FvH4_6g53310

SWI SNF complex component SNF12 homolog

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
39111333 .. 39114609
3277 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53310.t3

Sequence Viewer

Length: 1674 bp
ATGTCGATGAATAATAATAACCCACCTAAGAATCTTGGAGCGTCTTCGTCGCCCTTTAGAAATTCCGGGATGGTGCCCCCATCTATGTCTGCAAACCCTTCATTTCCGCAACAGGCTCAAGCACAACTTGGGGCTGGTTTTCAAGCACAATTTCAGCTCTCCCAAGCACAGGCGATTGCGCAGGCTCAGTCAAAAGCACAAGCTCAAGCACATGCCCATGCCCAAGCCCAAGCACAGGCTCAAGCGCAAGCACATGCCCAAGCTCAGGCTCAAGCAGCTCACGCTCAATTCCAGGCTCAGTTACAGGCTCAGGCGATGTCGCTGAACCAGAACCAAGCAGGTTCCATGGGGAATTCACCCTCATATTCTACGCCCGGAAGTGGAAGTGTGAAGCGCTTCCCTCAGAAACCTCCAGTGCGCCCTCCTGGTCTTTCTCCTACAAACATGATCTCACCCATTAGAACCATGGACCTGTCAGCTGCTAATCGTAAAAAGAAGCAGAAGCTTCCCGAAAAACAGCTACAGGACAAAGTAGCCTCCATATTGCCTGAGTCTGCTCTATACACCCAGCTTCTTGAGTTTGAGGCTCGTGTCGATGCTGCGCTTACAAGAAAGAAAGTTGATATCCAAGAGGCTCTGAAGAGCCCCCCTTCTATTCAGAAAACACTTCGCATTTATGTTTTTAACACCTTTGCCAATCAGGTTCGTTCAATTCCACAGAAACCAAATGCTGATCCCCCTACTTGGACACTTAAGATAGTTGGAAGGATCTTGGAAGATGGGGTTGACCCTGATCAGCCTGGGGTGGTCCAGAAATCAAATCCCTTTTACCCAAAGTTTTCATCTTTCTTCAAGAGAGTAACCATTTCTTTGGACCAGAGGCTATATCCTGATAATCATATCATTAACTGGGAAAATGCAAGGTCACCTGCACCACATGAGGGATTTGAGGTGAAGAGAAAAGGGGACAAAGAGTTTACTGTGAATATACGCTTGGAAATGAATTATGCGCCTGAGAAGTTTAAGCTTTCACAACCTTTGATGGAAGTTCTTGGTATTGAGGTGGAAACTCGTCCAAGAATAATAGCTTCAATCTGGCACTATGTGAAGGCTAGGAAATTGCAGAACCCAAATGACCCCTCTTTCTTTAACTGTGATCCACCACTTCAAAGAGTGTTCGGAGAGGAAAAAATGAAATTTACTATGGTGTCCCAGAAGATATCTCAGCATCTGTTTCCGCCACAACCTATACATTTGGAGCATAAGATGAGGCTTTCTGGTAATAGTCCAGCTGGAACAGCATGTTATGATGTGTTGGTAGATGTGCCTTTTCCAATTCAAAGGGAATTATCTGCTCTAATGGCCAACTCAGAGAAAAACAAAGAAATTGATGCATGTGATGAAGCGATATGTGGAGCTATCAGAAAAATCCATGAGCATCGTCGCAGGCGAGCTTTTTTCCTTGGATTTAGTCAGTCACCTGTTGAATTCATCAATGCGCTGATTGAATCTCAAAGCAAAGATTTAAAGCTTGTAGCTGGAGTAGCGAGTCGTAGTGCTGAGAAAGAGCGCCGGTCAGATTTCTTCCATCAACCTTGGGTTGAAGATGCTGTTATCCGCTATTTGAACCGGAAGCCAGTTGCAGGAAGTGATGCTCCTCCTGGAAGCACATGA

Protein Analysis

558

Amino Acids

61.98

Weight (kDa)

9.67

Isoelectric Point (pI)

