Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007264

Physical Location & Seq

Genomic Coordinates Forward (+)

70775478 .. 70786088

Gene Structure 10611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0585000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTCTGCTCAAGCTCCCACCATTCCTCTCCTCACTCCTTACAAAATGGGAAAGTTCAATCTATCTCATCGAGTTGTTTTAGCACCCTTGACTAGACAGAGATCATACAACAATCTTCCTCAACCGCATGCCATCTTATATTACTCTCAGCGAACAACCAATGCGGGTCTTTTAATAGCTGAAGCCAGTGGAGTTTCTAATACAGCTCAAGGGTACGCGGATATGCCTGGTTTATGGACAAAGGAACAAGTTGAAGCATGGAAACCCATCGTTGATGCAGTTCATGCTAAAGGTGGTGTATTCTTCTGTCAGATCTGGCATGCGGGAAGAGTTTCAAATAGTGCTTTTCAACCAAATGGACAGGCTCCGATCTCTTGTACTGACAAGCCACTAACCGCTCAAGTACTATCTAATGGTGTTGATGTTGCTGAATTCACACCTCCAAGGCAATTAAGGACAGATGAAATCCCACAAATTGTCAATGACTTTAGACTTGCTGCAAGGAATGCAATCGAAGCTGGCTTTGATGGGGTTGAAATTCATGGAGCTAATGGTTACCTTATTGATCAGTTTATGAAAGACCAAGTGAATGATCGAACAGACCAATATGGTGGATCTCTAGAGAATCGCTGCCGATTTGCTCTGGAAATCATTGAAGCAGTTGTTAATGAAATAGGAGCAGACAAAGTTGGAATTAGATTATCTCCATTTGCCGACTATATGGAATCAGGGGATTCAAACCCTGAAGCATTAGGCCTTTATATGGTTCAATCCTTAAACAAATATGGGATTCTGTACTGCCATGTGATTGAGCCAAGAATGAAGGAAGCTGGAGTAAAGAGTGAAAGTGCTAGCAGTCTTCTACCCATGAGAGAAGCTTTTAGTGGTACCTTCATGGCTAGTGGTGGTTTTGACAGGGAAGATGGGAACAATGCAGTGGCTGAGGGTCGTGTAGATCTTATTGCTTACGGCCGTTGGTTCTTGTCTAATCCAGATTTGCCAAAGAGATTTGAGCTTAATGCTCCTCTAAACAAGTATGACAGAAGTACTTTCTATACTTCTGATCCAGTTGCTGGTTACACTGATTATCCATTTCTTGAAACCACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009909 GO:0009987 GO:0010224 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048580 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0099402 GO:1901360 GO:2000024 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SWIB

Protein Analysis

370

Amino Acids

40.8

Weight (kDa)

