Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003754

Physical Location & Seq

Genomic Coordinates Reverse (-)

22145993 .. 22153033

Gene Structure 7041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G220700.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGTTTGGAGGTCTTGCGACTGTTCCTTCCAATAGTCCACATTTAAGAAAGTCGGGTAGCAGACCTGTTGTCTCTGATCTGGGTATAAGTGATAACGAAAATGGTGCTGAGGAGGGTTTCTTGAATCTGACAGAAGCAAACGATATGAAGGGTGGAAGCATGCCAATTAGTACAGCTGCAATAATGCCATCTCCAGCTTTGTTATGGAGATTCAAGGTCCTACTGTTCTTTGTCTGGGGTTTCATTTGTTGCAAGATTGGATGGGATTCTGTCATGAGGATGAGTGTGGATCTGCGAGATTTATTTCTATATGAGGCTTTTTTGTATTATAATCCTCTACTTCTTGTGACTATGATGGTTTGGTTTTGGGGAATTAATCTATGGGTGTTTGCTCAGGCCAATGTCAATTATGCAAAAATTTTTGATCTCGATCAAAATCATCTGACCCACAGAGAAATATGGAAGTGTGCCACATGGATGACGATCGTTGTGCCAACAAGCATGACAGCATATCTTTATCTTTATTCGCATGGAGAAGTGTCACTTGCTGCATCGCAACCAGTACTCTTATATGCTGCTGTTGCAATGATTTTGATATTCCCCTTTGATATTTTCTATTTGTCATCTCGCTTTTACTTGTTAAGGACTCTTTGGCGCATAGTTCTCCCATTACAGGCAATATCATTTTCTGACTTTTTCCTGGCCGATATTTTGACCTCCATGTCCAAGGTGCTTTCAGATTTGGAGCGATCAGTATGTCGAATGGTCCATCGACAGGTTGCCACTATTGCATGGTTTGAAGCTGACTCAGTTTGTGGCAGTCACTCTGTTGCAATCCCCTTGGTTCTTGTTTTGCCTTACCTTTTTCGTTTGTTCCAATGCCTTCGACAATATAAGGATACTGGCGAGAAAACAACCCTTCTAAATGCTTTGAAGTATTCAACTGCAGTACCTGTGATTTATCTTTCAGCCCTTAAATATCATGTCTTTCCTGAGAAGTGGACAAACTTTTATCGGCCCCTCTGGCTTCTATCAGGTGTTTTGAACTCTTTGTACTCTTTCTACTGGGACGTGACTAGAGATTGGGACTTGAGTGGTTTCACTCGAATTTTCAAGTTCGGCAAAGCACATCTCTTGTCAAACCTCATACACGGACGGAAATGGGTCTACTTCTGGGTGATAAGTAGCAACTTGATTCTGCGTTGTACCTGGACATACAAGCTGTCTTCCCATCTTCGCCACAATTACCTTACCGTGTTCGCAATCACGGCCTTGGAGATTTTCCGTCGCTTTCAATGGGTTTTCTTCCGTGTAGAAAACGAGTGGAACAAGATGAACTCTAAGTCAAACATTCAGCTTTCCATGAGCGACACCGCAAATGAGGAAGAAAGATTACTTGTTTCTAATGGCCACAATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS

Protein Analysis

474

Amino Acids

54.87

Weight (kDa)

