RLG00000021199

SPX and EXS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003754
Physical Location & Seq
Reverse (-)
72885055 .. 72891061
6007 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021199

Sequence Viewer

Length: 1494 bp
ATGGTCTCTGGAATTAAATCCCCAAACAGTCCCTTCAAACTGTTAAAATTTTCAAACAGATCAGAGAGATCCAGCGAGCCCTTCAAAGGTTCGCATTGCGAGGTTCATAGCTGGTCCGCACTTAAGAAAGTCGGTTATAGAAAAAATCTTTCAGGTACAAGTGAAGTTGAGAATGGTGCTGAGGAGGGTTTTGTGCATCTAATAGAGGGAAACGATATGAAGGGTGTAAGCACACCATTGAGTACGGTTGCAATAATGCCGTCTCCGACTTTGCTGTGGAGATTCAAGGTCCTGCTGTTCTTCGCTTGGGGTTTCATTTGTTGCAAGATTGGATGGGATTCTGTCATGAGAATGAGTGTGGACTTGCGAGATTTATTTCTGTATGAGGCATTTTTGTACTACAATCCTCTTCTTCTTGTGACTATGATGGTTTGGTTTTGGGGAATTAATCTATGGGTTTTCGCGCAGTCTCAAGTCAGTTATCCTAAAATTTTTGAGCTTGATCAAAATCATTTGACTCACAGAGAAATATGGAAGTGTGCCACATGGATGACCATTGTTGTGCCAACAAGCATGACGGCGTATCTTTATCTCTACTCACATGGAGAAGTGTCGCTGGCTGCATCACAACCAGTACTATTATATGCTGCAGTTGCAATGATTTTGATATTCCCTTTTGATATTTTCTATCTGTCAACTCGCTTTTACTTTTTGAGGACTCTTTGGCGTATAGTTCTCCCTCTACAGGCAATATCCTTTTCTGACTTTTTCGTGGCCGATATTCTTACCTCCATGTCGAAGGTGCTTTCAGATTTGGAGCGATCAGTATGTCGAATGCTCCATCGACAGGTTGCCACTATAGCATGGTTTGAAGCTGATTCAGTTTGTGGCAGTCACTCTGTTGCAATCCCTTTGGTTCTTGTGTTGCCGTATCTTTTTCGTTTGTTCCAATGCCTTCGACAGTACAAGGATACTGGAGAGAGAACATCCCTTTTGAATGCTTTAAAGTATTCGACTGCAGTACCTGTGATTTTTCTCTCAGCCCTTAAATATCACATCTTCCCTGAAAAGTGGACAAACTTCTATCGGCCCCTTTGGCTTCTCTCGGCCATTTTGAACTCTTTGTACTCATTTTACTGGGATGTGACTAGAGATTGGGACTTGAGTGGTTTCACTCGGATTTTCAAGTCCAACAAATCACATATCTTGTCAAACCTCATACATGGACGGAAATGGGTTTATTTCTGGGTGATAACTAGCAACTTAATTCTGCGTTGTACATGGACATACAAGCTGTCTGCCCATCTCCGCCACAATTATCTTACTGTGTTTGCAATCACTGCCTTGGAGATTTTCCGCCGCTTTCAATGGGTTTTCTTCCGTGTGGAAAAGGAGTGGATCAAGATGAGCTCGAAGTCTAACATTCAACTTTCCATGAGTGACATCCCAAATGAGGAAGACAGATTACTTGTTTCTAATGGCCACAGTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EXS

Protein Analysis

498

Amino Acids

57.99

Weight (kDa)

