Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002023.1

Orthogroup ID

OG0003754

Physical Location & Seq

Genomic Coordinates Forward (+)

17395 .. 22684

Gene Structure 5290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002023.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

atgtttggaggtcttgagacagttccttccaatagtccgcacttaagaaagtcgggtagcagacctgttgtctctgatctgggtacaagtgaagttgagaatggtgctgaggagggttttgtgcatctaatagagggaaacgatatgaagggaagcacaccattgagtacggttgcaataatgccgtctccgactttgctgtggagattcaaggtcctgctgttcttcgcttggggtttcatttgttgcaagattggatgggattctgtcatgagaatgagtgtggacttgcgagatttatttctgtacgaagcatttttgtactacaatcctcttcttcttgtgactatgatggtttggttttggggaattaatctatgggtgttcgcgcagtcccaagtcagttatcctaaaatttttgagcttgatcaaaatcacttgactcacagagaaatatggaagtgtgccacatggatgaccattgttgtgccaacaagcatgacggcgtatctttatctctactcacatggagaagtgtcgctggctgcatcacaaccagtactattatatgctgcagttgcaatgattttgatattcccttttgatattttctatctgtcaactcgcttttactttttgaggactctttggcgtatcgttctccctctacaggcaatatccttttctgactttttcgtggccgatattcttacctccatgtcgaaggtgctttcagatttggagcgatcagtatgtcgaatgctccatcgacaggttgccactatagcatggtttgaagctgattcagtttgtggcagtcactctgttgcaatccctttggttcttgtgttgccgtatctttttcgtttgttccaatgccttcgacagtacaaggatactggagagagaacatcccttttgaatgctttaaagtattcgactgcagtacctgtgatttttctctcggcccttaaatatcacatcttccctgaaaagtggacaaacttctatcggcccctttggcttctctcggccattttgaactctttgtactcattttactgggatgtgactagagattgggacttgagtggcttcactcggattttcaagtccaacaaatcacatatcttgtcaaacctcatacatggacggaaatgggtttatttctgggtgataactagcaacttaatactgcgttgtacatggacatacaagctgtctgcccatctccgtcacaattatcttactgtgtttgcaattactgccttggagattttccgccgctttcaatgggttttcttccgtgtggaaaaggagtggatcaagatgagctcgaagtctaacattcaactttccatgagtgacatcccaaatgaggaagacagattacttgtttctaatggccacagtgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS

Protein Analysis

472

Amino Acids

54.99

Weight (kDa)

