MD09G1011600.v1.1

SWI SNF complex component SNF12 homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
761561 .. 763753
2193 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1011600.v1.1.491

Sequence Viewer

Length: 1623 bp
ATGTCTATGAACAATAATAACCCACCTAAGAGTCTTGGAGCCCCTTCGTCGCCCTTTGGCAATGTCGGTATGGTAGGGCAATCTATGTCTGCAAACCCTACATTTCAACAATCGCAAGCCCAAACACAGATTGGGGCTGGTTACCAAGGTCAGTTTCAGCTCTCCCAAGCCCAGGCTATTGCCCATGCTCAGTCAAAAGCTCATGCACAAGTGGCTCATGCCCAATTCCAAGCTCAGTTGCAAGCTCAGGCGATGGCCCTTAACCAGAACCAATCAGTTGGCATGGCGAATTTGGGGTCATCTTCACCTTCCTTTTCCACACCTGGGAATGCAAGTGCCAAGCGCTACCCCCAAAAACCACCAGTGCGCCCTTCTGGTGCTTCTCCTATGCACACGATGTCACCTCTGAGAACCATGGAACTCAACCCTGCTGCTCGTAAAAAGAAGCAGAAGCTTCCCGATAAACAGCTACAAGACAAAGTAGCCACCATTCTGCCTGAATCTGCTCTCTACACCCAGCTTCTCGAGTTTGAGGCTCGTGTTGATTCTGCCCTTGCAAGAAAGAAAGTTGACATCCAAGAGGCCCTTAAAAGCCCGCCTTGCATTCAGAAAACGCTGCGGATTTATGTTTTTAACACTTTTGCTAATCAGGTTCGCTCAATTCCACAGAAGCCAAATGCTGATCCCCCTACTTGGACACTTAAAATAGTTGGGAGGATCTTGGAAGATGGGGTTGATCCTGACCAGCCTGGAATGGTCCAGAAATCAAATCCCTTTTATCCAAAGTTCTCATCTTTCTTCAAGAGAGTAACAATTTCTTTGGATCAGAGACTATATCCTGAGAATCATATCATTTTGTGGGAAAATGCTAGATCGCCGGCACCTCATGAGGGCTTTGAGGTGAAGAGAAAAGGGGACAAAGAATTTACTGTGAACATACGGTTGGAAATGAATTATGCACCTGAGAAGTATAAGCTTTCTCAACCATTGATGGAAGTTCTTGGTATTGAGGTTGAAACCCGCCCCAGGATAATAGCTTCAATCTGGCACTATGTGAAAGCTAGGAAATTGCAGAACCAGCATGACCCCTCTTTCTTTAACTGTGATCCACCACTTCAGAAAGTATTTGGGGAAGAAAAGATGAAATTCACCATGGTATCGCAGAAGATATCTCAGCATTTGTTCCCCCCGCAACCTATACATTTGGAGCATAAGATAAAGCTTTCAGGAAATAGTCCAGCTGGAACTGCATGTTATGATGTGCTGGTTGATGTTCCTTTCCCAATCCAAAGGGAACTGTCTTCTCTTTTGGCCAACTCCGAGAAGAACAAAGAGATTGATACCTGTGATGAAGCAATATGTGCAGCTATCAGAAAAATCCATGAGCATCGTCGCAGGCGAGCTTTTTTCCTTGGGTTTAGTCAATCTCCTGTAGAATTTATCAATGCACTGATTGAATCCCAAAACAAAGATTTAAAACTTGTAGCTGGAGTAGCAAGCCGTAGTGCTGAAAAACAGAGGCGATCAGATTTCTTCCACCAGCCATGGGTTGAAGATGCTGTTATCCGGTATCTGAATCGTAAGCCAGGTGCAGGAAGTGATGCCGCTCCTGGAAGCATATGA

Protein Analysis

541

Amino Acids

60.31

Weight (kDa)

9.59

Isoelectric Point (pI)