9.25

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXS PF03124 131 - 467 3.2e-94 EXS family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 464
AciI CCGC 4 cut(s) 117, 1309, 1357, 1360
AclWI GGATC 2 cut(s) 63, 1406
AcoI YGGCCR 3 cut(s) 774, 1107, 1480
AcsI RAATTY 2 cut(s) 47, 489
AfaI GTAC 8 cut(s) 157, 244, 398, 636, 965, 1023, 1127, 1279
AfiI CCNNNNNNNGG 4 cut(s) 86, 745, 847, 1453
AflII CTTAAG 1 cut(s) 122
AluBI AGCT 5 cut(s) 111, 499, 875, 1294, 1410
AluI AGCT 5 cut(s) 111, 499, 875, 1294, 1410
Alw21I GWGCWC 1 cut(s) 1412
Alw26I GTCTC 3 cut(s) 10, 267, 474
AlwI GGATC 2 cut(s) 63, 1406
AlwNI CAGNNNCTG 1 cut(s) 1025
AoxI GGCC 4 cut(s) 774, 1088, 1107, 1480
ApeKI GCWGC 2 cut(s) 620, 647
ApoI RAATTY 2 cut(s) 47, 489
AseI ATTAAT 1 cut(s) 447
AspLEI GCGC 1 cut(s) 466
AspS9I GGNCC 3 cut(s) 114, 289, 1089
AsuHPI GGTGA 1 cut(s) 1261
AvaII GGWCC 2 cut(s) 114, 289
BaeI ACNNNNGTAYC 2 cut(s) 1005, 1038
BalI TGGCCA 1 cut(s) 1482
BanII GRGCYC 2 cut(s) 81, 1412
BarI GAAGNNNNNNTAC 2 cut(s) 1449, 1481
BbsI GAAGAC 1 cut(s) 1464
Bbv12I GWGCWC 1 cut(s) 1412
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 2 cut(s) 607, 634
BccI CCATC 4 cut(s) 327, 421, 849, 1311
BceAI ACGGC 3 cut(s) 244, 594, 913
BciVI GTATCC 1 cut(s) 964
BclI TGATCA 1 cut(s) 502
BcoDI GTCTC 3 cut(s) 10, 267, 474
BfaI CTAG 2 cut(s) 1149, 1257
BfmI CTRYAG 4 cut(s) 648, 743, 858, 1017
BfrI CTTAAG 1 cut(s) 122
BfuI GTATCC 1 cut(s) 964
BglI GCCNNNNNGGC 1 cut(s) 1096
BisI GCNGC 3 cut(s) 621, 648, 1360
BlsI GCNGC 3 cut(s) 622, 649, 1361
BmcAI AGTACT 1 cut(s) 636
Bme18I GGWCC 2 cut(s) 114, 289
BmgT120I GGNCC 3 cut(s) 114, 289, 1089
BmiI GGNNCC 1 cut(s) 1091
BmrI ACTGGG 1 cut(s) 1147
BmsI GCATC 2 cut(s) 205, 632
BmuI ACTGGG 1 cut(s) 1147
BpiI GAAGAC 1 cut(s) 1464
BpmI CTGGAG 1 cut(s) 996
Bpu10I CCTNAGC 1 cut(s) 180
BpuEI CTTGAG 2 cut(s) 456, 1183
BsaBI GATNNNNATC 1 cut(s) 507
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 1344
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 745, 847, 1453
Bse1I ACTGG 3 cut(s) 632, 979, 1142
Bse3DI GCAATG 2 cut(s) 94, 663
Bse8I GATNNNNATC 1 cut(s) 507
BseDI CCNNGG 1 cut(s) 1344
BseGI GGATG 5 cut(s) 338, 555, 986, 1147, 1443
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 4 cut(s) 86, 745, 847, 1453
BseMI GCAATG 2 cut(s) 94, 663
BseMII CTCAG 2 cut(s) 171, 1053
BseNI ACTGG 3 cut(s) 632, 979, 1142
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 2 cut(s) 607, 634
Bsh1236I CGCG 1 cut(s) 464
BshFI GGCC 4 cut(s) 776, 1090, 1109, 1482