8.9

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32295 AT2G32295
fragaria_vesca	FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560
malus_domestica	MD09G1104800.v1.1 MD17G1092500.v1.1
prunus_persica	Prupe.3G220700_v2.0.a1 Prupe.3G220700_v2.0.a1 Prupe.3G220700_v2.0.a1 Prupe.3G220700_v2.0.a1 Prupe.3G220700_v2.0.a1
pyrus_communis	pycom09g02790 pycom17g09010
rosa_chinensis	RchiOBHm_Chr2g0160141
rosa_laevigata	RLG00000021199
rosa_multiflora	Rmu_sc0002023.1_g000002
rosa_roxburghii	Rroxscaffold_2G00090020
rosa_rugosa	Rorug02G0481100 Rorug02G0481200 Rorug02G0481300
rosa_samantha	Rh2AG547200 Rh2BG560500 Rh2CG530900 Rh2DG569200
rosa_wichuraiana	Rw2G045250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
AasI	GACNNNNNNGTC	1 cut(s)	721
AccI	GTMKAC	1 cut(s)	1167
AciI	CCGC	1 cut(s)	1374
AclWI	GGATC	1 cut(s)	297
AcoI	YGGCCR	2 cut(s)	702, 1408
AcsI	RAATTY	2 cut(s)	417, 1107
AfaI	GTAC	5 cut(s)	172, 564, 951, 1055, 1207
AfiI	CCNNNNNNNGG	2 cut(s)	673, 775
AgsI	TTSAA	8 cut(s)	124, 214, 800, 934, 942, 1045, 1114, 1295
AhdI	GACNNNNNGTC	1 cut(s)	68
AjiI	CACGTC	1 cut(s)	1072
AjnI	CCWGG	2 cut(s)	699, 1208
AluBI	AGCT	5 cut(s)	176, 197, 803, 1222, 1357
AluI	AGCT	5 cut(s)	176, 197, 803, 1222, 1357
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	1 cut(s)	297
AlwNI	CAGNNNCTG	1 cut(s)	953
AoxI	GGCC	5 cut(s)	396, 702, 1016, 1269, 1408
ApeKI	GCWGC	3 cut(s)	176, 548, 575
ApoI	RAATTY	2 cut(s)	417, 1107
AseI	ATTAAT	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	657
AspS9I	GGNCC	3 cut(s)	217, 766, 1017
AsuHPI	GGTGA	1 cut(s)	1189
AvaII	GGWCC	2 cut(s)	217, 766
BaeI	ACNNNNGTAYC	2 cut(s)	933, 966
BalI	TGGCCA	1 cut(s)	1410
BarI	GAAGNNNNNNTAC	2 cut(s)	1377, 1409
BbsI	GAAGAC	1 cut(s)	1218
BbvCI	CCTCAGC	1 cut(s)	108
BbvI	GCAGC	3 cut(s)	163, 535, 562
BccI	CCATC	5 cut(s)	196, 255, 349, 777, 1239
BceAI	ACGGC	1 cut(s)	1284
BcgI	CGANNNNNNTGC	4 cut(s)	86, 120, 472, 506
BciT130I	CCWGG	2 cut(s)	701, 1210
BciVI	GTATCC	1 cut(s)	892
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	1 cut(s)	1077
BfmI	CTRYAG	1 cut(s)	945
BfuI	GTATCC	1 cut(s)	892
BglI	GCCNNNNNGGC	1 cut(s)	1024
BisI	GCNGC	3 cut(s)	177, 549, 576
BlsI	GCNGC	3 cut(s)	178, 550, 577
BmcAI	AGTACT	1 cut(s)	564
Bme1390I	CCNGG	2 cut(s)	701, 1210
Bme18I	GGWCC	2 cut(s)	217, 766
BmeRI	GACNNNNNGTC	1 cut(s)	68
BmgBI	CACGTC	1 cut(s)	1072
BmgT120I	GGNCC	3 cut(s)	217, 766, 1017
BmiI	GGNNCC	1 cut(s)	1019
BmrFI	CCNGG	2 cut(s)	701, 1210
BmrI	ACTGGG	1 cut(s)	1075
BmsI	GCATC	1 cut(s)	560
BmuI	ACTGGG	1 cut(s)	1075
BpiI	GAAGAC	1 cut(s)	1218
BpmI	CTGGAG	1 cut(s)	177
