588
BsrGI TGTACA 1 cut(s) 1202
BsrI ACTGG 3 cut(s) 557, 904, 1067
BssECI CCNNGG 1 cut(s) 1269
BssMI GATC 4 cut(s) 76, 427, 746, 1323
BssT1I CCWWGG 1 cut(s) 1269
Bst4CI ACNGT 5 cut(s) 22, 172, 888, 1252, 1412
Bst6I CTCTTC 1 cut(s) 339
BstAFI CTTAAG 1 cut(s) 43
BstAPI GCANNNNNTGC 1 cut(s) 1265
BstAUI TGTACA 1 cut(s) 1202
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 2 cut(s) 108, 964
BstF5I GGATG 5 cut(s) 263, 480, 911, 1072, 1368
BstFNI CGCG 2 cut(s) 389, 1102
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 4 cut(s) 79, 430, 749, 1326
BstMAI GTCTC 3 cut(s) 11, 76, 192
BstMBI GATC 4 cut(s) 76, 427, 746, 1323
BstMWI GCNNNNNNNGC 4 cut(s) 578, 785, 1021, 1265
BstSFI CTRYAG 4 cut(s) 573, 668, 783, 942
BstUI CGCG 2 cut(s) 389, 1102
BstV1I GCAGC 2 cut(s) 532, 559
BstV2I GAAGAC 1 cut(s) 1389
BsuI GTATCC 1 cut(s) 889
BsuRI GGCC 4 cut(s) 701, 1015, 1034, 1407
BtsCI GGATG 5 cut(s) 263, 480, 911, 1072, 1368
BtsIMutI CAGTG 1 cut(s) 1417
Cac8I GCNNGC 1 cut(s) 543
CaiI CAGNNNCTG 1 cut(s) 950
CciI TCATGA 1 cut(s) 270
CfoI GCGC 1 cut(s) 391
Cfr13I GGNCC 2 cut(s) 214, 1014
Csp6I GTAC 9 cut(s) 84, 168, 307, 322, 560, 889, 947, 1051, 1203
CviAII CATG 9 cut(s) 271, 471, 499, 527, 718, 789, 1148, 1206, 1360
CviQI GTAC 9 cut(s) 84, 168, 307, 322, 560, 889, 947, 1051, 1203
DdeI CTNAG 2 cut(s) 108, 964
DpnI GATC 4 cut(s) 78, 429, 748, 1325
DpnII GATC 4 cut(s) 76, 427, 746, 1323
DraI TTTAAA 1 cut(s) 930
DriI GACNNNNNGTC 1 cut(s) 68
EaeI YGGCCR 3 cut(s) 699, 1032, 1405
Eam1104I CTCTTC 1 cut(s) 339
Eam1105I GACNNNNNGTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 339
EciI GGCGGA 1 cut(s) 1271
Ecl136II GAGCTC 1 cut(s) 1335
Eco130I CCWWGG 1 cut(s) 1269
Eco24I GRGCYC 1 cut(s) 1337
Eco47I GGWCC 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 1335
EcoICRI GAGCTC 1 cut(s) 1335
EcoO109I RGGNCCY 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 1269
EcoT38I GRGCYC 1 cut(s) 1337
ErhI CCWWGG 1 cut(s) 1269
Esp3I CGTCTC 1 cut(s) 192
FaeI CATG 9 cut(s) 274, 474, 502, 530, 721, 792, 1151, 1209, 1363
FaqI GGGAC 2 cut(s) 379, 1097
FatI CATG 9 cut(s) 270, 470, 498, 526, 717, 788, 1147, 1205, 1359
FbaI TGATCA 1 cut(s) 427
Fnu4HI GCNGC 3 cut(s) 546, 573, 1285
FokI GGATG 5 cut(s) 270, 487, 898, 1079, 1355
FriOI GRGCYC 1 cut(s) 1337
Fsp4HI GCNGC 3 cut(s) 546, 573, 1285
FspBI CTAG 2 cut(s) 1074, 1182
GlaI GCGC 1 cut(s) 390
GluI GCNGC 3 cut(s) 546, 573, 1285
GsuI CTGGAG 1 cut(s) 921
HaeIII GGCC 4 cut(s) 701, 1015, 1034, 1407
HhaI GCGC 1 cut(s) 391
Hin1II CATG 9 cut(s) 274, 474, 502, 530, 721, 792, 1151, 1209, 1363
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HincII GTYRAC 1 cut(s) 621
HindII GTYRAC 1 cut(s) 621
HinfI GANTC 5 cut(s) 207, 263, 442, 643, 803
HphI GGTGA 1 cut(s) 1186
Hpy166II GTNNAC 3 cut(s) 286, 621, 999
Hpy188I TCNGA 4 cut(s) 76, 192, 688, 736
Hpy188III TCNNGA 3 cut(s) 14, 271, 1327
Hpy8I GTNNAC 3 cut(s) 286, 621, 999
HpyAV CCTTC 4 cut(s) 36, 142, 718, 890
HpyCH4III ACNGT 5 cut(s) 22, 172, 888, 1252, 1412
HpyCH4V TGCA 8 cut(s) 124, 249, 548, 575, 581, 830, 944, 1259
HpyF10VI GCNNNNNNNGC 4 cut(s) 578, 785, 1021, 1265
HpyF3I CTNAG 2 cut(s) 108, 964
Hsp92II CATG 9 cut(s) 274, 474, 502, 530, 721, 792, 1151, 1209, 1363