5.27

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_FMN	PF00724	10 - 343	2e-86	NADH:flavin oxidoreductase / NADH oxidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01890 AT5G14170
fragaria_vesca	FvH4_6g53310 FvH4_6g53310 FvH4_6g53310
malus_domestica	MD09G1011600.v1.1 MD17G1012300.v1.1
prunus_persica	Prupe.3G305400_v2.0.a1 Prupe.3G305400_v2.0.a1 Prupe.3G305400_v2.0.a1
pyrus_communis	pycom111g00990 pycom17g00980
rosa_chinensis	RchiOBHm_Chr2g0175471
rosa_laevigata	RLG00000022330
rosa_multiflora	Rmu_sc0003302.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077300
rosa_rugosa	Rorug02G0584700 Rorug02G0584800 Rorug02G0584900 Rorug02G0585000
rosa_samantha	Rh2AG664500 Rh2BG675200 Rh2CG638400 Rh2DG689200
rosa_wichuraiana	Rw2G054460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	887
AccB1I	GGYRCC	1 cut(s)	887
AccB7I	CCANNNNNTGG	1 cut(s)	1073
AccBSI	CCGCTC	1 cut(s)	398
AccII	CGCG	1 cut(s)	218
AciI	CCGC	5 cut(s)	125, 164, 218, 323, 396
AclWI	GGATC	2 cut(s)	622, 1058
AcoI	YGGCCR	1 cut(s)	970
AcsI	RAATTY	2 cut(s)	431, 537
AcuI	CTGAAG	2 cut(s)	201, 765
AfaI	GTAC	6 cut(s)	215, 379, 405, 797, 889, 1048
AfiI	CCNNNNNNNGG	2 cut(s)	763, 1073
AgsI	TTSAA	9 cut(s)	58, 254, 336, 350, 536, 656, 738, 770, 1100
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	8 cut(s)	14, 179, 206, 518, 548, 830, 878, 1015
AluI	AGCT	8 cut(s)	14, 179, 206, 518, 548, 830, 878, 1015
AlwI	GGATC	2 cut(s)	622, 1058
AlwNI	CAGNNNCTG	2 cut(s)	941, 1073
AoxI	GGCC	2 cut(s)	754, 970
ApeKI	GCWGC	2 cut(s)	497, 630
ApoI	RAATTY	2 cut(s)	431, 537
Asp700I	GAANNNNTTC	1 cut(s)	331
Asp718I	GGTACC	1 cut(s)	887
AsuNHI	GCTAGC	1 cut(s)	851
BanI	GGYRCC	1 cut(s)	887
BbsI	GAAGAC	1 cut(s)	851
BbvCI	CCTCAGC	1 cut(s)	942
BbvI	GCAGC	2 cut(s)	484, 617
BccI	CCATC	4 cut(s)	140, 275, 521, 917
BceAI	ACGGC	2 cut(s)	957, 985
BciT130I	CCWGG	1 cut(s)	228
BclI	TGATCA	1 cut(s)	565
BfaI	CTAG	4 cut(s)	93, 620, 852, 900
BglII	AGATCT	2 cut(s)	312, 955
BisI	GCNGC	2 cut(s)	498, 631
BlsI	GCNGC	2 cut(s)	499, 632
BmcAI	AGTACT	2 cut(s)	405, 1048
Bme1390I	CCNGG	1 cut(s)	228
BmiI	GGNNCC	2 cut(s)	366, 889
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	265
BmtI	GCTAGC	1 cut(s)	855
BpiI	GAAGAC	1 cut(s)	851
BpmI	CTGGAG	1 cut(s)	852
Bpu10I	CCTNAGC	1 cut(s)	942
BpuEI	CTTGAG	2 cut(s)	192, 384
BsaJI	CCNNGG	1 cut(s)	443
Bsc4I	CCNNNNNNNGG	2 cut(s)	763, 1073
Bse1I	ACTGG	2 cut(s)	186, 1067
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	443
BseLI	CCNNNNNNNGG	2 cut(s)	763, 1073
BseMII	CTCAG	2 cut(s)	161, 933
BseNI	ACTGG	2 cut(s)	186, 1067
BseRI	GAGGAG	2 cut(s)	20, 1014
BseX3I	CGGCCG	1 cut(s)	970
BseXI	GCAGC	2 cut(s)	484, 617
Bsh1236I	CGCG	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	973
BshFI	GGCC	2 cut(s)	756, 972
BshNI	GGYRCC	1 cut(s)	887
BsiEI	CGRYCG	1 cut(s)	973
BslI	CCNNNNNNNGG	2 cut(s)	763, 1073
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	2 cut(s)	756, 972
