Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007264

Physical Location & Seq

Genomic Coordinates Reverse (-)

881316 .. 883202

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00077300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGTCCCTTAACCAGAACCAAGCAGGTTCCATGGGGAATTCACCCTCATATTCCACACCCGGAAGTGGAAGTGTGAAGCGCTTCCCTCAAAAACCTCCAGTGCGCCCTCCTGGTCTTTCTCCTCCAAACATGATCTCACCGATTAGACCCATGGACCTCTCAGCTGCTAATCGTAAAAAGAAGCAGAAGCTTCCCGACAAACAGCTACAGGACAAAGTAGCCACCATACTGCCTGAATCTGCTCTATACACCCAGCTTCTTGAGTTTGAGGCTCGTGTTGATGCTGCGCTTACAAGAAAGAAAGTTCGCTCAATTCCACAGAAGCCAAGTGCTGAGCCCCCTACTTGGACGCTTAAGATAGTTGGAAGGATCTTGGAAGATGGGATTGATCCCGATCAGCCTGCAGTGGTCCAGAAATCAAATCCCTTTTACCCAAAGTTTTCATCTTTCTTCAAGAGAGTGACCATTTCTTTGGACCAGAGGCTATATCCTGATAATCATATCATTAACTGGGAACATACAAGGTCACCTGCACCACAGGAGGGATTTGAGGTAAAAAGAAAAGGGGACAAAGAATTTACTGTGAATATACGCTTGGAAATGAATTATGCGCCTGAGAAGTTTAAGCTTTCACAACCTCTGATGGAAGTTCTTGGTATTGAGGTGGAAACTCGTCCAAGGATAATAGCTTCAATCTGGCACTATGTGAAGGCTAGGAAATTGCAGAACCCAAATGACCCCTCTTTCTTTAACTGTGATCCACCTCTTCAAAAAGTATTCGGAGAGGAAAAGATGAAATTCACTATGGTGTCCCAGAAGATATCTCAGCATTTGTTTCCCCCACAACCTATACATTTGGAGCATAAGATGAGGCTTTCTGGGAATAGTCCAGCTGGAACAGCATGTTATGATGTGTTGGTAGATGTACCTTTTCCAATTCAAAGGGAATTATCAGCTCTATTGGCCAATTCGGAGAAAAACAAAGAAATTGACTCCTGTGATGAAGCGATATGTGGAGCTATCAGAAAAATCCACGAGCATCGTCGCAGGCGAGCTTTTTTCCTTGGATTTAGTCAATCACCTGTTGAATTCATCAATGCACTGATTGAATCTCAAAGCAAGGATTTAAAGCTTGTAGCTGGAGTAGCAAGCCGTAGTGCTGAGAAAGAGCGCCGGTCAGATTTCTTCCATCAACCATGGGTTGAAGATGCTGTTATCCGCTATTTGAATCGGAAGCCAGTTGCAGGAAGTGATCATCCTGGAAGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009909 GO:0009987 GO:0010224 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048580 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0099402 GO:1901360 GO:2000024 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SWIB

Protein Analysis

423

Amino Acids

47.91

Weight (kDa)

9.54

Isoelectric Point (pI)