BsiHKAI GWGCWC 1 cut(s) 1412
BslFI GGGAC 2 cut(s) 15, 1172
BslI CCNNNNNNNGG 4 cut(s) 86, 745, 847, 1453
BsmAI GTCTC 3 cut(s) 10, 267, 474
BsmBI CGTCTC 1 cut(s) 267
BsmFI GGGAC 2 cut(s) 15, 1172
BsmI GAATGC 2 cut(s) 840, 1003
BsnI GGCC 4 cut(s) 776, 1090, 1109, 1482
Bso31I GGTCTC 1 cut(s) 10
Bsp1286I GDGCHC 2 cut(s) 81, 1412
Bsp1407I TGTACA 1 cut(s) 1277
Bsp143I GATC 5 cut(s) 59, 68, 502, 821, 1398
BspACI CCGC 4 cut(s) 117, 1309, 1357, 1360
BspANI GGCC 4 cut(s) 776, 1090, 1109, 1482
BspCNI CTCAG 2 cut(s) 172, 1052
BspFNI CGCG 1 cut(s) 464
BspHI TCATGA 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 1091
BspMAI CTGCAG 2 cut(s) 652, 1021
BspPI GGATC 2 cut(s) 63, 1406
BspTI CTTAAG 1 cut(s) 122
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 2 cut(s) 94, 663
BsrGI TGTACA 1 cut(s) 1277
BsrI ACTGG 3 cut(s) 632, 979, 1142
BssECI CCNNGG 1 cut(s) 1344
BssMI GATC 5 cut(s) 59, 68, 502, 821, 1398
BssT1I CCWWGG 1 cut(s) 1344
Bst4CI ACNGT 6 cut(s) 29, 42, 247, 963, 1327, 1487
Bst6I CTCTTC 1 cut(s) 414
BstAFI CTTAAG 1 cut(s) 122
BstAPI GCANNNNNTGC 1 cut(s) 1340
BstAUI TGTACA 1 cut(s) 1277
BstC8I GCNNGC 2 cut(s) 77, 618
BstDEI CTNAG 2 cut(s) 180, 1039
BstF5I GGATG 5 cut(s) 338, 555, 986, 1147, 1443
BstFNI CGCG 1 cut(s) 464
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 5 cut(s) 62, 71, 505, 824, 1401
BstMAI GTCTC 3 cut(s) 10, 267, 474
BstMBI GATC 5 cut(s) 59, 68, 502, 821, 1398
BstMWI GCNNNNNNNGC 4 cut(s) 653, 860, 1096, 1340
BstSFI CTRYAG 4 cut(s) 648, 743, 858, 1017
BstUI CGCG 1 cut(s) 464
BstV1I GCAGC 2 cut(s) 607, 634
BstV2I GAAGAC 1 cut(s) 1464
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuI GTATCC 1 cut(s) 964
BsuRI GGCC 4 cut(s) 776, 1090, 1109, 1482
BtsCI GGATG 5 cut(s) 338, 555, 986, 1147, 1443
BtsI GCAGTG 1 cut(s) 1338
BtsIMutI CAGTG 2 cut(s) 1338, 1492
Cac8I GCNNGC 2 cut(s) 77, 618
CaiI CAGNNNCTG 1 cut(s) 1025
CciI TCATGA 1 cut(s) 345
CfoI GCGC 1 cut(s) 466
Cfr13I GGNCC 3 cut(s) 114, 289, 1089
Csp6I GTAC 8 cut(s) 156, 243, 397, 635, 964, 1022, 1126, 1278
CviAII CATG 9 cut(s) 346, 546, 574, 602, 793, 864, 1223, 1281, 1435
CviQI GTAC 8 cut(s) 156, 243, 397, 635, 964, 1022, 1126, 1278
DdeI CTNAG 2 cut(s) 180, 1039
DpnI GATC 5 cut(s) 61, 70, 504, 823, 1400
DpnII GATC 5 cut(s) 59, 68, 502, 821, 1398
DraI TTTAAA 1 cut(s) 1005
EaeI YGGCCR 3 cut(s) 774, 1107, 1480
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
EciI GGCGGA 2 cut(s) 1298, 1346
Ecl136II GAGCTC 1 cut(s) 1410
Eco130I CCWWGG 1 cut(s) 1344
