Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003754

Physical Location & Seq

Genomic Coordinates Forward (+)

2053595 .. 2058132

Gene Structure 4538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g02790.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGTTTGGAGGTGTTGCAACAGTGCCTTCCAATAGTCCTCACTTAAGAAAGTCGGGTACAAGTGAGCTTGAAAATGGTGCAGAGGAGGGCTTCTTGCGTCTGATAGAGGGAAACGATATGAAGGGTGGAAGCATACCAAGGAGTACTGCTGCAATAATGCCATCTCCAGCTATGTTATGGAGATTTAAGGTCCTACTGTTCTTTGCTTGGGGTTTCATTTGTTGCAAGGTTGGATGGGATTCTGTCATGAGGATGAGTGCGGATCTGATAGATTTATTTCTATATGAGGCATTTTTGTATTATAATCCTCTACTTCTTGTGGTTAACTATGATGGTTTGGTTTTGGGGAGTCAATCTTTGGGTTTTTGCTCAGGGCAATGTAAACTATGCCAAAATTATTATTTGATCGATCAAAATCATTTGACCCACAGAGAAATATGGAAGTGTGCGACATGGATGACAATTGTTGTGCCGACAAGCATGACAGCTTATCTTTATCTCTATTCGCATGGAGAAGTGTCACTTGCTGCATCACAACCAGTACTATTATATGCTGCTGTTGCAATGCTTTTGATATTCCCTTTTGACATTTTCTATTTGTCATCTCGCTTTTACTTGTTAAGGACTCTTTGGCGTATAGTTCTCCCATTACAGGCAATATCATTTTCTGACTTTTTCCTGGCTGATATTTTGACCTCCATGTCTAAGGTGCTTTCAGATTTGGAGCGATCAGTATGTCGAATGGTCCATCGACAGGTTGCCACTATTGCATGGTTTGAAGCTGACTCAGTTTGTGGAAGTCACTCTGTTGCAATCCCTGTGGTTCTTGTTTTGCCTTACCTTTTTCGTTTGTTCCAATGCCTTCGACAATATAAGGATACTGGGGAGAAAACAACCCTTCTAAATGCTTTGAAGTATTCTACTGCAGTACCTGTGATTTTTCTTTCAGCCCTCAAATATCATGTCTTCCCTGAAAAGTGGTCGACTTTTTATCGGCCCCTCTGGCTTCTCTCAGGTGTTTTGAACTCTTTGTACTCGTTCTACTGGGACGTGACTAGAGATTGGGACTTAAGTGGTTTCACTAGGATTTTCAAGTTCAGCAAGCAACAATTCTTGTCAAACCTCGTACATGGACGGAAATGGGTTTACTTCTGGGTGATAGGTAGCAACCTGATTCTGCGTTGTACCTGGACTTACAAGCTCTCTTCCCATCTCCGCCACAATTACCTTACCGTATTCGCAATCACTGCCTTGGAGATTTTCCGCCGCTTCCAATGGGTTTTCTTCCGTGTAGAAAACGAGTTGAACAAGATGAGCTCTAAATCAAACATTCAGCTTTCCATGGCCGACAATCCAAATGAGGAAGACAGATTACTCGTCTCTAATGGCCACAGCGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EXS

Protein Analysis

467

Amino Acids

53.67

Weight (kDa)