8.91

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32295 AT2G32295
fragaria_vesca	FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560
malus_domestica	MD09G1104800.v1.1 MD17G1092500.v1.1
prunus_persica	Prupe.3G220700_v2.0.a1 Prupe.3G220700_v2.0.a1 Prupe.3G220700_v2.0.a1 Prupe.3G220700_v2.0.a1 Prupe.3G220700_v2.0.a1
pyrus_communis	pycom09g02790 pycom17g09010
rosa_chinensis	RchiOBHm_Chr2g0160141
rosa_laevigata	RLG00000021199
rosa_multiflora	Rmu_sc0002023.1_g000002
rosa_roxburghii	Rroxscaffold_2G00090020
rosa_rugosa	Rorug02G0481100 Rorug02G0481200 Rorug02G0481300
rosa_samantha	Rh2AG547200 Rh2BG560500 Rh2CG530900 Rh2DG569200
rosa_wichuraiana	Rw2G045250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	389
AciI	CCGC	3 cut(s)	38, 1282, 1285
AclWI	GGATC	1 cut(s)	1331
AcoI	YGGCCR	3 cut(s)	699, 1032, 1405
AcsI	RAATTY	1 cut(s)	414
AfaI	GTAC	9 cut(s)	85, 169, 308, 323, 561, 890, 948, 1052, 1204
AfiI	CCNNNNNNNGG	3 cut(s)	670, 772, 1378
AflII	CTTAAG	1 cut(s)	43
AgsI	TTSAA	7 cut(s)	211, 797, 922, 1042, 1111, 1292, 1352
AhdI	GACNNNNNGTC	1 cut(s)	68
AluBI	AGCT	4 cut(s)	424, 800, 1219, 1335
AluI	AGCT	4 cut(s)	424, 800, 1219, 1335
Alw21I	GWGCWC	1 cut(s)	1337
Alw26I	GTCTC	3 cut(s)	11, 76, 192
AlwI	GGATC	1 cut(s)	1331
AlwNI	CAGNNNCTG	1 cut(s)	950
AoxI	GGCC	5 cut(s)	699, 966, 1013, 1032, 1405
ApeKI	GCWGC	2 cut(s)	545, 572
ApoI	RAATTY	1 cut(s)	414
AseI	ATTAAT	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	3 cut(s)	214, 967, 1014
AsuHPI	GGTGA	1 cut(s)	1186
AvaII	GGWCC	1 cut(s)	214
BaeI	ACNNNNGTAYC	2 cut(s)	930, 963
BalI	TGGCCA	1 cut(s)	1407
BanII	GRGCYC	1 cut(s)	1337
BarI	GAAGNNNNNNTAC	2 cut(s)	1374, 1406
BbsI	GAAGAC	1 cut(s)	1389
Bbv12I	GWGCWC	1 cut(s)	1337
BbvCI	CCTCAGC	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	532, 559
BccI	CCATC	4 cut(s)	252, 346, 774, 1236
BceAI	ACGGC	3 cut(s)	169, 519, 838
BciVI	GTATCC	1 cut(s)	889
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	3 cut(s)	11, 76, 192
BfaI	CTAG	2 cut(s)	1074, 1182
BfmI	CTRYAG	4 cut(s)	573, 668, 783, 942
BfrI	CTTAAG	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	889
BglI	GCCNNNNNGGC	1 cut(s)	1021
BisI	GCNGC	3 cut(s)	546, 573, 1285
BlsI	GCNGC	3 cut(s)	547, 574, 1286
BmcAI	AGTACT	1 cut(s)	561
Bme18I	GGWCC	1 cut(s)	214
BmeRI	GACNNNNNGTC	1 cut(s)	68
BmgT120I	GGNCC	3 cut(s)	214, 967, 1014
BmiI	GGNNCC	1 cut(s)	1016
BmrI	ACTGGG	1 cut(s)	1072
BmsI	GCATC	2 cut(s)	133, 557
BmuI	ACTGGG	1 cut(s)	1072
BpiI	GAAGAC	1 cut(s)	1389
BpmI	CTGGAG	1 cut(s)	921
Bpu10I	CCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	2 cut(s)	35, 1108
BsaBI	GATNNNNATC	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	1269