58.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 339 - 411 1.3e-23 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 937
Acc16I TGCGCA 1 cut(s) 180
Acc36I ACCTGC 2 cut(s) 329, 937
AccB1I GGYRCC 1 cut(s) 73
AciI CCGC 3 cut(s) 107, 1238, 1618
AclWI GGATC 3 cut(s) 728, 776, 1151
AcoI YGGCCR 1 cut(s) 1362
AcsI RAATTY 4 cut(s) 61, 352, 1196, 1487
AcuI CTGAAG 1 cut(s) 659
AdeI CACNNNGTG 1 cut(s) 1105
AfeI AGCGCT 1 cut(s) 395
AfiI CCNNNNNNNGG 7 cut(s) 169, 235, 265, 380, 744, 941, 1643
AflII CTTAAG 1 cut(s) 752
AjnI CCWGG 4 cut(s) 291, 424, 799, 1660
AjuI GAANNNNNNNTTGG 2 cut(s) 977, 1009
AlwI GGATC 3 cut(s) 728, 776, 1151
AlwNI CAGNNNCTG 1 cut(s) 1231
Aor51HI AGCGCT 1 cut(s) 395
AoxI GGCC 1 cut(s) 1362
ApeKI GCWGC 3 cut(s) 275, 479, 599
ApoI RAATTY 4 cut(s) 61, 352, 1196, 1487
Asp700I GAANNNNTTC 1 cut(s) 395
AspLEI GCGC 8 cut(s) 181, 247, 396, 420, 604, 1012, 1501, 1572
AspS9I GGNCC 3 cut(s) 469, 808, 874
AsuC2I CCSGG 2 cut(s) 67, 375
AsuHPI GGTGA 5 cut(s) 348, 444, 918, 964, 1470
AvaII GGWCC 3 cut(s) 469, 808, 874
BaeGI GKGCMC 1 cut(s) 78
BalI TGGCCA 1 cut(s) 1364
BanI GGYRCC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 647
BauI CACGAG 1 cut(s) 588
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 3 cut(s) 287, 466, 586
BccI CCATC 5 cut(s) 64, 88, 773, 1036, 1596
BciT130I CCWGG 4 cut(s) 293, 426, 801, 1662
BclI TGATCA 1 cut(s) 793
BcnI CCSGG 2 cut(s) 67, 375
BfaI CTAG 1 cut(s) 1113
BfmI CTRYAG 1 cut(s) 521
BfoI RGCGCY 2 cut(s) 397, 1573
BfrI CTTAAG 1 cut(s) 752
BfuAI ACCTGC 2 cut(s) 329, 937
BisI GCNGC 3 cut(s) 276, 480, 600
BlsI GCNGC 3 cut(s) 277, 481, 601
Bme1390I CCNGG 6 cut(s) 67, 293, 375, 426, 801, 1662
Bme18I GGWCC 3 cut(s) 469, 808, 874
BmgT120I GGNCC 3 cut(s) 469, 808, 874
BmiI GGNNCC 2 cut(s) 75, 343
BmrFI CCNGG 6 cut(s) 67, 293, 375, 426, 801, 1662
BmrI ACTGGG 1 cut(s) 919
BmsI GCATC 6 cut(s) 586, 1237, 1381, 1447, 1597, 1642
BmuI ACTGGG 1 cut(s) 919
BpiI GAAGAC 1 cut(s) 36
BpmI CTGGAG 2 cut(s) 396, 1560
Bpu10I CCTNAGC 2 cut(s) 264, 309
BpuEI CTTGAG 5 cut(s) 102, 189, 225, 255, 596
BpuMI CCSGG 2 cut(s) 67, 375
BsaJI CCNNGG 5 cut(s) 345, 465, 800, 1462, 1595
BsaWI WCCGGW 1 cut(s) 1629
Bsc4I CCNNNNNNNGG 7 cut(s) 169, 235, 265, 380, 744, 941, 1643
Bse118I RCCGGY 1 cut(s) 1572
Bse1I ACTGG 3 cut(s) 413, 914, 1637
BseBI CCWGG 4 cut(s) 293, 426, 801, 1662
BseDI CCNNGG 5 cut(s) 345, 465, 800, 1462, 1595
BseGI GGATG 1 cut(s) 75
BseLI CCNNNNNNNGG 7 cut(s) 169, 235, 265, 380, 744, 941, 1643
BseNI ACTGG 3 cut(s) 413, 914, 1637
BseRI GAGGAG 1 cut(s) 1647
BseSI GKGCMC 1 cut(s) 78
BseXI GCAGC 3 cut(s) 287, 466, 586