8.87

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32295 AT2G32295
fragaria_vesca	FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560 FvH4_6g43560
malus_domestica	MD09G1104800.v1.1 MD17G1092500.v1.1
prunus_persica	Prupe.3G220700_v2.0.a1 Prupe.3G220700_v2.0.a1 Prupe.3G220700_v2.0.a1 Prupe.3G220700_v2.0.a1 Prupe.3G220700_v2.0.a1
pyrus_communis	pycom09g02790 pycom17g09010
rosa_chinensis	RchiOBHm_Chr2g0160141
rosa_laevigata	RLG00000021199
rosa_multiflora	Rmu_sc0002023.1_g000002
rosa_roxburghii	Rroxscaffold_2G00090020
rosa_rugosa	Rorug02G0481100 Rorug02G0481200 Rorug02G0481300
rosa_samantha	Rh2AG547200 Rh2BG560500 Rh2CG530900 Rh2DG569200
rosa_wichuraiana	Rw2G045250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
AasI	GACNNNNNNGTC	1 cut(s)	700
AccI	GTMKAC	1 cut(s)	983
AciI	CCGC	5 cut(s)	260, 1216, 1264, 1267, 1395
AclWI	GGATC	1 cut(s)	270
AcoI	YGGCCR	2 cut(s)	1344, 1387
AfaI	GTAC	7 cut(s)	58, 145, 543, 930, 1034, 1128, 1186
AfiI	CCNNNNNNNGG	2 cut(s)	652, 754
AflII	CTTAAG	2 cut(s)	43, 1069
AgsI	TTSAA	6 cut(s)	71, 779, 913, 1024, 1093, 1306
AjiI	CACGTC	1 cut(s)	1051
AjnI	CCWGG	2 cut(s)	678, 1187
AluBI	AGCT	7 cut(s)	67, 170, 488, 782, 1201, 1317, 1336
AluI	AGCT	7 cut(s)	67, 170, 488, 782, 1201, 1317, 1336
Alw21I	GWGCWC	1 cut(s)	1319
Alw26I	GTCTC	1 cut(s)	1384
AlwI	GGATC	1 cut(s)	270
AlwNI	CAGNNNCTG	1 cut(s)	932
AoxI	GGCC	3 cut(s)	995, 1344, 1387
ApeKI	GCWGC	3 cut(s)	149, 527, 554
ArsI	GACNNNNNNTTYG	2 cut(s)	948, 980
AspS9I	GGNCC	3 cut(s)	190, 745, 996
AsuHPI	GGTGA	1 cut(s)	1168
AvaII	GGWCC	2 cut(s)	190, 745
BaeI	ACNNNNGTAYC	2 cut(s)	912, 945
BalI	TGGCCA	1 cut(s)	1389
BanII	GRGCYC	1 cut(s)	1319
BarI	GAAGNNNNNNTAC	2 cut(s)	1356, 1388
BbsI	GAAGAC	2 cut(s)	958, 1371
Bbv12I	GWGCWC	1 cut(s)	1319
BbvI	GCAGC	3 cut(s)	136, 514, 541
BccI	CCATC	5 cut(s)	169, 228, 326, 756, 1218
BciT130I	CCWGG	2 cut(s)	680, 1189
BciVI	GTATCC	1 cut(s)	871
BcoDI	GTCTC	1 cut(s)	1384
BfaI	CTAG	2 cut(s)	1056, 1083
BfmI	CTRYAG	1 cut(s)	924
BfrI	CTTAAG	2 cut(s)	43, 1069
BfuI	GTATCC	1 cut(s)	871
BglI	GCCNNNNNGGC	1 cut(s)	1003
BisI	GCNGC	4 cut(s)	150, 528, 555, 1267
BlsI	GCNGC	4 cut(s)	151, 529, 556, 1268
BmcAI	AGTACT	2 cut(s)	145, 543
Bme1390I	CCNGG	2 cut(s)	680, 1189
Bme18I	GGWCC	2 cut(s)	190, 745
BmgBI	CACGTC	1 cut(s)	1051
BmgT120I	GGNCC	3 cut(s)	190, 745, 996
BmiI	GGNNCC	1 cut(s)	998
BmrFI	CCNGG	2 cut(s)	680, 1189
BmrI	ACTGGG	2 cut(s)	891, 1054
BmsI	GCATC	1 cut(s)	539
BmuI	ACTGGG	2 cut(s)	891, 1054
BpiI	GAAGAC	2 cut(s)	958, 1371
BpmI	CTGGAG	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	370
Bsa29I	ATCGAT	1 cut(s)	408
BsaBI	GATNNNNATC	1 cut(s)	414
BsaJI	CCNNGG	3 cut(s)	137, 1251, 1341
Bsc4I	CCNNNNNNNGG	2 cut(s)	652, 754
Bse1I	ACTGG	3 cut(s)	539, 886, 1049