63.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	206 - 278	3.4e-24	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01890 AT5G14170
fragaria_vesca	FvH4_6g53310 FvH4_6g53310 FvH4_6g53310
malus_domestica	MD09G1011600.v1.1 MD17G1012300.v1.1
prunus_persica	Prupe.3G305400_v2.0.a1 Prupe.3G305400_v2.0.a1 Prupe.3G305400_v2.0.a1
pyrus_communis	pycom111g00990 pycom17g00980
rosa_chinensis	RchiOBHm_Chr2g0175471
rosa_laevigata	RLG00000022330
rosa_multiflora	Rmu_sc0003302.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077300
rosa_rugosa	Rorug02G0584700 Rorug02G0584800 Rorug02G0584900 Rorug02G0585000
rosa_samantha	Rh2AG664500 Rh2BG675200 Rh2CG638400 Rh2DG689200
rosa_wichuraiana	Rw2G054460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	538
Acc36I	ACCTGC	2 cut(s)	14, 538
AciI	CCGC	1 cut(s)	1219
AclWI	GGATC	3 cut(s)	377, 383, 752
AcoI	YGGCCR	1 cut(s)	963
AcsI	RAATTY	4 cut(s)	37, 575, 797, 1088
AdeI	CACNNNGTG	1 cut(s)	706
AfaI	GTAC	1 cut(s)	927
AfeI	AGCGCT	1 cut(s)	80
AfiI	CCNNNNNNNGG	4 cut(s)	65, 345, 542, 1244
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	8 cut(s)	454, 693, 770, 941, 1088, 1109, 1205, 1228
AjnI	CCWGG	2 cut(s)	109, 1258
AjuI	GAANNNNNNNTTGG	2 cut(s)	578, 610
AleI	CACNNNNGTG	1 cut(s)	806
AlwI	GGATC	3 cut(s)	377, 383, 752
Aor51HI	AGCGCT	1 cut(s)	80
AoxI	GGCC	1 cut(s)	963
ApeKI	GCWGC	2 cut(s)	164, 284
ApoI	RAATTY	4 cut(s)	37, 575, 797, 1088
ArsI	GACNNNNNNTTYG	2 cut(s)	454, 486
Asp700I	GAANNNNTTC	1 cut(s)	80
AspLEI	GCGC	5 cut(s)	81, 105, 289, 613, 1173
AspS9I	GGNCC	3 cut(s)	154, 409, 475
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	4 cut(s)	33, 129, 519, 1071
AvaII	GGWCC	3 cut(s)	154, 409, 475
BalI	TGGCCA	1 cut(s)	965
BanII	GRGCYC	1 cut(s)	339
BauI	CACGAG	2 cut(s)	273, 1034
BbvI	GCAGC	2 cut(s)	151, 271
BccI	CCATC	3 cut(s)	374, 637, 1197
BceAI	ACGGC	1 cut(s)	1137
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciT130I	CCWGG	2 cut(s)	111, 1260
BclI	TGATCA	1 cut(s)	1252
BcnI	CCSGG	1 cut(s)	60
BfaI	CTAG	1 cut(s)	714
BfmI	CTRYAG	2 cut(s)	206, 402
BfoI	RGCGCY	2 cut(s)	82, 1174
BfrI	CTTAAG	1 cut(s)	353
BfuAI	ACCTGC	2 cut(s)	14, 538
BisI	GCNGC	2 cut(s)	165, 285
BlpI	GCTNAGC	1 cut(s)	333
BlsI	GCNGC	2 cut(s)	166, 286
Bme1390I	CCNGG	3 cut(s)	60, 111, 1260
Bme18I	GGWCC	3 cut(s)	154, 409, 475
BmgT120I	GGNCC	3 cut(s)	154, 409, 475
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	3 cut(s)	60, 111, 1260
BmrI	ACTGGG	1 cut(s)	520
BmsI	GCATC	3 cut(s)	271, 1048, 1198
BmuI	ACTGGG	1 cut(s)	520
BpmI	CTGGAG	2 cut(s)	81, 1161
Bpu1102I	GCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	60
BsaBI	GATNNNNATC	1 cut(s)	393