Bsc4I	CCNNNNNNNGG	3 cut(s)	670, 772, 1378
Bse1I	ACTGG	3 cut(s)	557, 904, 1067
Bse3DI	GCAATG	1 cut(s)	588
Bse8I	GATNNNNATC	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	1269
BseGI	GGATG	5 cut(s)	263, 480, 911, 1072, 1368
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	3 cut(s)	670, 772, 1378
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	3 cut(s)	557, 904, 1067
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	532, 559
Bsh1236I	CGCG	1 cut(s)	389
BshFI	GGCC	5 cut(s)	701, 968, 1015, 1034, 1407
BsiHKAI	GWGCWC	1 cut(s)	1337
BslFI	GGGAC	2 cut(s)	379, 1097
BslI	CCNNNNNNNGG	3 cut(s)	670, 772, 1378
BsmAI	GTCTC	3 cut(s)	11, 76, 192
BsmBI	CGTCTC	1 cut(s)	192
BsmFI	GGGAC	2 cut(s)	379, 1097
BsmI	GAATGC	2 cut(s)	765, 928
BsnI	GGCC	5 cut(s)	701, 968, 1015, 1034, 1407
Bsp1286I	GDGCHC	1 cut(s)	1337
Bsp1407I	TGTACA	1 cut(s)	1202
Bsp143I	GATC	4 cut(s)	76, 427, 746, 1323
BspACI	CCGC	3 cut(s)	38, 1282, 1285
BspANI	GGCC	5 cut(s)	701, 968, 1015, 1034, 1407
BspCNI	CTCAG	1 cut(s)	100
BspFNI	CGCG	1 cut(s)	389
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	1016
BspMAI	CTGCAG	2 cut(s)	577, 946
BspPI	GGATC	1 cut(s)	1331
BspTI	CTTAAG	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	588
BsrGI	TGTACA	1 cut(s)	1202
BsrI	ACTGG	3 cut(s)	557, 904, 1067
BssECI	CCNNGG	1 cut(s)	1269
BssMI	GATC	4 cut(s)	76, 427, 746, 1323
BssT1I	CCWWGG	1 cut(s)	1269
Bst4CI	ACNGT	5 cut(s)	22, 172, 888, 1252, 1412
Bst6I	CTCTTC	1 cut(s)	339
BstAFI	CTTAAG	1 cut(s)	43
BstAPI	GCANNNNNTGC	1 cut(s)	1265
BstAUI	TGTACA	1 cut(s)	1202
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	5 cut(s)	263, 480, 911, 1072, 1368
BstFNI	CGCG	1 cut(s)	389
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	4 cut(s)	79, 430, 749, 1326
BstMAI	GTCTC	3 cut(s)	11, 76, 192
BstMBI	GATC	4 cut(s)	76, 427, 746, 1323
BstMWI	GCNNNNNNNGC	4 cut(s)	578, 785, 1021, 1265
BstSFI	CTRYAG	4 cut(s)	573, 668, 783, 942
BstUI	CGCG	1 cut(s)	389
BstV1I	GCAGC	2 cut(s)	532, 559
BstV2I	GAAGAC	1 cut(s)	1389
BsuI	GTATCC	1 cut(s)	889
BsuRI	GGCC	5 cut(s)	701, 968, 1015, 1034, 1407
BtsCI	GGATG	5 cut(s)	263, 480, 911, 1072, 1368
BtsIMutI	CAGTG	1 cut(s)	1417
Cac8I	GCNNGC	1 cut(s)	543
CaiI	CAGNNNCTG	1 cut(s)	950
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	1 cut(s)	391
Cfr13I	GGNCC	3 cut(s)	214, 967, 1014
Csp6I	GTAC	9 cut(s)	84, 168, 307, 322, 560, 889, 947, 1051, 1203
CviAII	CATG	9 cut(s)	271, 471, 499, 527, 718, 789, 1148, 1206, 1360
CviQI	GTAC	9 cut(s)	84, 168, 307, 322, 560, 889, 947, 1051, 1203
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	4 cut(s)	78, 429, 748, 1325