Bse3DI	GCAATG	2 cut(s)	383, 570
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	2 cut(s)	680, 1189
BseCI	ATCGAT	1 cut(s)	408
BseDI	CCNNGG	3 cut(s)	137, 1251, 1341
BseGI	GGATG	3 cut(s)	239, 258, 462
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	2 cut(s)	652, 754
BseMI	GCAATG	2 cut(s)	383, 570
BseMII	CTCAG	3 cut(s)	384, 801, 1026
BseNI	ACTGG	3 cut(s)	539, 886, 1049
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	3 cut(s)	136, 514, 541
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	997, 1346, 1389
BshVI	ATCGAT	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	1319
BslFI	GGGAC	2 cut(s)	1061, 1079
BslI	CCNNNNNNNGG	2 cut(s)	652, 754
BsmAI	GTCTC	1 cut(s)	1384
BsmBI	CGTCTC	1 cut(s)	1384
BsmFI	GGGAC	2 cut(s)	1061, 1079
BsnI	GGCC	3 cut(s)	997, 1346, 1389
Bsp1286I	GDGCHC	1 cut(s)	1319
Bsp143I	GATC	4 cut(s)	262, 405, 409, 728
Bsp19I	CCATGG	1 cut(s)	1341
BspACI	CCGC	5 cut(s)	260, 1216, 1264, 1267, 1395
BspANI	GGCC	3 cut(s)	997, 1346, 1389
BspCNI	CTCAG	3 cut(s)	383, 800, 1025
BspDI	ATCGAT	1 cut(s)	408
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	998
BspMAI	CTGCAG	1 cut(s)	928
BspPI	GGATC	1 cut(s)	270
BspTI	CTTAAG	2 cut(s)	43, 1069
BsrDI	GCAATG	2 cut(s)	383, 570
BsrI	ACTGG	3 cut(s)	539, 886, 1049
BssECI	CCNNGG	3 cut(s)	137, 1251, 1341
BssMI	GATC	4 cut(s)	262, 405, 409, 728
BssT1I	CCWWGG	3 cut(s)	137, 1251, 1341
Bst2UI	CCWGG	2 cut(s)	680, 1189
Bst4CI	ACNGT	3 cut(s)	22, 198, 1234
Bst6I	CTCTTC	1 cut(s)	1210
BstAFI	CTTAAG	2 cut(s)	43, 1069
BstAPI	GCANNNNNTGC	1 cut(s)	1247
BstC8I	GCNNGC	1 cut(s)	1103
BstDEI	CTNAG	4 cut(s)	370, 705, 787, 1012
BstDSI	CCRYGG	1 cut(s)	1341
BstF5I	GGATG	3 cut(s)	239, 258, 462
BstKTI	GATC	4 cut(s)	265, 408, 412, 731
BstMAI	GTCTC	1 cut(s)	1384
BstMBI	GATC	4 cut(s)	262, 405, 409, 728
BstMWI	GCNNNNNNNGC	4 cut(s)	560, 767, 1003, 1247
BstNI	CCWGG	2 cut(s)	680, 1189
BstSCI	CCNGG	2 cut(s)	678, 1187
BstSFI	CTRYAG	1 cut(s)	924
BstV1I	GCAGC	3 cut(s)	136, 514, 541
BstV2I	GAAGAC	2 cut(s)	958, 1371
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
Bsu15I	ATCGAT	1 cut(s)	408
BsuI	GTATCC	1 cut(s)	871
BsuRI	GGCC	3 cut(s)	997, 1346, 1389
BsuTUI	ATCGAT	1 cut(s)	408
BtgI	CCRYGG	1 cut(s)	1341
BtrI	CACGTC	1 cut(s)	1051
BtsCI	GGATG	3 cut(s)	239, 258, 462
BtsI	GCAGTG	1 cut(s)	1245
BtsIMutI	CAGTG	2 cut(s)	27, 1245
Cac8I	GCNNGC	1 cut(s)	1103
CaiI	CAGNNNCTG	1 cut(s)	932
CciI	TCATGA	1 cut(s)	246
Cfr13I	GGNCC	3 cut(s)	190, 745, 996
ClaI	ATCGAT	1 cut(s)	408
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	7 cut(s)	57, 144, 542, 929, 1033, 1127, 1185
CspCI	CAANNNNNGTGG	2 cut(s)	801, 836
CviAII	CATG	9 cut(s)	247, 453, 481, 509, 700, 771, 962, 1130, 1342
CviQI	GTAC	7 cut(s)	57, 144, 542, 929, 1033, 1127, 1185