BseYI CCCAGC 1 cut(s) 567
BsgI GTGCAG 1 cut(s) 915
BshFI GGCC 1 cut(s) 1364
BshNI GGYRCC 1 cut(s) 73
BsiSI CCGG 4 cut(s) 66, 375, 1573, 1630
BslFI GGGAC 2 cut(s) 980, 1195
BslI CCNNNNNNNGG 7 cut(s) 169, 235, 265, 380, 744, 941, 1643
BsmFI GGGAC 2 cut(s) 980, 1195
BsnI GGCC 1 cut(s) 1364
Bsp1286I GDGCHC 2 cut(s) 78, 647
Bsp143I GATC 5 cut(s) 447, 733, 768, 793, 1156
Bsp19I CCATGG 2 cut(s) 345, 465
BspACI CCGC 3 cut(s) 107, 1238, 1618
BspANI GGCC 1 cut(s) 1364
BspLI GGNNCC 2 cut(s) 75, 343
BspMI ACCTGC 2 cut(s) 329, 937
BspPI GGATC 3 cut(s) 728, 776, 1151
BspQI GCTCTTC 1 cut(s) 635
BspT107I GGYRCC 1 cut(s) 73
BspTI CTTAAG 1 cut(s) 752
BsrFI RCCGGY 1 cut(s) 1572
BsrI ACTGG 3 cut(s) 413, 914, 1637
BssAI RCCGGY 1 cut(s) 1572
BssECI CCNNGG 5 cut(s) 345, 465, 800, 1462, 1595
BssMI GATC 5 cut(s) 447, 733, 768, 793, 1156
BssSI CACGAG 1 cut(s) 588
BssT1I CCWWGG 4 cut(s) 345, 465, 1462, 1595
Bst2BI CACGAG 1 cut(s) 588
Bst2UI CCWGG 4 cut(s) 293, 426, 801, 1662
Bst4CI ACNGT 2 cut(s) 982, 1154
Bst6I CTCTTC 2 cut(s) 635, 950
BstAFI CTTAAG 1 cut(s) 752
BstC8I GCNNGC 4 cut(s) 183, 249, 1448, 1452
BstDSI CCRYGG 2 cut(s) 345, 465
BstEII GGTNACC 1 cut(s) 924
BstF5I GGATG 1 cut(s) 75
BstH2I RGCGCY 2 cut(s) 397, 1573
BstHHI GCGC 8 cut(s) 181, 247, 396, 420, 604, 1012, 1501, 1572
BstKTI GATC 5 cut(s) 450, 736, 771, 796, 1159
BstMBI GATC 5 cut(s) 447, 733, 768, 793, 1156
BstMWI GCNNNNNNNGC 5 cut(s) 275, 281, 1298, 1361, 1544
BstNI CCWGG 4 cut(s) 293, 426, 801, 1662
BstNSI RCATGY 4 cut(s) 215, 257, 1305, 1398
BstPI GGTNACC 1 cut(s) 924
BstSCI CCNGG 6 cut(s) 65, 291, 373, 424, 799, 1660
BstSFI CTRYAG 1 cut(s) 521
BstSLI GKGCMC 1 cut(s) 78
BstV1I GCAGC 3 cut(s) 287, 466, 586
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 768
BstXI CCANNNNNNTGG 1 cut(s) 871
BstYI RGATCY 1 cut(s) 768
BsuRI GGCC 1 cut(s) 1364
BtgI CCRYGG 2 cut(s) 345, 465
BtgZI GCGATG 1 cut(s) 329
BtsCI GGATG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 420
BveI ACCTGC 2 cut(s) 329, 937
Cac8I GCNNGC 4 cut(s) 183, 249, 1448, 1452
CaiI CAGNNNCTG 1 cut(s) 1231
CfoI GCGC 8 cut(s) 181, 247, 396, 420, 604, 1012, 1501, 1572
Cfr10I RCCGGY 1 cut(s) 1572
Cfr13I GGNCC 3 cut(s) 469, 808, 874
CseI GACGC 1 cut(s) 30
DpnI GATC 5 cut(s) 449, 735, 770, 795, 1158
DpnII GATC 5 cut(s) 447, 733, 768, 793, 1156
DraI TTTAAA 1 cut(s) 1527
DraIII CACNNNGTG 1 cut(s) 1105
EaeI YGGCCR 1 cut(s) 1362
Eam1104I CTCTTC 2 cut(s) 635, 950
EarI CTCTTC 2 cut(s) 635, 950
EciI GGCGGA 1 cut(s) 1227
Eco130I CCWWGG 4 cut(s) 345, 465, 1462, 1595
Eco24I GRGCYC 1 cut(s) 647
Eco32I GATATC 2 cut(s) 625, 1221
Eco47I GGWCC 3 cut(s) 469, 808, 874