Bpu10I	CCTNAGC	2 cut(s)	108, 393
BpuEI	CTTGAG	1 cut(s)	1111
BsaBI	GATNNNNATC	3 cut(s)	429, 435, 482
BsaJI	CCNNGG	3 cut(s)	726, 840, 1272
Bsc4I	CCNNNNNNNGG	2 cut(s)	673, 775
Bse1I	ACTGG	3 cut(s)	560, 907, 1070
Bse3DI	GCAATG	1 cut(s)	591
Bse8I	GATNNNNATC	3 cut(s)	429, 435, 482
BseBI	CCWGG	2 cut(s)	701, 1210
BseDI	CCNNGG	3 cut(s)	726, 840, 1272
BseGI	GGATG	3 cut(s)	266, 285, 483
BseJI	GATNNNNATC	3 cut(s)	429, 435, 482
BseLI	CCNNNNNNNGG	2 cut(s)	673, 775
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	4 cut(s)	99, 407, 822, 984
BseNI	ACTGG	3 cut(s)	560, 907, 1070
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	3 cut(s)	163, 535, 562
Bsh1285I	CGRYCG	1 cut(s)	486
BshFI	GGCC	5 cut(s)	398, 704, 1018, 1271, 1410
BsiEI	CGRYCG	1 cut(s)	486
BslFI	GGGAC	2 cut(s)	1082, 1100
BslI	CCNNNNNNNGG	2 cut(s)	673, 775
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	2 cut(s)	1082, 1100
BsnI	GGCC	5 cut(s)	398, 704, 1018, 1271, 1410
Bsp143I	GATC	6 cut(s)	76, 289, 424, 430, 483, 749
BspACI	CCGC	1 cut(s)	1374
BspANI	GGCC	5 cut(s)	398, 704, 1018, 1271, 1410
BspCNI	CTCAG	4 cut(s)	100, 406, 821, 985
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	1019
BspMAI	CTGCAG	1 cut(s)	949
BspPI	GGATC	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	591
BsrI	ACTGG	3 cut(s)	560, 907, 1070
BssECI	CCNNGG	3 cut(s)	726, 840, 1272
BssMI	GATC	6 cut(s)	76, 289, 424, 430, 483, 749
BssT1I	CCWWGG	3 cut(s)	726, 840, 1272
Bst2UI	CCWGG	2 cut(s)	701, 1210
Bst4CI	ACNGT	3 cut(s)	22, 225, 1255
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	5 cut(s)	108, 393, 808, 993, 1341
BstF5I	GGATG	3 cut(s)	266, 285, 483
BstHHI	GCGC	1 cut(s)	657
BstKTI	GATC	6 cut(s)	79, 292, 427, 433, 486, 752
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	6 cut(s)	76, 289, 424, 430, 483, 749
BstMCI	CGRYCG	1 cut(s)	486
BstMWI	GCNNNNNNNGC	4 cut(s)	581, 788, 1024, 1268
BstNI	CCWGG	2 cut(s)	701, 1210
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	2 cut(s)	699, 1208
BstSFI	CTRYAG	1 cut(s)	945
BstV1I	GCAGC	3 cut(s)	163, 535, 562
BstV2I	GAAGAC	1 cut(s)	1218
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuI	GTATCC	1 cut(s)	892
BsuRI	GGCC	5 cut(s)	398, 704, 1018, 1271, 1410
BtgZI	GCGATG	1 cut(s)	537
BtrI	CACGTC	1 cut(s)	1072
BtsCI	GGATG	3 cut(s)	266, 285, 483
Cac8I	GCNNGC	1 cut(s)	161
CaiI	CAGNNNCTG	1 cut(s)	953
CciI	TCATGA	1 cut(s)	273
CfoI	GCGC	1 cut(s)	657
Cfr13I	GGNCC	3 cut(s)	217, 766, 1017
Csp6I	GTAC	5 cut(s)	171, 563, 950, 1054, 1206
CviAII	CATG	9 cut(s)	160, 274, 474, 502, 530, 721, 792, 983, 1363
CviQI	GTAC	5 cut(s)	171, 563, 950, 1054, 1206