DpnII	GATC	4 cut(s)	76, 427, 746, 1323
DraI	TTTAAA	1 cut(s)	930
DriI	GACNNNNNGTC	1 cut(s)	68
EaeI	YGGCCR	3 cut(s)	699, 1032, 1405
Eam1104I	CTCTTC	1 cut(s)	339
Eam1105I	GACNNNNNGTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	339
EciI	GGCGGA	1 cut(s)	1271
Ecl136II	GAGCTC	1 cut(s)	1335
Eco130I	CCWWGG	1 cut(s)	1269
Eco24I	GRGCYC	1 cut(s)	1337
Eco47I	GGWCC	1 cut(s)	214
Eco53kI	GAGCTC	1 cut(s)	1335
EcoICRI	GAGCTC	1 cut(s)	1335
EcoO109I	RGGNCCY	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	1269
EcoT38I	GRGCYC	1 cut(s)	1337
ErhI	CCWWGG	1 cut(s)	1269
Esp3I	CGTCTC	1 cut(s)	192
FaeI	CATG	9 cut(s)	274, 474, 502, 530, 721, 792, 1151, 1209, 1363
FaqI	GGGAC	2 cut(s)	379, 1097
FatI	CATG	9 cut(s)	270, 470, 498, 526, 717, 788, 1147, 1205, 1359
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	3 cut(s)	546, 573, 1285
FokI	GGATG	5 cut(s)	270, 487, 898, 1079, 1355
FriOI	GRGCYC	1 cut(s)	1337
Fsp4HI	GCNGC	3 cut(s)	546, 573, 1285
FspBI	CTAG	2 cut(s)	1074, 1182
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	3 cut(s)	546, 573, 1285
GsuI	CTGGAG	1 cut(s)	921
HaeIII	GGCC	5 cut(s)	701, 968, 1015, 1034, 1407
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	9 cut(s)	274, 474, 502, 530, 721, 792, 1151, 1209, 1363
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HincII	GTYRAC	1 cut(s)	621
HindII	GTYRAC	1 cut(s)	621
HinfI	GANTC	5 cut(s)	207, 263, 442, 643, 803
HphI	GGTGA	1 cut(s)	1186
Hpy166II	GTNNAC	3 cut(s)	286, 621, 999
Hpy188I	TCNGA	5 cut(s)	76, 192, 688, 736, 1104
Hpy188III	TCNNGA	3 cut(s)	14, 271, 1327
Hpy8I	GTNNAC	3 cut(s)	286, 621, 999
HpyAV	CCTTC	4 cut(s)	36, 142, 718, 890
HpyCH4III	ACNGT	5 cut(s)	22, 172, 888, 1252, 1412
HpyCH4V	TGCA	9 cut(s)	124, 176, 249, 548, 575, 581, 830, 944, 1259
HpyF10VI	GCNNNNNNNGC	4 cut(s)	578, 785, 1021, 1265
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	9 cut(s)	274, 474, 502, 530, 721, 792, 1151, 1209, 1363
HspAI	GCGC	1 cut(s)	389
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	76, 427, 746, 1323
LmnI	GCTCC	2 cut(s)	742, 768
Lsp1109I	GCAGC	2 cut(s)	532, 559
LweI	GCATC	2 cut(s)	133, 557
MaeI	CTAG	2 cut(s)	1074, 1182
MaeIII	GTNAC	5 cut(s)	343, 818, 1069, 1235, 1364
MalI	GATC	4 cut(s)	78, 429, 748, 1325
MboI	GATC	4 cut(s)	76, 427, 746, 1323
MboII	GAAGA	6 cut(s)	217, 326, 329, 976, 1294, 1394
MhlI	GDGCHC	1 cut(s)	1337
MlsI	TGGCCA	1 cut(s)	1407
MluCI	AATT	4 cut(s)	369, 414, 1240, 1260
MluNI	TGGCCA	1 cut(s)	1407
MlyI	GAGTC	2 cut(s)	436, 637
MmeI	TCCRAC	2 cut(s)	215, 1140
MnlI	CCTC	9 cut(s)	103, 106, 127, 342, 633, 675, 724, 1151, 1372
Mox20I	TGGCCA	1 cut(s)	1407
MscI	TGGCCA	1 cut(s)	1407