Eco47III AGCGCT 1 cut(s) 395
Eco57I CTGAAG 1 cut(s) 659
Eco91I GGTNACC 1 cut(s) 924
EcoO65I GGTNACC 1 cut(s) 924
EcoRI GAATTC 2 cut(s) 352, 1487
EcoRII CCWGG 4 cut(s) 291, 424, 799, 1660
EcoRV GATATC 2 cut(s) 625, 1221
EcoT14I CCWWGG 4 cut(s) 345, 465, 1462, 1595
EcoT22I ATGCAT 1 cut(s) 1396
EcoT38I GRGCYC 1 cut(s) 647
ErhI CCWWGG 4 cut(s) 345, 465, 1462, 1595
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FaqI GGGAC 2 cut(s) 980, 1195
FbaI TGATCA 1 cut(s) 793
Fnu4HI GCNGC 3 cut(s) 276, 480, 600
FokI GGATG 1 cut(s) 82
FriOI GRGCYC 1 cut(s) 647
Fsp4HI GCNGC 3 cut(s) 276, 480, 600
FspBI CTAG 1 cut(s) 1113
FspI TGCGCA 1 cut(s) 180
GlaI GCGC 8 cut(s) 180, 246, 395, 419, 603, 1011, 1500, 1571
GluI GCNGC 3 cut(s) 276, 480, 600
GsaI CCCAGC 1 cut(s) 571
GsuI CTGGAG 2 cut(s) 396, 1560
HaeII RGCGCY 2 cut(s) 397, 1573
HaeIII GGCC 1 cut(s) 1364
HapII CCGG 4 cut(s) 66, 375, 1573, 1630
HgaI GACGC 1 cut(s) 30
HhaI GCGC 8 cut(s) 181, 247, 396, 420, 604, 1012, 1501, 1572
Hin6I GCGC 8 cut(s) 179, 245, 394, 418, 602, 1010, 1499, 1570
HinP1I GCGC 8 cut(s) 179, 245, 394, 418, 602, 1010, 1499, 1570
HincII GTYRAC 1 cut(s) 787
HindII GTYRAC 1 cut(s) 787
HindIII AAGCTT 3 cut(s) 503, 1025, 1529
HinfI GANTC 4 cut(s) 31, 551, 1508, 1549
HpaII CCGG 4 cut(s) 66, 375, 1573, 1630
HphI GGTGA 5 cut(s) 348, 444, 918, 964, 1470
Hpy166II GTNNAC 2 cut(s) 787, 978
Hpy188I TCNGA 7 cut(s) 405, 639, 660, 1181, 1372, 1424, 1579
Hpy188III TCNNGA 5 cut(s) 509, 575, 811, 853, 890
Hpy8I GTNNAC 2 cut(s) 787, 978
Hpy99I CGWCG 2 cut(s) 52, 1446
HpyAV CCTTC 4 cut(s) 108, 660, 759, 1102
HpyCH4III ACNGT 2 cut(s) 982, 1154
HpyCH4V TGCA 6 cut(s) 92, 920, 932, 1123, 1394, 1643
HpyF10VI GCNNNNNNNGC 5 cut(s) 275, 281, 1298, 1361, 1544
HspAI GCGC 8 cut(s) 179, 245, 394, 418, 602, 1010, 1499, 1570
Ksp22I TGATCA 1 cut(s) 793
Kzo9I GATC 5 cut(s) 447, 733, 768, 793, 1156
LguI GCTCTTC 1 cut(s) 635
LmnI GCTCC 4 cut(s) 38, 1258, 1415, 1660
Lsp1109I GCAGC 3 cut(s) 287, 466, 586
LweI GCATC 6 cut(s) 586, 1237, 1381, 1447, 1597, 1642
MaeI CTAG 1 cut(s) 1113
MaeIII GTNAC 4 cut(s) 300, 859, 924, 1476
MalI GATC 5 cut(s) 449, 735, 770, 795, 1158
MboI GATC 5 cut(s) 447, 733, 768, 793, 1156
MboII GAAGA 8 cut(s) 36, 652, 788, 841, 967, 1228, 1576, 1616
MflI RGATCY 1 cut(s) 768
MhlI GDGCHC 2 cut(s) 78, 647
MlsI TGGCCA 1 cut(s) 1364
MluNI TGGCCA 1 cut(s) 1364
MlyI GAGTC 2 cut(s) 560, 1558
MmeI TCCRAC 1 cut(s) 742
Mox20I TGGCCA 1 cut(s) 1364
Mph1103I ATGCAT 1 cut(s) 1396
MroXI GAANNNNTTC 1 cut(s) 395
MscI TGGCCA 1 cut(s) 1364
MseI TTAA 6 cut(s) 684, 753, 906, 1023, 1149, 1526
MslI CAYNNNNRTG 1 cut(s) 216