BsaJI	CCNNGG	5 cut(s)	30, 150, 677, 1063, 1196
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 345, 542, 1244
Bse118I	RCCGGY	1 cut(s)	1173
Bse1I	ACTGG	3 cut(s)	98, 515, 1238
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	2 cut(s)	111, 1260
BseDI	CCNNGG	5 cut(s)	30, 150, 677, 1063, 1196
BseGI	GGATG	1 cut(s)	1255
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	4 cut(s)	65, 345, 542, 1244
BseMII	CTCAG	5 cut(s)	174, 324, 606, 839, 1152
BseNI	ACTGG	3 cut(s)	98, 515, 1238
BseRI	GAGGAG	1 cut(s)	111
BseXI	GCAGC	2 cut(s)	151, 271
BseYI	CCCAGC	1 cut(s)	252
BsgI	GTGCAG	1 cut(s)	516
BshFI	GGCC	1 cut(s)	965
BsiSI	CCGG	2 cut(s)	60, 1174
BslFI	GGGAC	2 cut(s)	581, 796
BslI	CCNNNNNNNGG	4 cut(s)	65, 345, 542, 1244
BsmFI	GGGAC	2 cut(s)	581, 796
BsnI	GGCC	1 cut(s)	965
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	6 cut(s)	132, 369, 388, 394, 757, 1252
Bsp1720I	GCTNAGC	1 cut(s)	333
Bsp19I	CCATGG	3 cut(s)	30, 150, 1196
BspACI	CCGC	1 cut(s)	1219
BspANI	GGCC	1 cut(s)	965
BspCNI	CTCAG	5 cut(s)	173, 325, 607, 838, 1153
BspLI	GGNNCC	1 cut(s)	28
BspMAI	CTGCAG	1 cut(s)	406
BspMI	ACCTGC	2 cut(s)	14, 538
BspPI	GGATC	3 cut(s)	377, 383, 752
BspTI	CTTAAG	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	1173
BsrI	ACTGG	3 cut(s)	98, 515, 1238
BssAI	RCCGGY	1 cut(s)	1173
BssECI	CCNNGG	5 cut(s)	30, 150, 677, 1063, 1196
BssMI	GATC	6 cut(s)	132, 369, 388, 394, 757, 1252
BssSI	CACGAG	2 cut(s)	273, 1034
BssT1I	CCWWGG	5 cut(s)	30, 150, 677, 1063, 1196
Bst2BI	CACGAG	2 cut(s)	273, 1034
Bst2UI	CCWGG	2 cut(s)	111, 1260
Bst4CI	ACNGT	2 cut(s)	583, 755
Bst6I	CTCTTC	1 cut(s)	771
BstAFI	CTTAAG	1 cut(s)	353
BstC8I	GCNNGC	4 cut(s)	402, 1049, 1053, 1150
BstDEI	CTNAG	5 cut(s)	160, 333, 615, 825, 1161
BstDSI	CCRYGG	3 cut(s)	30, 150, 1196
BstEII	GGTNACC	1 cut(s)	525
BstF5I	GGATG	1 cut(s)	1255
BstH2I	RGCGCY	2 cut(s)	82, 1174
BstHHI	GCGC	5 cut(s)	81, 105, 289, 613, 1173
BstKTI	GATC	6 cut(s)	135, 372, 391, 397, 760, 1255
BstMBI	GATC	6 cut(s)	132, 369, 388, 394, 757, 1252
BstMWI	GCNNNNNNNGC	3 cut(s)	899, 962, 1145
BstNI	CCWGG	2 cut(s)	111, 1260
BstNSI	RCATGY	1 cut(s)	906
BstPI	GGTNACC	1 cut(s)	525
BstSCI	CCNGG	3 cut(s)	58, 109, 1258
BstSFI	CTRYAG	2 cut(s)	206, 402
BstV1I	GCAGC	2 cut(s)	151, 271
BstX2I	RGATCY	1 cut(s)	369
BstXI	CCANNNNNNTGG	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	965
BtgI	CCRYGG	3 cut(s)	30, 150, 1196
BtsCI	GGATG	1 cut(s)	1255
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	3 cut(s)	105, 411, 1100
BveI	ACCTGC	2 cut(s)	14, 538
Cac8I	GCNNGC	4 cut(s)	402, 1049, 1053, 1150
CfoI	GCGC	5 cut(s)	81, 105, 289, 613, 1173
Cfr10I	RCCGGY	1 cut(s)	1173