HspAI GCGC 1 cut(s) 389
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 4 cut(s) 76, 427, 746, 1323
LmnI GCTCC 2 cut(s) 742, 768
Lsp1109I GCAGC 2 cut(s) 532, 559
LweI GCATC 2 cut(s) 133, 557
MaeI CTAG 2 cut(s) 1074, 1182
MaeIII GTNAC 5 cut(s) 343, 818, 1069, 1235, 1364
MalI GATC 4 cut(s) 78, 429, 748, 1325
MboI GATC 4 cut(s) 76, 427, 746, 1323
MboII GAAGA 6 cut(s) 217, 326, 329, 976, 1294, 1394
MhlI GDGCHC 1 cut(s) 1337
MlsI TGGCCA 1 cut(s) 1407
MluCI AATT 4 cut(s) 369, 414, 1240, 1260
MluNI TGGCCA 1 cut(s) 1407
MlyI GAGTC 2 cut(s) 436, 637
MmeI TCCRAC 2 cut(s) 215, 1140
Mox20I TGGCCA 1 cut(s) 1407
MscI TGGCCA 1 cut(s) 1407
MseI TTAA 5 cut(s) 44, 372, 929, 972, 1190
MslI CAYNNNNRTG 3 cut(s) 275, 473, 485
Msp20I TGGCCA 1 cut(s) 1407
MspCI CTTAAG 1 cut(s) 43
Mva1269I GAATGC 2 cut(s) 765, 928
MvnI CGCG 2 cut(s) 389, 1102
MwoI GCNNNNNNNGC 4 cut(s) 578, 785, 1021, 1265
NdeII GATC 4 cut(s) 76, 427, 746, 1323
NlaIII CATG 9 cut(s) 274, 474, 502, 530, 721, 792, 1151, 1209, 1363
NlaIV GGNNCC 1 cut(s) 1016
NmeAIII GCCGAG 1 cut(s) 1010
NmuCI GTSAC 5 cut(s) 343, 818, 1069, 1235, 1364
PagI TCATGA 1 cut(s) 270
PctI GAATGC 2 cut(s) 765, 928
PfeI GAWTC 3 cut(s) 207, 263, 803
PkrI GCNGC 3 cut(s) 547, 574, 1286
PleI GAGTC 2 cut(s) 436, 637
PpsI GAGTC 2 cut(s) 436, 637
PpuMI RGGWCCY 1 cut(s) 214
PshBI ATTAAT 1 cut(s) 372
Psp124BI GAGCTC 1 cut(s) 1337
Psp5II RGGWCCY 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 1016
PspPI GGNCC 2 cut(s) 214, 1014
PspPPI RGGWCCY 1 cut(s) 214
PsrI GAACNNNNNNTAC 2 cut(s) 1034, 1066
PstI CTGCAG 2 cut(s) 577, 946
PstNI CAGNNNCTG 1 cut(s) 950
RsaI GTAC 9 cut(s) 85, 169, 308, 323, 561, 890, 948, 1052, 1204
RsaNI GTAC 9 cut(s) 84, 168, 307, 322, 560, 889, 947, 1051, 1203
RseI CAYNNNNRTG 3 cut(s) 275, 473, 485
SacI GAGCTC 1 cut(s) 1337
SaqAI TTAA 5 cut(s) 44, 372, 929, 972, 1190
SatI GCNGC 3 cut(s) 546, 573, 1285
Sau3AI GATC 4 cut(s) 76, 427, 746, 1323
Sau96I GGNCC 2 cut(s) 214, 1014
ScaI AGTACT 1 cut(s) 561
SchI GAGTC 2 cut(s) 436, 637
SduI GDGCHC 1 cut(s) 1337
SfaNI GCATC 2 cut(s) 133, 557
SfcI CTRYAG 4 cut(s) 573, 668, 783, 942
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 3 cut(s) 275, 473, 485
SmlI CTYRAG 3 cut(s) 14, 43, 1087
SmoI CTYRAG 3 cut(s) 14, 43, 1087
Sse9I AATT 4 cut(s) 369, 414, 1240, 1260
SsiI CCGC 4 cut(s) 38, 1102, 1282, 1285
SspMI CTAG 2 cut(s) 1074, 1182
SstI GAGCTC 1 cut(s) 1337
StyI CCWWGG 1 cut(s) 1269
TaaI ACNGT 5 cut(s) 22, 172, 888, 1252, 1412
TaqI TCGA 6 cut(s) 722, 757, 769, 883, 938, 1337
TasI AATT 4 cut(s) 369, 414, 1240, 1260
TatI WGTACW 5 cut(s) 321, 559, 888, 1050, 1202
TauI GCSGC 1 cut(s) 1287
TfiI GAWTC 3 cut(s) 207, 263, 803
Tru1I TTAA 5 cut(s) 44, 372, 929, 972, 1190
Tru9I TTAA 5 cut(s) 44, 372, 929, 972, 1190
TscAI CASTG 1 cut(s) 1417
TseFI GTSAC 5 cut(s) 343, 818, 1069, 1235, 1364
TseI GCWGC 2 cut(s) 545, 572
Tsp45I GTSAC 5 cut(s) 343, 818, 1069, 1235, 1364
TspDTI ATGAA 2 cut(s) 161, 229
TspGWI ACGGA 3 cut(s) 1168, 1223, 1295
TspRI CASTG 1 cut(s) 1417
Vha464I CTTAAG 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 214
VspI ATTAAT 1 cut(s) 372
XapI RAATTY 1 cut(s) 414
XspI CTAG 2 cut(s) 1074, 1182
ZrmI AGTACT 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.