Bsp143I	GATC	8 cut(s)	101, 312, 369, 565, 592, 614, 955, 1063
BspACI	CCGC	5 cut(s)	125, 164, 218, 323, 396
BspANI	GGCC	2 cut(s)	756, 972
BspCNI	CTCAG	2 cut(s)	160, 934
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	2 cut(s)	366, 889
BspOI	GCTAGC	1 cut(s)	855
BspPI	GGATC	2 cut(s)	622, 1058
BspT107I	GGYRCC	1 cut(s)	887
BsrBI	CCGCTC	1 cut(s)	398
BsrI	ACTGG	2 cut(s)	186, 1067
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	8 cut(s)	101, 312, 369, 565, 592, 614, 955, 1063
BssT1I	CCWWGG	1 cut(s)	443
Bst2UI	CCWGG	1 cut(s)	228
Bst6I	CTCTTC	1 cut(s)	322
BstAPI	GCANNNNNTGC	2 cut(s)	284, 506
BstC8I	GCNNGC	4 cut(s)	129, 321, 520, 853
BstDEI	CTNAG	2 cut(s)	147, 942
BstEII	GGTNACC	1 cut(s)	554
BstFNI	CGCG	1 cut(s)	218
BstKTI	GATC	8 cut(s)	104, 315, 372, 568, 595, 617, 958, 1066
BstMBI	GATC	8 cut(s)	101, 312, 369, 565, 592, 614, 955, 1063
BstMCI	CGRYCG	1 cut(s)	973
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 506, 515
BstNI	CCWGG	1 cut(s)	228
BstNSI	RCATGY	2 cut(s)	131, 323
BstPI	GGTNACC	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	2 cut(s)	484, 617
BstV2I	GAAGAC	1 cut(s)	851
BstX2I	RGATCY	3 cut(s)	312, 614, 955
BstXI	CCANNNNNNTGG	1 cut(s)	611
BstYI	RGATCY	3 cut(s)	312, 614, 955
BstZI	CGGCCG	1 cut(s)	970
BsuRI	GGCC	2 cut(s)	756, 972
BtsI	GCAGTG	2 cut(s)	942, 1104
BtsIMutI	CAGTG	4 cut(s)	193, 942, 1080, 1104
Cac8I	GCNNGC	4 cut(s)	129, 321, 520, 853
CaiI	CAGNNNCTG	2 cut(s)	941, 1073
Csp6I	GTAC	6 cut(s)	214, 378, 404, 796, 888, 1047
CviAII	CATG	8 cut(s)	128, 258, 284, 320, 542, 803, 868, 895
CviQI	GTAC	6 cut(s)	214, 378, 404, 796, 888, 1047
DdeI	CTNAG	2 cut(s)	147, 942
DpnI	GATC	8 cut(s)	103, 314, 371, 567, 594, 616, 957, 1065
DpnII	GATC	8 cut(s)	101, 312, 369, 565, 592, 614, 955, 1063
EaeI	YGGCCR	1 cut(s)	970
EagI	CGGCCG	1 cut(s)	970
Eam1104I	CTCTTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	322
EclXI	CGGCCG	1 cut(s)	970
Eco130I	CCWWGG	1 cut(s)	443
Eco147I	AGGCCT	1 cut(s)	756
Eco52I	CGGCCG	1 cut(s)	970
Eco57I	CTGAAG	2 cut(s)	201, 765
Eco91I	GGTNACC	1 cut(s)	554
EcoO65I	GGTNACC	1 cut(s)	554
EcoRI	GAATTC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	443
ErhI	CCWWGG	1 cut(s)	443
FaeI	CATG	8 cut(s)	131, 261, 287, 323, 545, 806, 871, 898
FatI	CATG	8 cut(s)	127, 257, 283, 319, 541, 802, 867, 894
FauI	CCCGC	2 cut(s)	157, 316
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	2 cut(s)	498, 631
Fsp4HI	GCNGC	2 cut(s)	498, 631
FspBI	CTAG	4 cut(s)	93, 620, 852, 900
GluI	GCNGC	2 cut(s)	498, 631
GsuI	CTGGAG	1 cut(s)	852
HaeIII	GGCC	2 cut(s)	756, 972
Hin1II	CATG	8 cut(s)	131, 261, 287, 323, 545, 806, 871, 898
HindIII	AAGCTT	1 cut(s)	876
HinfI	GANTC	4 cut(s)	625, 725, 734, 790
Hpy188I	TCNGA	3 cut(s)	312, 369, 1063
Hpy188III	TCNNGA	4 cut(s)	620, 644, 992, 1097
HpyAV	CCTTC	2 cut(s)	817, 901
HpyCH4V	TGCA	4 cut(s)	278, 500, 509, 935
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 506, 515