60.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 322 - 394 2.8e-23 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 880
AccBSI CCGCTC 1 cut(s) 1607
AciI CCGC 5 cut(s) 596, 619, 1021, 1190, 1605
AclWI GGATC 5 cut(s) 677, 725, 731, 831, 1100
AcoI YGGCCR 1 cut(s) 1311
AcsI RAATTY 4 cut(s) 289, 923, 1145, 1436
AcuI CTGAAG 1 cut(s) 1100
AdeI CACNNNGTG 1 cut(s) 1054
AfeI AGCGCT 1 cut(s) 344
AfiI CCNNNNNNNGG 7 cut(s) 172, 324, 693, 890, 1026, 1546, 1592
AgsI TTSAA 6 cut(s) 107, 802, 1016, 1041, 1457, 1553
AjnI CCWGG 6 cut(s) 171, 322, 748, 1025, 1585, 1609
AjuI GAANNNNNNNTTGG 4 cut(s) 138, 170, 926, 958
Alw26I GTCTC 1 cut(s) 823
AlwI GGATC 5 cut(s) 677, 725, 731, 831, 1100
Ama87I CYCGRG 1 cut(s) 524
Aor51HI AGCGCT 1 cut(s) 344
AoxI GGCC 3 cut(s) 255, 582, 1311
ApeKI GCWGC 3 cut(s) 431, 616, 1364
ApoI RAATTY 4 cut(s) 289, 923, 1145, 1436
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
AspLEI GCGC 2 cut(s) 345, 369
AspS9I GGNCC 3 cut(s) 256, 583, 757
AsuHPI GGTGA 4 cut(s) 297, 393, 913, 1141
AvaI CYCGRG 1 cut(s) 524
AvaII GGWCC 1 cut(s) 757
BaeI ACNNNNGTAYC 2 cut(s) 1140, 1173
BalI TGGCCA 1 cut(s) 1313
BanI GGYRCC 1 cut(s) 880
BanII GRGCYC 1 cut(s) 43
BauI CACGAG 1 cut(s) 537
BbsI GAAGAC 1 cut(s) 1293
BbvI GCAGC 3 cut(s) 418, 603, 1376
BccI CCATC 3 cut(s) 247, 722, 985
BceAI ACGGC 1 cut(s) 1485
BciT130I CCWGG 6 cut(s) 173, 324, 750, 1027, 1587, 1611
BcoDI GTCTC 1 cut(s) 823
BfaI CTAG 2 cut(s) 870, 1062
BfmI CTRYAG 1 cut(s) 1431
BfoI RGCGCY 1 cut(s) 346
BisI GCNGC 4 cut(s) 432, 617, 1365, 1605
BlsI GCNGC 4 cut(s) 433, 618, 1366, 1606
Bme1390I CCNGG 6 cut(s) 173, 324, 750, 1027, 1587, 1611
Bme18I GGWCC 1 cut(s) 757
BmeT110I CYCGRG 1 cut(s) 524
BmgT120I GGNCC 3 cut(s) 256, 583, 757
BmiI GGNNCC 2 cut(s) 40, 882
BmrFI CCNGG 6 cut(s) 173, 324, 750, 1027, 1587, 1611
BmsI GCATC 3 cut(s) 1396, 1546, 1591
BpiI GAAGAC 1 cut(s) 1293
BpmI CTGGAG 1 cut(s) 1509
Bpu10I CCTNAGC 1 cut(s) 246
BsaJI CCNNGG 8 cut(s) 145, 171, 323, 414, 1025, 1152, 1411, 1544
BsaWI WCCGGW 1 cut(s) 1566
Bsc4I CCNNNNNNNGG 7 cut(s) 172, 324, 693, 890, 1026, 1546, 1592
Bse118I RCCGGY 1 cut(s) 877
Bse1I ACTGG 1 cut(s) 362
Bse3DI GCAATG 1 cut(s) 67
BseBI CCWGG 6 cut(s) 173, 324, 750, 1027, 1587, 1611
BseDI CCNNGG 8 cut(s) 145, 171, 323, 414, 1025, 1152, 1411, 1544
BseGI GGATG 1 cut(s) 573
BseLI CCNNNNNNNGG 7 cut(s) 172, 324, 693, 890, 1026, 1546, 1592
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 7 cut(s) 203, 248, 260, 398, 831, 954, 1187
BseNI ACTGG 1 cut(s) 362
BseXI GCAGC 3 cut(s) 418, 603, 1376
BseYI CCCAGC 1 cut(s) 516
BsgI GTGCAG 2 cut(s) 1383, 1611
BshFI GGCC 3 cut(s) 257, 584, 1313
BshNI GGYRCC 1 cut(s) 880