Cfr13I	GGNCC	3 cut(s)	154, 409, 475
CseI	GACGC	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	926
CviAII	CATG	6 cut(s)	31, 130, 151, 903, 1197, 1269
CviQI	GTAC	1 cut(s)	926
DdeI	CTNAG	5 cut(s)	160, 333, 615, 825, 1161
DpnI	GATC	6 cut(s)	134, 371, 390, 396, 759, 1254
DpnII	GATC	6 cut(s)	132, 369, 388, 394, 757, 1252
DraI	TTTAAA	1 cut(s)	1128
DraIII	CACNNNGTG	1 cut(s)	706
EaeI	YGGCCR	1 cut(s)	963
Eam1104I	CTCTTC	1 cut(s)	771
EarI	CTCTTC	1 cut(s)	771
Eco130I	CCWWGG	5 cut(s)	30, 150, 677, 1063, 1196
Eco24I	GRGCYC	1 cut(s)	339
Eco32I	GATATC	1 cut(s)	822
Eco47I	GGWCC	3 cut(s)	154, 409, 475
Eco47III	AGCGCT	1 cut(s)	80
Eco91I	GGTNACC	1 cut(s)	525
EcoO65I	GGTNACC	1 cut(s)	525
EcoRI	GAATTC	2 cut(s)	37, 1088
EcoRII	CCWGG	2 cut(s)	109, 1258
EcoRV	GATATC	1 cut(s)	822
EcoT14I	CCWWGG	5 cut(s)	30, 150, 677, 1063, 1196
EcoT38I	GRGCYC	1 cut(s)	339
ErhI	CCWWGG	5 cut(s)	30, 150, 677, 1063, 1196
FaeI	CATG	6 cut(s)	34, 133, 154, 906, 1200, 1272
FaqI	GGGAC	2 cut(s)	581, 796
FatI	CATG	6 cut(s)	30, 129, 150, 902, 1196, 1268
FbaI	TGATCA	1 cut(s)	1252
Fnu4HI	GCNGC	2 cut(s)	165, 285
FokI	GGATG	1 cut(s)	1242
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	2 cut(s)	165, 285
FspBI	CTAG	1 cut(s)	714
GlaI	GCGC	5 cut(s)	80, 104, 288, 612, 1172
GluI	GCNGC	2 cut(s)	165, 285
GsaI	CCCAGC	1 cut(s)	256
GsuI	CTGGAG	2 cut(s)	81, 1161
HaeII	RGCGCY	2 cut(s)	82, 1174
HaeIII	GGCC	1 cut(s)	965
HapII	CCGG	2 cut(s)	60, 1174
HgaI	GACGC	1 cut(s)	358
HhaI	GCGC	5 cut(s)	81, 105, 289, 613, 1173
Hin1II	CATG	6 cut(s)	34, 133, 154, 906, 1200, 1272
Hin6I	GCGC	5 cut(s)	79, 103, 287, 611, 1171
HinP1I	GCGC	5 cut(s)	79, 103, 287, 611, 1171
HindIII	AAGCTT	3 cut(s)	188, 626, 1130
HinfI	GANTC	4 cut(s)	236, 992, 1109, 1228
HpaII	CCGG	2 cut(s)	60, 1174
HphI	GGTGA	4 cut(s)	33, 129, 519, 1071
Hpy188I	TCNGA	6 cut(s)	642, 782, 973, 1025, 1180, 1233
Hpy188III	TCNNGA	6 cut(s)	194, 260, 392, 412, 454, 491
Hpy99I	CGWCG	1 cut(s)	1047
HpyAV	CCTTC	2 cut(s)	360, 703
HpyCH4III	ACNGT	2 cut(s)	583, 755
HpyCH4V	TGCA	5 cut(s)	404, 533, 724, 1100, 1244
HpyF10VI	GCNNNNNNNGC	3 cut(s)	899, 962, 1145
HpyF3I	CTNAG	5 cut(s)	160, 333, 615, 825, 1161
Hsp92II	CATG	6 cut(s)	34, 133, 154, 906, 1200, 1272
HspAI	GCGC	5 cut(s)	79, 103, 287, 611, 1171
Ksp22I	TGATCA	1 cut(s)	1252
Kzo9I	GATC	6 cut(s)	132, 369, 388, 394, 757, 1252
LmnI	GCTCC	2 cut(s)	859, 1016
Lsp1109I	GCAGC	2 cut(s)	151, 271
LweI	GCATC	3 cut(s)	271, 1048, 1198
MaeI	CTAG	1 cut(s)	714
MaeIII	GTNAC	2 cut(s)	460, 525
MalI	GATC	6 cut(s)	134, 371, 390, 396, 759, 1254
MboI	GATC	6 cut(s)	132, 369, 388, 394, 757, 1252
MboII	GAAGA	6 cut(s)	389, 442, 758, 829, 1177, 1217