DdeI	CTNAG	4 cut(s)	370, 705, 787, 1012
DpnI	GATC	4 cut(s)	264, 407, 411, 730
DpnII	GATC	4 cut(s)	262, 405, 409, 728
DrdI	GACNNNNNNGTC	1 cut(s)	700
DseDI	GACNNNNNNGTC	1 cut(s)	700
EaeI	YGGCCR	2 cut(s)	1344, 1387
Eam1104I	CTCTTC	1 cut(s)	1210
EarI	CTCTTC	1 cut(s)	1210
EciI	GGCGGA	2 cut(s)	1205, 1253
Ecl136II	GAGCTC	1 cut(s)	1317
Eco130I	CCWWGG	3 cut(s)	137, 1251, 1341
Eco24I	GRGCYC	1 cut(s)	1319
Eco47I	GGWCC	2 cut(s)	190, 745
Eco53kI	GAGCTC	1 cut(s)	1317
EcoICRI	GAGCTC	1 cut(s)	1317
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	678, 1187
EcoT14I	CCWWGG	3 cut(s)	137, 1251, 1341
EcoT38I	GRGCYC	1 cut(s)	1319
ErhI	CCWWGG	3 cut(s)	137, 1251, 1341
Esp3I	CGTCTC	1 cut(s)	1384
FaeI	CATG	9 cut(s)	250, 456, 484, 512, 703, 774, 965, 1133, 1345
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FaqI	GGGAC	2 cut(s)	1061, 1079
FatI	CATG	9 cut(s)	246, 452, 480, 508, 699, 770, 961, 1129, 1341
FauI	CCCGC	1 cut(s)	1388
FblI	GTMKAC	1 cut(s)	983
Fnu4HI	GCNGC	4 cut(s)	150, 528, 555, 1267
FokI	GGATG	3 cut(s)	246, 265, 469
FriOI	GRGCYC	1 cut(s)	1319
Fsp4HI	GCNGC	4 cut(s)	150, 528, 555, 1267
FspBI	CTAG	2 cut(s)	1056, 1083
GluI	GCNGC	4 cut(s)	150, 528, 555, 1267
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	3 cut(s)	997, 1346, 1389
HgaI	GACGC	1 cut(s)	86
Hin1II	CATG	9 cut(s)	250, 456, 484, 512, 703, 774, 965, 1133, 1345
HincII	GTYRAC	2 cut(s)	325, 984
HindII	GTYRAC	2 cut(s)	325, 984
HinfI	GANTC	5 cut(s)	239, 349, 625, 785, 1174
HpaI	GTTAAC	1 cut(s)	325
HphI	GGTGA	1 cut(s)	1168
Hpy166II	GTNNAC	4 cut(s)	325, 383, 984, 1147
Hpy188I	TCNGA	4 cut(s)	102, 267, 670, 718
Hpy188III	TCNNGA	1 cut(s)	247
Hpy8I	GTNNAC	4 cut(s)	325, 383, 984, 1147
HpyAV	CCTTC	4 cut(s)	36, 115, 872, 908
HpyCH4III	ACNGT	3 cut(s)	22, 198, 1234
HpyCH4IV	ACGT	1 cut(s)	1050
HpyCH4V	TGCA	9 cut(s)	17, 80, 152, 225, 530, 563, 770, 812, 926
HpyF10VI	GCNNNNNNNGC	4 cut(s)	560, 767, 1003, 1247
HpyF3I	CTNAG	4 cut(s)	370, 705, 787, 1012
HpySE526I	ACGT	1 cut(s)	1050
Hsp92II	CATG	9 cut(s)	250, 456, 484, 512, 703, 774, 965, 1133, 1345
KspAI	GTTAAC	1 cut(s)	325
Kzo9I	GATC	4 cut(s)	262, 405, 409, 728
LmnI	GCTCC	1 cut(s)	724
Lsp1109I	GCAGC	3 cut(s)	136, 514, 541
LweI	GCATC	1 cut(s)	539
MaeI	CTAG	2 cut(s)	1056, 1083
MaeII	ACGT	1 cut(s)	1050
MaeIII	GTNAC	3 cut(s)	519, 800, 1051
MalI	GATC	4 cut(s)	264, 407, 411, 730
MboI	GATC	4 cut(s)	262, 405, 409, 728
MboII	GAAGA	4 cut(s)	958, 1197, 1276, 1376
MfeI	CAATTG	1 cut(s)	462
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	1319
MlsI	TGGCCA	1 cut(s)	1389
MluCI	AATT	4 cut(s)	394, 462, 1109, 1222
MluNI	TGGCCA	1 cut(s)	1389
MlyI	GAGTC	3 cut(s)	358, 619, 779
MmeI	TCCRAC	1 cut(s)	211
Mox20I	TGGCCA	1 cut(s)	1389
MscI	TGGCCA	1 cut(s)	1389
MseI	TTAA	5 cut(s)	44, 186, 324, 620, 1070