Msp20I TGGCCA 1 cut(s) 1364
MspA1I CMGCKG 2 cut(s) 479, 1292
MspCI CTTAAG 1 cut(s) 752
MspI CCGG 4 cut(s) 66, 375, 1573, 1630
MspR9I CCNGG 6 cut(s) 67, 293, 375, 426, 801, 1662
MvaI CCWGG 4 cut(s) 293, 426, 801, 1662
MwoI GCNNNNNNNGC 5 cut(s) 275, 281, 1298, 1361, 1544
NciI CCSGG 2 cut(s) 67, 375
NcoI CCATGG 2 cut(s) 345, 465
NdeII GATC 5 cut(s) 447, 733, 768, 793, 1156
NlaIV GGNNCC 2 cut(s) 75, 343
NmuCI GTSAC 2 cut(s) 924, 1476
NsbI TGCGCA 1 cut(s) 180
NsiI ATGCAT 1 cut(s) 1396
NspI RCATGY 4 cut(s) 215, 257, 1305, 1398
PaqCI CACCTGC 1 cut(s) 937
PciSI GCTCTTC 1 cut(s) 635
PcsI WCGNNNNNNNCGW 1 cut(s) 1447
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 2 cut(s) 31, 1508
PfoI TCCNGGA 2 cut(s) 65, 1660
PkrI GCNGC 3 cut(s) 277, 481, 601
PleI GAGTC 2 cut(s) 559, 1557
PpsI GAGTC 2 cut(s) 559, 1557
Psp6I CCWGG 4 cut(s) 291, 424, 799, 1660
PspEI GGTNACC 1 cut(s) 924
PspFI CCCAGC 1 cut(s) 567
PspGI CCWGG 4 cut(s) 291, 424, 799, 1660
PspN4I GGNNCC 2 cut(s) 75, 343
PspPI GGNCC 3 cut(s) 469, 808, 874
PstNI CAGNNNCTG 1 cut(s) 1231
PsuI RGATCY 1 cut(s) 768
PvuII CAGCTG 2 cut(s) 479, 1292
RseI CAYNNNNRTG 1 cut(s) 216
SapI GCTCTTC 1 cut(s) 635
SaqAI TTAA 6 cut(s) 684, 753, 906, 1023, 1149, 1526
SatI GCNGC 3 cut(s) 276, 480, 600
Sau3AI GATC 5 cut(s) 447, 733, 768, 793, 1156
Sau96I GGNCC 3 cut(s) 469, 808, 874
SchI GAGTC 2 cut(s) 560, 1558
ScrFI CCNGG 6 cut(s) 67, 293, 375, 426, 801, 1662
SduI GDGCHC 2 cut(s) 78, 647
SfaNI GCATC 6 cut(s) 586, 1237, 1381, 1447, 1597, 1642
SfcI CTRYAG 1 cut(s) 521
SinI GGWCC 3 cut(s) 469, 808, 874
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 6 cut(s) 117, 204, 240, 270, 575, 752
SmoI CTYRAG 6 cut(s) 117, 204, 240, 270, 575, 752
SsiI CCGC 3 cut(s) 107, 1238, 1618
SspMI CTAG 1 cut(s) 1113
StyD4I CCNGG 6 cut(s) 65, 291, 373, 424, 799, 1660
StyI CCWWGG 4 cut(s) 345, 465, 1462, 1595
TaaI ACNGT 2 cut(s) 982, 1154
TaqI TCGA 2 cut(s) 5, 594
TfiI GAWTC 2 cut(s) 31, 1508
Tru1I TTAA 6 cut(s) 684, 753, 906, 1023, 1149, 1526
Tru9I TTAA 6 cut(s) 684, 753, 906, 1023, 1149, 1526
TscAI CASTG 1 cut(s) 420
TseFI GTSAC 2 cut(s) 924, 1476
TseI GCWGC 3 cut(s) 275, 479, 599
Tsp45I GTSAC 2 cut(s) 924, 1476
TspDTI ATGAA 7 cut(s) 23, 90, 831, 1016, 1208, 1416, 1480
TspRI CASTG 1 cut(s) 420
Vha464I CTTAAG 1 cut(s) 752
VpaK11BI GGWCC 3 cut(s) 469, 808, 874
XapI RAATTY 4 cut(s) 61, 352, 1196, 1487
XceI RCATGY 4 cut(s) 215, 257, 1305, 1398
XcmI CCANNNNNNNNNTGG 1 cut(s) 463
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 1 cut(s) 1113
Zsp2I ATGCAT 1 cut(s) 1396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.