Eco24I GRGCYC 2 cut(s) 81, 1412
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 2 cut(s) 114, 289
Eco53kI GAGCTC 1 cut(s) 1410
EcoICRI GAGCTC 1 cut(s) 1410
EcoO109I RGGNCCY 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 1344
EcoT38I GRGCYC 2 cut(s) 81, 1412
ErhI CCWWGG 1 cut(s) 1344
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 9 cut(s) 349, 549, 577, 605, 796, 867, 1226, 1284, 1438
FaqI GGGAC 2 cut(s) 15, 1172
FatI CATG 9 cut(s) 345, 545, 573, 601, 792, 863, 1222, 1280, 1434
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 3 cut(s) 621, 648, 1360
FokI GGATG 5 cut(s) 345, 562, 973, 1154, 1430
FriOI GRGCYC 2 cut(s) 81, 1412
Fsp4HI GCNGC 3 cut(s) 621, 648, 1360
FspBI CTAG 2 cut(s) 1149, 1257
GlaI GCGC 1 cut(s) 465
GluI GCNGC 3 cut(s) 621, 648, 1360
GsuI CTGGAG 1 cut(s) 996
HaeIII GGCC 4 cut(s) 776, 1090, 1109, 1482
HhaI GCGC 1 cut(s) 466
Hin1II CATG 9 cut(s) 349, 549, 577, 605, 796, 867, 1226, 1284, 1438
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HincII GTYRAC 1 cut(s) 696
HindII GTYRAC 1 cut(s) 696
HinfI GANTC 5 cut(s) 282, 338, 517, 718, 878
HphI GGTGA 1 cut(s) 1261
Hpy166II GTNNAC 3 cut(s) 361, 696, 1074
Hpy188I TCNGA 5 cut(s) 64, 267, 763, 811, 1179
Hpy188III TCNNGA 3 cut(s) 9, 346, 1402
Hpy8I GTNNAC 3 cut(s) 361, 696, 1074
HpyAV CCTTC 5 cut(s) 43, 91, 214, 793, 965
HpyCH4III ACNGT 6 cut(s) 29, 42, 247, 963, 1327, 1487
HpyCH4V TGCA 9 cut(s) 196, 251, 324, 623, 650, 656, 905, 1019, 1334
HpyF10VI GCNNNNNNNGC 4 cut(s) 653, 860, 1096, 1340
HpyF3I CTNAG 2 cut(s) 180, 1039
Hsp92II CATG 9 cut(s) 349, 549, 577, 605, 796, 867, 1226, 1284, 1438
HspAI GCGC 1 cut(s) 464
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 5 cut(s) 59, 68, 502, 821, 1398
LmnI GCTCC 2 cut(s) 817, 843
Lsp1109I GCAGC 2 cut(s) 607, 634
LweI GCATC 2 cut(s) 205, 632
MaeI CTAG 2 cut(s) 1149, 1257
MaeIII GTNAC 4 cut(s) 418, 893, 1144, 1439
MalI GATC 5 cut(s) 61, 70, 504, 823, 1400
MboI GATC 5 cut(s) 59, 68, 502, 821, 1398
MboII GAAGA 6 cut(s) 292, 401, 404, 1051, 1369, 1469
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 2 cut(s) 81, 1412
MlsI TGGCCA 1 cut(s) 1482
MluCI AATT 6 cut(s) 12, 47, 444, 489, 1266, 1315
MluNI TGGCCA 1 cut(s) 1482
MlyI GAGTC 2 cut(s) 511, 712
MmeI TCCRAC 2 cut(s) 290, 1215
Mox20I TGGCCA 1 cut(s) 1482
MscI TGGCCA 1 cut(s) 1482
MseI TTAA 7 cut(s) 15, 44, 123, 447, 1004, 1047, 1265
MslI CAYNNNNRTG 3 cut(s) 350, 548, 560
Msp20I TGGCCA 1 cut(s) 1482
MspCI CTTAAG 1 cut(s) 122
Mva1269I GAATGC 2 cut(s) 840, 1003