MslI	CAYNNNNRTG	1 cut(s)	251
Msp20I	TGGCCA	1 cut(s)	1389
MspA1I	CMGCKG	1 cut(s)	1395
MspCI	CTTAAG	2 cut(s)	43, 1069
MspR9I	CCNGG	2 cut(s)	680, 1189
MunI	CAATTG	1 cut(s)	462
MvaI	CCWGG	2 cut(s)	680, 1189
MwoI	GCNNNNNNNGC	4 cut(s)	560, 767, 1003, 1247
NcoI	CCATGG	1 cut(s)	1341
NdeII	GATC	4 cut(s)	262, 405, 409, 728
NlaIII	CATG	9 cut(s)	250, 456, 484, 512, 703, 774, 965, 1133, 1345
NlaIV	GGNNCC	1 cut(s)	998
NmuCI	GTSAC	3 cut(s)	519, 800, 1051
PagI	TCATGA	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	239, 1174
PkrI	GCNGC	4 cut(s)	151, 529, 556, 1268
PleI	GAGTC	3 cut(s)	357, 619, 779
PpsI	GAGTC	3 cut(s)	357, 619, 779
PpuMI	RGGWCCY	1 cut(s)	190
PsiI	TTATAA	1 cut(s)	303
Psp124BI	GAGCTC	1 cut(s)	1319
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	2 cut(s)	678, 1187
PspGI	CCWGG	2 cut(s)	678, 1187
PspN4I	GGNNCC	1 cut(s)	998
PspPI	GGNCC	3 cut(s)	190, 745, 996
PspPPI	RGGWCCY	1 cut(s)	190
PsrI	GAACNNNNNNTAC	2 cut(s)	1016, 1048
PstI	CTGCAG	1 cut(s)	928
PstNI	CAGNNNCTG	1 cut(s)	932
PsuI	RGATCY	1 cut(s)	262
RsaI	GTAC	7 cut(s)	58, 145, 543, 930, 1034, 1128, 1186
RsaNI	GTAC	7 cut(s)	57, 144, 542, 929, 1033, 1127, 1185
RseI	CAYNNNNRTG	1 cut(s)	251
SacI	GAGCTC	1 cut(s)	1319
SalI	GTCGAC	1 cut(s)	982
SaqAI	TTAA	5 cut(s)	44, 186, 324, 620, 1070
SatI	GCNGC	4 cut(s)	150, 528, 555, 1267
Sau3AI	GATC	4 cut(s)	262, 405, 409, 728
Sau96I	GGNCC	3 cut(s)	190, 745, 996
ScaI	AGTACT	2 cut(s)	145, 543
SchI	GAGTC	3 cut(s)	358, 619, 779
ScrFI	CCNGG	2 cut(s)	680, 1189
SduI	GDGCHC	1 cut(s)	1319
SfaNI	GCATC	1 cut(s)	539
SfcI	CTRYAG	1 cut(s)	924
SinI	GGWCC	2 cut(s)	190, 745
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	2 cut(s)	43, 1069
SmoI	CTYRAG	2 cut(s)	43, 1069
Sse9I	AATT	4 cut(s)	394, 462, 1109, 1222
SsiI	CCGC	5 cut(s)	260, 1216, 1264, 1267, 1395
SspMI	CTAG	2 cut(s)	1056, 1083
SstI	GAGCTC	1 cut(s)	1319
StyD4I	CCNGG	2 cut(s)	678, 1187
StyI	CCWWGG	3 cut(s)	137, 1251, 1341
TaaI	ACNGT	3 cut(s)	22, 198, 1234
TaiI	ACGT	1 cut(s)	1053
TaqI	TCGA	5 cut(s)	408, 739, 751, 865, 983
TasI	AATT	4 cut(s)	394, 462, 1109, 1222
TatI	WGTACW	3 cut(s)	143, 541, 1032
TauI	GCSGC	1 cut(s)	1269
TfiI	GAWTC	2 cut(s)	239, 1174
Tru1I	TTAA	5 cut(s)	44, 186, 324, 620, 1070
Tru9I	TTAA	5 cut(s)	44, 186, 324, 620, 1070
TscAI	CASTG	2 cut(s)	27, 1252
TseFI	GTSAC	3 cut(s)	519, 800, 1051
TseI	GCWGC	3 cut(s)	149, 527, 554
Tsp45I	GTSAC	3 cut(s)	519, 800, 1051
TspDTI	ATGAA	2 cut(s)	134, 205
TspGWI	ACGGA	2 cut(s)	1150, 1277
TspRI	CASTG	2 cut(s)	27, 1252
Vha464I	CTTAAG	2 cut(s)	43, 1069
VpaK11BI	GGWCC	2 cut(s)	190, 745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	174
XmiI	GTMKAC	1 cut(s)	983
XspI	CTAG	2 cut(s)	1056, 1083
ZrmI	AGTACT	2 cut(s)	145, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.