DdeI	CTNAG	5 cut(s)	108, 393, 808, 993, 1341
DpnI	GATC	6 cut(s)	78, 291, 426, 432, 485, 751
DpnII	GATC	6 cut(s)	76, 289, 424, 430, 483, 749
DrdI	GACNNNNNNGTC	1 cut(s)	721
DriI	GACNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	721
EaeI	YGGCCR	2 cut(s)	702, 1408
Eam1105I	GACNNNNNGTC	1 cut(s)	68
Eco130I	CCWWGG	3 cut(s)	726, 840, 1272
Eco47I	GGWCC	2 cut(s)	217, 766
EcoO109I	RGGNCCY	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	699, 1208
EcoT14I	CCWWGG	3 cut(s)	726, 840, 1272
ErhI	CCWWGG	3 cut(s)	726, 840, 1272
FaeI	CATG	9 cut(s)	163, 277, 477, 505, 533, 724, 795, 986, 1366
FalI	AAGNNNNNCTT	2 cut(s)	528, 560
FaqI	GGGAC	2 cut(s)	1082, 1100
FatI	CATG	9 cut(s)	159, 273, 473, 501, 529, 720, 791, 982, 1362
FblI	GTMKAC	1 cut(s)	1167
Fnu4HI	GCNGC	3 cut(s)	177, 549, 576
FokI	GGATG	3 cut(s)	273, 292, 490
Fsp4HI	GCNGC	3 cut(s)	177, 549, 576
FspBI	CTAG	1 cut(s)	1077
GlaI	GCGC	1 cut(s)	656
GluI	GCNGC	3 cut(s)	177, 549, 576
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	5 cut(s)	398, 704, 1018, 1271, 1410
HhaI	GCGC	1 cut(s)	657
Hin1II	CATG	9 cut(s)	163, 277, 477, 505, 533, 724, 795, 986, 1366
Hin6I	GCGC	1 cut(s)	655
HinP1I	GCGC	1 cut(s)	655
HinfI	GANTC	6 cut(s)	124, 210, 266, 646, 806, 1195
HphI	GGTGA	1 cut(s)	1189
Hpy166II	GTNNAC	3 cut(s)	38, 1002, 1168
Hpy188I	TCNGA	5 cut(s)	76, 129, 444, 691, 739
Hpy188III	TCNNGA	4 cut(s)	121, 274, 428, 992
Hpy8I	GTNNAC	3 cut(s)	38, 1002, 1168
Hpy99I	CGWCG	1 cut(s)	1290
HpyAV	CCTTC	4 cut(s)	36, 142, 893, 929
HpyCH4III	ACNGT	3 cut(s)	22, 225, 1255
HpyCH4IV	ACGT	1 cut(s)	1071
HpyCH4V	TGCA	8 cut(s)	179, 252, 413, 551, 584, 791, 833, 947
HpyF10VI	GCNNNNNNNGC	4 cut(s)	581, 788, 1024, 1268
HpyF3I	CTNAG	5 cut(s)	108, 393, 808, 993, 1341
HpySE526I	ACGT	1 cut(s)	1071
Hsp92II	CATG	9 cut(s)	163, 277, 477, 505, 533, 724, 795, 986, 1366
HspAI	GCGC	1 cut(s)	655
Kzo9I	GATC	6 cut(s)	76, 289, 424, 430, 483, 749
LmnI	GCTCC	1 cut(s)	745
Lsp1109I	GCAGC	3 cut(s)	163, 535, 562
LweI	GCATC	1 cut(s)	560
MaeI	CTAG	1 cut(s)	1077
MaeII	ACGT	1 cut(s)	1071
MaeIII	GTNAC	4 cut(s)	346, 540, 821, 1072
MalI	GATC	6 cut(s)	78, 291, 426, 432, 485, 751
MboI	GATC	6 cut(s)	76, 289, 424, 430, 483, 749
MboII	GAAGA	4 cut(s)	1218, 1226, 1297, 1397
MflI	RGATCY	1 cut(s)	289
MlsI	TGGCCA	1 cut(s)	1410
MluCI	AATT	6 cut(s)	165, 372, 406, 417, 1107, 1243
MluNI	TGGCCA	1 cut(s)	1410
MlyI	GAGTC	2 cut(s)	640, 800
MnlI	CCTC	9 cut(s)	103, 106, 270, 307, 345, 727, 1031, 1154, 1375
Mox20I	TGGCCA	1 cut(s)	1410
MscI	TGGCCA	1 cut(s)	1410
MseI	TTAA	4 cut(s)	44, 375, 641, 975
MslI	CAYNNNNRTG	2 cut(s)	278, 476