BsiHKCI CYCGRG 1 cut(s) 524
BsiSI CCGG 2 cut(s) 878, 1567
BslFI GGGAC 1 cut(s) 929
BslI CCNNNNNNNGG 7 cut(s) 172, 324, 693, 890, 1026, 1546, 1592
BsmAI GTCTC 1 cut(s) 823
BsmFI GGGAC 1 cut(s) 929
BsmI GAATGC 2 cut(s) 334, 603
BsnI GGCC 3 cut(s) 257, 584, 1313
BsoBI CYCGRG 1 cut(s) 524
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 7 cut(s) 682, 717, 736, 823, 872, 1105, 1523
Bsp19I CCATGG 3 cut(s) 414, 1152, 1544
BspACI CCGC 5 cut(s) 596, 619, 1021, 1190, 1605
BspANI GGCC 3 cut(s) 257, 584, 1313
BspCNI CTCAG 7 cut(s) 202, 247, 259, 399, 832, 955, 1186
BspHI TCATGA 1 cut(s) 886
BspLI GGNNCC 2 cut(s) 40, 882
BspPI GGATC 5 cut(s) 677, 725, 731, 831, 1100
BspT107I GGYRCC 1 cut(s) 880
BsrBI CCGCTC 1 cut(s) 1607
BsrDI GCAATG 1 cut(s) 67
BsrFI RCCGGY 1 cut(s) 877
BsrI ACTGG 1 cut(s) 362
BssAI RCCGGY 1 cut(s) 877
BssECI CCNNGG 8 cut(s) 145, 171, 323, 414, 1025, 1152, 1411, 1544
BssMI GATC 7 cut(s) 682, 717, 736, 823, 872, 1105, 1523
BssSI CACGAG 1 cut(s) 537
BssT1I CCWWGG 5 cut(s) 145, 414, 1152, 1411, 1544
Bst2BI CACGAG 1 cut(s) 537
Bst2UI CCWGG 6 cut(s) 173, 324, 750, 1027, 1587, 1611
Bst4CI ACNGT 4 cut(s) 931, 942, 1103, 1299
Bst6I CTCTTC 1 cut(s) 899
BstAPI GCANNNNNTGC 1 cut(s) 1361
BstC8I GCNNGC 7 cut(s) 117, 243, 596, 879, 1397, 1401, 1498
BstDEI CTNAG 8 cut(s) 27, 189, 234, 246, 407, 840, 963, 1173
BstDSI CCRYGG 3 cut(s) 414, 1152, 1544
BstEII GGTNACC 1 cut(s) 140
BstF5I GGATG 1 cut(s) 573
BstH2I RGCGCY 1 cut(s) 346
BstHHI GCGC 2 cut(s) 345, 369
BstKTI GATC 7 cut(s) 685, 720, 739, 826, 875, 1108, 1526
BstMAI GTCTC 1 cut(s) 823
BstMBI GATC 7 cut(s) 682, 717, 736, 823, 872, 1105, 1523
BstMWI GCNNNNNNNGC 6 cut(s) 212, 600, 1078, 1247, 1361, 1493
BstNI CCWGG 6 cut(s) 173, 324, 750, 1027, 1587, 1611
BstNSI RCATGY 1 cut(s) 1254
BstPI GGTNACC 1 cut(s) 140
BstSCI CCNGG 6 cut(s) 171, 322, 748, 1025, 1585, 1609
BstSFI CTRYAG 1 cut(s) 1431
BstV1I GCAGC 3 cut(s) 418, 603, 1376
BstV2I GAAGAC 1 cut(s) 1293
BstX2I RGATCY 1 cut(s) 717
BstXI CCANNNNNNTGG 1 cut(s) 278
BstYI RGATCY 1 cut(s) 717
BsuRI GGCC 3 cut(s) 257, 584, 1313
BtgI CCRYGG 3 cut(s) 414, 1152, 1544
BtgZI GCGATG 1 cut(s) 266
BtsCI GGATG 1 cut(s) 573
BtsIMutI CAGTG 2 cut(s) 369, 1448
Cac8I GCNNGC 7 cut(s) 117, 243, 596, 879, 1397, 1401, 1498
CciI TCATGA 1 cut(s) 886
CfoI GCGC 2 cut(s) 345, 369
Cfr10I RCCGGY 1 cut(s) 877
Cfr13I GGNCC 3 cut(s) 256, 583, 757
DdeI CTNAG 8 cut(s) 27, 189, 234, 246, 407, 840, 963, 1173
DpnI GATC 7 cut(s) 684, 719, 738, 825, 874, 1107, 1525
DpnII GATC 7 cut(s) 682, 717, 736, 823, 872, 1105, 1523
DraI TTTAAA 1 cut(s) 1476
DraIII CACNNNGTG 1 cut(s) 1054
EaeI YGGCCR 1 cut(s) 1311