HpyF3I	CTNAG	2 cut(s)	147, 942
Hsp92II	CATG	8 cut(s)	131, 261, 287, 323, 545, 806, 871, 898
KpnI	GGTACC	1 cut(s)	891
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	8 cut(s)	101, 312, 369, 565, 592, 614, 955, 1063
LmnI	GCTCC	5 cut(s)	19, 370, 545, 677, 1027
Lsp1109I	GCAGC	2 cut(s)	484, 617
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	4 cut(s)	93, 620, 852, 900
MaeIII	GTNAC	2 cut(s)	554, 1076
MalI	GATC	8 cut(s)	103, 314, 371, 567, 594, 616, 957, 1065
MbiI	CCGCTC	1 cut(s)	398
MboI	GATC	8 cut(s)	101, 312, 369, 565, 592, 614, 955, 1063
MboII	GAAGA	5 cut(s)	107, 295, 339, 851, 932
MflI	RGATCY	3 cut(s)	312, 614, 955
MluCI	AATT	5 cut(s)	431, 449, 474, 537, 693
MmeI	TCCRAC	1 cut(s)	670
MnlI	CCTC	6 cut(s)	36, 41, 129, 450, 937, 1035
MroXI	GAANNNNTTC	1 cut(s)	331
MseI	TTAA	6 cut(s)	173, 452, 666, 776, 1017, 1111
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	3 cut(s)	284, 506, 515
NdeII	GATC	8 cut(s)	101, 312, 369, 565, 592, 614, 955, 1063
NheI	GCTAGC	1 cut(s)	851
NlaIII	CATG	8 cut(s)	131, 261, 287, 323, 545, 806, 871, 898
NlaIV	GGNNCC	2 cut(s)	366, 889
NspI	RCATGY	2 cut(s)	131, 323
PaeI	GCATGC	2 cut(s)	131, 323
PceI	AGGCCT	1 cut(s)	756
PctI	GAATGC	1 cut(s)	511
PdmI	GAANNNNTTC	1 cut(s)	331
PfeI	GAWTC	4 cut(s)	625, 725, 734, 790
PflMI	CCANNNNNTGG	1 cut(s)	1073
PkrI	GCNGC	2 cut(s)	499, 632
Psp6I	CCWGG	1 cut(s)	226
PspEI	GGTNACC	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	2 cut(s)	366, 889
PstNI	CAGNNNCTG	2 cut(s)	941, 1073
PsuI	RGATCY	3 cut(s)	312, 614, 955
RsaI	GTAC	6 cut(s)	215, 379, 405, 797, 889, 1048
RsaNI	GTAC	6 cut(s)	214, 378, 404, 796, 888, 1047
SaqAI	TTAA	6 cut(s)	173, 452, 666, 776, 1017, 1111
SatI	GCNGC	2 cut(s)	498, 631
Sau3AI	GATC	8 cut(s)	101, 312, 369, 565, 592, 614, 955, 1063
ScaI	AGTACT	2 cut(s)	405, 1048
ScrFI	CCNGG	1 cut(s)	228
SfaNI	GCATC	1 cut(s)	265
SmlI	CTYRAG	3 cut(s)	9, 207, 399
SmoI	CTYRAG	3 cut(s)	9, 207, 399
SphI	GCATGC	2 cut(s)	131, 323
Sse9I	AATT	5 cut(s)	431, 449, 474, 537, 693
SseBI	AGGCCT	1 cut(s)	756
SsiI	CCGC	5 cut(s)	125, 164, 218, 323, 396
SspMI	CTAG	4 cut(s)	93, 620, 852, 900
StuI	AGGCCT	1 cut(s)	756
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	443
TaqI	TCGA	3 cut(s)	70, 513, 595
TasI	AATT	5 cut(s)	431, 449, 474, 537, 693
TatI	WGTACW	4 cut(s)	377, 403, 795, 1046
TfiI	GAWTC	4 cut(s)	625, 725, 734, 790
Tru1I	TTAA	6 cut(s)	173, 452, 666, 776, 1017, 1111
Tru9I	TTAA	6 cut(s)	173, 452, 666, 776, 1017, 1111
TscAI	CASTG	4 cut(s)	193, 942, 1087, 1111
TseI	GCWGC	2 cut(s)	497, 630
TspDTI	ATGAA	7 cut(s)	272, 477, 530, 590, 684, 836, 883
TspRI	CASTG	4 cut(s)	193, 942, 1087, 1111
Van91I	CCANNNNNTGG	1 cut(s)	1073
XapI	RAATTY	2 cut(s)	431, 537
XbaI	TCTAGA	1 cut(s)	619
XceI	RCATGY	2 cut(s)	131, 323
XmnI	GAANNNNTTC	1 cut(s)	331
XspI	CTAG	4 cut(s)	93, 620, 852, 900
ZrmI	AGTACT	2 cut(s)	405, 1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.