Msp20I	TGGCCA	1 cut(s)	1410
MspA1I	CMGCKG	1 cut(s)	176
MspR9I	CCNGG	2 cut(s)	701, 1210
MvaI	CCWGG	2 cut(s)	701, 1210
MwoI	GCNNNNNNNGC	4 cut(s)	581, 788, 1024, 1268
NdeII	GATC	6 cut(s)	76, 289, 424, 430, 483, 749
NlaIII	CATG	9 cut(s)	163, 277, 477, 505, 533, 724, 795, 986, 1366
NlaIV	GGNNCC	1 cut(s)	1019
NmuCI	GTSAC	4 cut(s)	346, 540, 821, 1072
NspI	RCATGY	1 cut(s)	163
PaeI	GCATGC	1 cut(s)	163
PagI	TCATGA	1 cut(s)	273
PfeI	GAWTC	4 cut(s)	124, 210, 266, 1195
PkrI	GCNGC	3 cut(s)	178, 550, 577
Ple19I	CGATCG	1 cut(s)	486
PleI	GAGTC	2 cut(s)	640, 800
PpsI	GAGTC	2 cut(s)	640, 800
PpuMI	RGGWCCY	1 cut(s)	217
PshBI	ATTAAT	1 cut(s)	375
PsiI	TTATAA	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	2 cut(s)	699, 1208
PspGI	CCWGG	2 cut(s)	699, 1208
PspN4I	GGNNCC	1 cut(s)	1019
PspPI	GGNCC	3 cut(s)	217, 766, 1017
PspPPI	RGGWCCY	1 cut(s)	217
PsrI	GAACNNNNNNTAC	2 cut(s)	1037, 1069
PstI	CTGCAG	1 cut(s)	949
PstNI	CAGNNNCTG	1 cut(s)	953
PsuI	RGATCY	1 cut(s)	289
PvuI	CGATCG	1 cut(s)	486
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	5 cut(s)	172, 564, 951, 1055, 1207
RsaNI	GTAC	5 cut(s)	171, 563, 950, 1054, 1206
RseI	CAYNNNNRTG	2 cut(s)	278, 476
SaqAI	TTAA	4 cut(s)	44, 375, 641, 975
SatI	GCNGC	3 cut(s)	177, 549, 576
Sau3AI	GATC	6 cut(s)	76, 289, 424, 430, 483, 749
Sau96I	GGNCC	3 cut(s)	217, 766, 1017
ScaI	AGTACT	1 cut(s)	564
SchI	GAGTC	2 cut(s)	640, 800
ScrFI	CCNGG	2 cut(s)	701, 1210
SfaNI	GCATC	1 cut(s)	560
SfcI	CTRYAG	1 cut(s)	945
SinI	GGWCC	2 cut(s)	217, 766
SmiMI	CAYNNNNRTG	2 cut(s)	278, 476
SmlI	CTYRAG	1 cut(s)	1090
SmoI	CTYRAG	1 cut(s)	1090
SphI	GCATGC	1 cut(s)	163
Sse9I	AATT	6 cut(s)	165, 372, 406, 417, 1107, 1243
SsiI	CCGC	1 cut(s)	1374
SspMI	CTAG	1 cut(s)	1077
StyD4I	CCNGG	2 cut(s)	699, 1208
StyI	CCWWGG	3 cut(s)	726, 840, 1272
TaaI	ACNGT	3 cut(s)	22, 225, 1255
TaiI	ACGT	1 cut(s)	1074
TaqI	TCGA	5 cut(s)	429, 760, 772, 886, 1105
TasI	AATT	6 cut(s)	165, 372, 406, 417, 1107, 1243
TatI	WGTACW	3 cut(s)	170, 562, 1053
TfiI	GAWTC	4 cut(s)	124, 210, 266, 1195
Tru1I	TTAA	4 cut(s)	44, 375, 641, 975
Tru9I	TTAA	4 cut(s)	44, 375, 641, 975
TseFI	GTSAC	4 cut(s)	346, 540, 821, 1072
TseI	GCWGC	3 cut(s)	176, 548, 575
Tsp45I	GTSAC	4 cut(s)	346, 540, 821, 1072
TspDTI	ATGAA	3 cut(s)	161, 232, 1349
TspGWI	ACGGA	4 cut(s)	1167, 1171, 1274, 1298
VpaK11BI	GGWCC	2 cut(s)	217, 766
VspI	ATTAAT	1 cut(s)	375
XapI	RAATTY	2 cut(s)	417, 1107
XceI	RCATGY	1 cut(s)	163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	201
XmiI	GTMKAC	1 cut(s)	1167
XspI	CTAG	1 cut(s)	1077
ZrmI	AGTACT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.