Eam1104I CTCTTC 1 cut(s) 899
EarI CTCTTC 1 cut(s) 899
Eco130I CCWWGG 5 cut(s) 145, 414, 1152, 1411, 1544
Eco24I GRGCYC 1 cut(s) 43
Eco32I GATATC 1 cut(s) 1170
Eco47I GGWCC 1 cut(s) 757
Eco47III AGCGCT 1 cut(s) 344
Eco57I CTGAAG 1 cut(s) 1100
Eco88I CYCGRG 1 cut(s) 524
Eco91I GGTNACC 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 583
EcoO65I GGTNACC 1 cut(s) 140
EcoRII CCWGG 6 cut(s) 171, 322, 748, 1025, 1585, 1609
EcoRV GATATC 1 cut(s) 1170
EcoT14I CCWWGG 5 cut(s) 145, 414, 1152, 1411, 1544
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 5 cut(s) 145, 414, 1152, 1411, 1544
FalI AAGNNNNNCTT 4 cut(s) 570, 602, 583, 615
FaqI GGGAC 1 cut(s) 929
FauI CCCGC 3 cut(s) 603, 1028, 1197
FauNDI CATATG 1 cut(s) 1619
Fnu4HI GCNGC 4 cut(s) 432, 617, 1365, 1605
FokI GGATG 1 cut(s) 560
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 4 cut(s) 432, 617, 1365, 1605
FspBI CTAG 2 cut(s) 870, 1062
GlaI GCGC 2 cut(s) 344, 368
GluI GCNGC 4 cut(s) 432, 617, 1365, 1605
GsaI CCCAGC 1 cut(s) 520
GsuI CTGGAG 1 cut(s) 1509
HaeII RGCGCY 1 cut(s) 346
HaeIII GGCC 3 cut(s) 257, 584, 1313
HapII CCGG 2 cut(s) 878, 1567
HhaI GCGC 2 cut(s) 345, 369
Hin6I GCGC 2 cut(s) 343, 367
HinP1I GCGC 2 cut(s) 343, 367
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HindIII AAGCTT 3 cut(s) 452, 974, 1220
HinfI GANTC 6 cut(s) 31, 500, 545, 844, 1457, 1576
HpaII CCGG 2 cut(s) 878, 1567
HphI GGTGA 4 cut(s) 297, 393, 913, 1141
Hpy166II GTNNAC 2 cut(s) 571, 934
Hpy188I TCNGA 8 cut(s) 408, 609, 828, 1119, 1321, 1373, 1528, 1575
Hpy188III TCNNGA 8 cut(s) 458, 524, 740, 760, 802, 839, 887, 1227
Hpy8I GTNNAC 2 cut(s) 571, 934
Hpy99I CGWCG 2 cut(s) 52, 1395
HpyAV CCTTC 3 cut(s) 54, 318, 381
HpyCH4III ACNGT 4 cut(s) 931, 942, 1103, 1299
HpyF10VI GCNNNNNNNGC 6 cut(s) 212, 600, 1078, 1247, 1361, 1493
HpyF3I CTNAG 8 cut(s) 27, 189, 234, 246, 407, 840, 963, 1173
HspAI GCGC 2 cut(s) 343, 367
KroI GCCGGC 1 cut(s) 877
KroNI GCCGGC 1 cut(s) 879
Kzo9I GATC 7 cut(s) 682, 717, 736, 823, 872, 1105, 1523
LmnI GCTCC 3 cut(s) 38, 1207, 1612
Lsp1109I GCAGC 3 cut(s) 418, 603, 1376
LweI GCATC 3 cut(s) 1396, 1546, 1591
MaeI CTAG 2 cut(s) 870, 1062
MaeIII GTNAC 3 cut(s) 140, 399, 808
MalI GATC 7 cut(s) 684, 719, 738, 825, 874, 1107, 1525
MbiI CCGCTC 1 cut(s) 1607
MboI GATC 7 cut(s) 682, 717, 736, 823, 872, 1105, 1523
MflI RGATCY 1 cut(s) 717
MhlI GDGCHC 1 cut(s) 43
MlsI TGGCCA 1 cut(s) 1313
MluCI AATT 9 cut(s) 224, 289, 660, 813, 923, 952, 1067, 1145, 1436
MluNI TGGCCA 1 cut(s) 1313
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 924
Mox20I TGGCCA 1 cut(s) 1313
MroNI GCCGGC 1 cut(s) 877
MscI TGGCCA 1 cut(s) 1313
MseI TTAA 6 cut(s) 261, 588, 633, 702, 1098, 1475