MvnI CGCG 1 cut(s) 464
MwoI GCNNNNNNNGC 4 cut(s) 653, 860, 1096, 1340
NdeII GATC 5 cut(s) 59, 68, 502, 821, 1398
NlaIII CATG 9 cut(s) 349, 549, 577, 605, 796, 867, 1226, 1284, 1438
NlaIV GGNNCC 1 cut(s) 1091
NmeAIII GCCGAG 1 cut(s) 1085
NmuCI GTSAC 4 cut(s) 418, 893, 1144, 1439
PagI TCATGA 1 cut(s) 345
PctI GAATGC 2 cut(s) 840, 1003
PfeI GAWTC 3 cut(s) 282, 338, 878
PkrI GCNGC 3 cut(s) 622, 649, 1361
PleI GAGTC 2 cut(s) 511, 712
PpsI GAGTC 2 cut(s) 511, 712
PpuMI RGGWCCY 1 cut(s) 289
PshBI ATTAAT 1 cut(s) 447
Psp124BI GAGCTC 1 cut(s) 1412
Psp5II RGGWCCY 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 1091
PspPI GGNCC 3 cut(s) 114, 289, 1089
PspPPI RGGWCCY 1 cut(s) 289
PsrI GAACNNNNNNTAC 2 cut(s) 1109, 1141
PstI CTGCAG 2 cut(s) 652, 1021
PstNI CAGNNNCTG 1 cut(s) 1025
PsuI RGATCY 1 cut(s) 68
RsaI GTAC 8 cut(s) 157, 244, 398, 636, 965, 1023, 1127, 1279
RsaNI GTAC 8 cut(s) 156, 243, 397, 635, 964, 1022, 1126, 1278
RseI CAYNNNNRTG 3 cut(s) 350, 548, 560
SacI GAGCTC 1 cut(s) 1412
SaqAI TTAA 7 cut(s) 15, 44, 123, 447, 1004, 1047, 1265
SatI GCNGC 3 cut(s) 621, 648, 1360
Sau3AI GATC 5 cut(s) 59, 68, 502, 821, 1398
Sau96I GGNCC 3 cut(s) 114, 289, 1089
ScaI AGTACT 1 cut(s) 636
SchI GAGTC 2 cut(s) 511, 712
SduI GDGCHC 2 cut(s) 81, 1412
SfaNI GCATC 2 cut(s) 205, 632
SfcI CTRYAG 4 cut(s) 648, 743, 858, 1017
SinI GGWCC 2 cut(s) 114, 289
SmiMI CAYNNNNRTG 3 cut(s) 350, 548, 560
SmlI CTYRAG 3 cut(s) 122, 471, 1162
SmoI CTYRAG 3 cut(s) 122, 471, 1162
Sse9I AATT 6 cut(s) 12, 47, 444, 489, 1266, 1315
SsiI CCGC 4 cut(s) 117, 1309, 1357, 1360
SspMI CTAG 2 cut(s) 1149, 1257
SstI GAGCTC 1 cut(s) 1412
StyI CCWWGG 1 cut(s) 1344
TaaI ACNGT 6 cut(s) 29, 42, 247, 963, 1327, 1487
TaqI TCGA 6 cut(s) 797, 832, 844, 958, 1013, 1412
TasI AATT 6 cut(s) 12, 47, 444, 489, 1266, 1315
TatI WGTACW 5 cut(s) 396, 634, 963, 1125, 1277
TauI GCSGC 1 cut(s) 1362
TfiI GAWTC 3 cut(s) 282, 338, 878
Tru1I TTAA 7 cut(s) 15, 44, 123, 447, 1004, 1047, 1265
Tru9I TTAA 7 cut(s) 15, 44, 123, 447, 1004, 1047, 1265
TscAI CASTG 2 cut(s) 1345, 1492
TseFI GTSAC 4 cut(s) 418, 893, 1144, 1439
TseI GCWGC 2 cut(s) 620, 647
Tsp45I GTSAC 4 cut(s) 418, 893, 1144, 1439
TspDTI ATGAA 3 cut(s) 95, 233, 304
TspGWI ACGGA 2 cut(s) 1243, 1370
TspRI CASTG 2 cut(s) 1345, 1492
Vha464I CTTAAG 1 cut(s) 122
VpaK11BI GGWCC 2 cut(s) 114, 289
VspI ATTAAT 1 cut(s) 447
XapI RAATTY 2 cut(s) 47, 489
XspI CTAG 2 cut(s) 1149, 1257
ZrmI AGTACT 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.