MseI	TTAA	5 cut(s)	44, 372, 929, 972, 1190
MslI	CAYNNNNRTG	3 cut(s)	275, 473, 485
Msp20I	TGGCCA	1 cut(s)	1407
MspCI	CTTAAG	1 cut(s)	43
Mva1269I	GAATGC	2 cut(s)	765, 928
MvnI	CGCG	1 cut(s)	389
MwoI	GCNNNNNNNGC	4 cut(s)	578, 785, 1021, 1265
NdeII	GATC	4 cut(s)	76, 427, 746, 1323
NlaIII	CATG	9 cut(s)	274, 474, 502, 530, 721, 792, 1151, 1209, 1363
NlaIV	GGNNCC	1 cut(s)	1016
NmeAIII	GCCGAG	2 cut(s)	944, 1010
NmuCI	GTSAC	5 cut(s)	343, 818, 1069, 1235, 1364
PagI	TCATGA	1 cut(s)	270
PctI	GAATGC	2 cut(s)	765, 928
PfeI	GAWTC	3 cut(s)	207, 263, 803
PkrI	GCNGC	3 cut(s)	547, 574, 1286
PleI	GAGTC	2 cut(s)	436, 637
PpsI	GAGTC	2 cut(s)	436, 637
PpuMI	RGGWCCY	1 cut(s)	214
PshBI	ATTAAT	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	1337
Psp5II	RGGWCCY	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	1016
PspPI	GGNCC	3 cut(s)	214, 967, 1014
PspPPI	RGGWCCY	1 cut(s)	214
PsrI	GAACNNNNNNTAC	2 cut(s)	1034, 1066
PstI	CTGCAG	2 cut(s)	577, 946
PstNI	CAGNNNCTG	1 cut(s)	950
RsaI	GTAC	9 cut(s)	85, 169, 308, 323, 561, 890, 948, 1052, 1204
RsaNI	GTAC	9 cut(s)	84, 168, 307, 322, 560, 889, 947, 1051, 1203
RseI	CAYNNNNRTG	3 cut(s)	275, 473, 485
SacI	GAGCTC	1 cut(s)	1337
SaqAI	TTAA	5 cut(s)	44, 372, 929, 972, 1190
SatI	GCNGC	3 cut(s)	546, 573, 1285
Sau3AI	GATC	4 cut(s)	76, 427, 746, 1323
Sau96I	GGNCC	3 cut(s)	214, 967, 1014
ScaI	AGTACT	1 cut(s)	561
SchI	GAGTC	2 cut(s)	436, 637
SduI	GDGCHC	1 cut(s)	1337
SfaNI	GCATC	2 cut(s)	133, 557
SfcI	CTRYAG	4 cut(s)	573, 668, 783, 942
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	3 cut(s)	275, 473, 485
SmlI	CTYRAG	3 cut(s)	14, 43, 1087
SmoI	CTYRAG	3 cut(s)	14, 43, 1087
Sse9I	AATT	4 cut(s)	369, 414, 1240, 1260
SsiI	CCGC	3 cut(s)	38, 1282, 1285
SspMI	CTAG	2 cut(s)	1074, 1182
SstI	GAGCTC	1 cut(s)	1337
StyI	CCWWGG	1 cut(s)	1269
TaaI	ACNGT	5 cut(s)	22, 172, 888, 1252, 1412
TaqI	TCGA	6 cut(s)	722, 757, 769, 883, 938, 1337
TasI	AATT	4 cut(s)	369, 414, 1240, 1260
TatI	WGTACW	5 cut(s)	321, 559, 888, 1050, 1202
TauI	GCSGC	1 cut(s)	1287
TfiI	GAWTC	3 cut(s)	207, 263, 803
Tru1I	TTAA	5 cut(s)	44, 372, 929, 972, 1190
Tru9I	TTAA	5 cut(s)	44, 372, 929, 972, 1190
TscAI	CASTG	1 cut(s)	1417
TseFI	GTSAC	5 cut(s)	343, 818, 1069, 1235, 1364
TseI	GCWGC	2 cut(s)	545, 572
Tsp45I	GTSAC	5 cut(s)	343, 818, 1069, 1235, 1364
TspDTI	ATGAA	2 cut(s)	161, 229
TspGWI	ACGGA	3 cut(s)	1168, 1223, 1295
TspRI	CASTG	1 cut(s)	1417
Vha464I	CTTAAG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	214
VspI	ATTAAT	1 cut(s)	372
XapI	RAATTY	1 cut(s)	414
XspI	CTAG	2 cut(s)	1074, 1182
ZrmI	AGTACT	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.