Msp20I TGGCCA 1 cut(s) 1313
MspA1I CMGCKG 1 cut(s) 1241
MspI CCGG 2 cut(s) 878, 1567
MspR9I CCNGG 6 cut(s) 173, 324, 750, 1027, 1587, 1611
Mva1269I GAATGC 2 cut(s) 334, 603
MvaI CCWGG 6 cut(s) 173, 324, 750, 1027, 1587, 1611
MwoI GCNNNNNNNGC 6 cut(s) 212, 600, 1078, 1247, 1361, 1493
NaeI GCCGGC 1 cut(s) 879
NcoI CCATGG 3 cut(s) 414, 1152, 1544
NdeI CATATG 1 cut(s) 1619
NdeII GATC 7 cut(s) 682, 717, 736, 823, 872, 1105, 1523
NgoMIV GCCGGC 1 cut(s) 877
NlaIV GGNNCC 2 cut(s) 40, 882
NmuCI GTSAC 1 cut(s) 399
NspI RCATGY 1 cut(s) 1254
PaeR7I CTCGAG 1 cut(s) 524
PagI TCATGA 1 cut(s) 886
PcsI WCGNNNNNNNCGW 1 cut(s) 1396
PctI GAATGC 2 cut(s) 334, 603
PdiI GCCGGC 1 cut(s) 879
PfeI GAWTC 5 cut(s) 500, 545, 844, 1457, 1576
PfoI TCCNGGA 1 cut(s) 1609
PkrI GCNGC 4 cut(s) 433, 618, 1366, 1606
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
Psp6I CCWGG 6 cut(s) 171, 322, 748, 1025, 1585, 1609
PspEI GGTNACC 1 cut(s) 140
PspFI CCCAGC 1 cut(s) 516
PspGI CCWGG 6 cut(s) 171, 322, 748, 1025, 1585, 1609
PspN4I GGNNCC 2 cut(s) 40, 882
PspPI GGNCC 3 cut(s) 256, 583, 757
PsuI RGATCY 1 cut(s) 717
PvuII CAGCTG 1 cut(s) 1241
SaqAI TTAA 6 cut(s) 261, 588, 633, 702, 1098, 1475
SatI GCNGC 4 cut(s) 432, 617, 1365, 1605
Sau3AI GATC 7 cut(s) 682, 717, 736, 823, 872, 1105, 1523
Sau96I GGNCC 3 cut(s) 256, 583, 757
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 6 cut(s) 173, 324, 750, 1027, 1587, 1611
SduI GDGCHC 1 cut(s) 43
SfaNI GCATC 3 cut(s) 1396, 1546, 1591
SfcI CTRYAG 1 cut(s) 1431
Sfr274I CTCGAG 1 cut(s) 524
SinI GGWCC 1 cut(s) 757
SlaI CTCGAG 1 cut(s) 524
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
Sse9I AATT 9 cut(s) 224, 289, 660, 813, 923, 952, 1067, 1145, 1436
SsiI CCGC 5 cut(s) 596, 619, 1021, 1190, 1605
SspMI CTAG 2 cut(s) 870, 1062
StyD4I CCNGG 6 cut(s) 171, 322, 748, 1025, 1585, 1609
StyI CCWWGG 5 cut(s) 145, 414, 1152, 1411, 1544
TaaI ACNGT 4 cut(s) 931, 942, 1103, 1299
TaqI TCGA 1 cut(s) 525
TasI AATT 9 cut(s) 224, 289, 660, 813, 923, 952, 1067, 1145, 1436
TauI GCSGC 1 cut(s) 1607
TfiI GAWTC 5 cut(s) 500, 545, 844, 1457, 1576
Tru1I TTAA 6 cut(s) 261, 588, 633, 702, 1098, 1475
Tru9I TTAA 6 cut(s) 261, 588, 633, 702, 1098, 1475
TscAI CASTG 2 cut(s) 369, 1455
TseFI GTSAC 1 cut(s) 399
TseI GCWGC 3 cut(s) 431, 616, 1364
Tsp45I GTSAC 1 cut(s) 399
TspDTI ATGAA 4 cut(s) 23, 965, 1157, 1365
TspRI CASTG 2 cut(s) 369, 1455
VpaK11BI GGWCC 1 cut(s) 757
XapI RAATTY 4 cut(s) 289, 923, 1145, 1436
XceI RCATGY 1 cut(s) 1254
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XhoI CTCGAG 1 cut(s) 524
XspI CTAG 2 cut(s) 870, 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.