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	339
MlsI	TGGCCA	1 cut(s)	965
MluNI	TGGCCA	1 cut(s)	965
MlyI	GAGTC	1 cut(s)	986
MmeI	TCCRAC	1 cut(s)	343
Mox20I	TGGCCA	1 cut(s)	965
MroXI	GAANNNNTTC	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	965
MseI	TTAA	6 cut(s)	9, 354, 507, 624, 750, 1127
MslI	CAYNNNNRTG	1 cut(s)	806
Msp20I	TGGCCA	1 cut(s)	965
MspA1I	CMGCKG	2 cut(s)	164, 893
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	2 cut(s)	60, 1174
MspR9I	CCNGG	3 cut(s)	60, 111, 1260
MvaI	CCWGG	2 cut(s)	111, 1260
MwoI	GCNNNNNNNGC	3 cut(s)	899, 962, 1145
NciI	CCSGG	1 cut(s)	60
NcoI	CCATGG	3 cut(s)	30, 150, 1196
NdeII	GATC	6 cut(s)	132, 369, 388, 394, 757, 1252
NlaIII	CATG	6 cut(s)	34, 133, 154, 906, 1200, 1272
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	2 cut(s)	460, 525
NspI	RCATGY	1 cut(s)	906
OliI	CACNNNNGTG	1 cut(s)	806
PaqCI	CACCTGC	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	1 cut(s)	1048
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	3 cut(s)	236, 1109, 1228
PfoI	TCCNGGA	1 cut(s)	1258
PkrI	GCNGC	2 cut(s)	166, 286
PleI	GAGTC	1 cut(s)	986
PpsI	GAGTC	1 cut(s)	986
Psp6I	CCWGG	2 cut(s)	109, 1258
PspEI	GGTNACC	1 cut(s)	525
PspFI	CCCAGC	1 cut(s)	252
PspGI	CCWGG	2 cut(s)	109, 1258
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	3 cut(s)	154, 409, 475
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	369
PvuII	CAGCTG	2 cut(s)	164, 893
RsaI	GTAC	1 cut(s)	927
RsaNI	GTAC	1 cut(s)	926
RseI	CAYNNNNRTG	1 cut(s)	806
SaqAI	TTAA	6 cut(s)	9, 354, 507, 624, 750, 1127
SatI	GCNGC	2 cut(s)	165, 285
Sau3AI	GATC	6 cut(s)	132, 369, 388, 394, 757, 1252
Sau96I	GGNCC	3 cut(s)	154, 409, 475
SchI	GAGTC	1 cut(s)	986
ScrFI	CCNGG	3 cut(s)	60, 111, 1260
SduI	GDGCHC	1 cut(s)	339
SfaNI	GCATC	3 cut(s)	271, 1048, 1198
SfcI	CTRYAG	2 cut(s)	206, 402
SinI	GGWCC	3 cut(s)	154, 409, 475
SmiMI	CAYNNNNRTG	1 cut(s)	806
SmlI	CTYRAG	2 cut(s)	260, 353
SmoI	CTYRAG	2 cut(s)	260, 353
SsiI	CCGC	1 cut(s)	1219
SspMI	CTAG	1 cut(s)	714
StyD4I	CCNGG	3 cut(s)	58, 109, 1258
StyI	CCWWGG	5 cut(s)	30, 150, 677, 1063, 1196
TaaI	ACNGT	2 cut(s)	583, 755
TfiI	GAWTC	3 cut(s)	236, 1109, 1228
Tru1I	TTAA	6 cut(s)	9, 354, 507, 624, 750, 1127
Tru9I	TTAA	6 cut(s)	9, 354, 507, 624, 750, 1127
TscAI	CASTG	3 cut(s)	105, 411, 1107
TseFI	GTSAC	2 cut(s)	460, 525
TseI	GCWGC	2 cut(s)	164, 284
Tsp45I	GTSAC	2 cut(s)	460, 525
TspDTI	ATGAA	5 cut(s)	432, 617, 809, 1017, 1081
TspRI	CASTG	3 cut(s)	105, 411, 1107
Vha464I	CTTAAG	1 cut(s)	353
VpaK11BI	GGWCC	3 cut(s)	154, 409, 475
XapI	RAATTY	4 cut(s)	37, 575, 797, 1088
XceI	RCATGY	1 cut(s)	906
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.