Rh2BG675200

SWI SNF complex component SNF12 homolog

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
88669911 .. 88672109
2199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG675200.1

Sequence Viewer

Length: 1665 bp
ATGTCAATGAACAATAATAACCCACCTAAGAATCTTGGAGCCTCTTCGTCGCCCTTTAGAAATTCCGGGATGGTGGCCCCATCTATGTCTGCAAACCCTTCGTTTCCGCAATCACAGGCTCAAGCACAACTTGGGGCTGGTTTTCAAGCACAATTTCAGCTCTCCCAAGCCCAGGCGATTGCGCAAGCTCAGTCAAAAGCTCAAGCACATGCACATGCGCAAGCACAGGCTCAAGCTCAAGCACATCACGCCCAGGCTCAGGCTCAAGCTGCTCACGCCCAATTCCAGGCTCAGTTACAGGCTCAGGCGATGTCCCTTAACCAGAACCAAGCAGGTTCCATGGGGAATTCACCCTCATATTCCACACCCGGAAGTGGAAGTGTGAAGCGCTTCCCTCAAAAACCTCCAGTGCGCCCTCCTGGTCTTTCTCCTCCAAACATGATCTCACCGATTAGAACCATGGACCTCTCAGCTGCTAATCGTAAAAAGAAGCAGAAGCTTCCCGACAAACAGCTACAGGACAAAGTAGCCACCATATTGCCTGAATCTGCTCTATACACCCAGCTTCTTGAGTTTGAGGCTCGTGTTGATGCTGCGCTTACAAGAAAGAAAGTTGACATCCAAGAGGCTCTGAAAAGCCCCCCTTCCATTCAGAAAACACTTCGCATTTATGTTTTTAACACTTTTGCCAATCAGGTTCGCTCAATTCCACAGAAGCCAAATGCTGAGCCCCCAACTTGGACGCTTAAGATAGTTGGAAGGATCTTGGAAGATGGGATTGACCCCGATCAGCCTGGAGTGGTCCAGAAATCAAATCCCTTTTACCCAAAGTTTTCATCTTTCTTCAAGAGAGTGACCATTTCTTTGGACCAGAGGCTGTATCCTGATAATCATATCATTAACTGGGAACATGCAAGGTCACCTGCACCACAGGAGGGATTTGAGGTAAAGAGAAAAGGGGACAAAGAATTTCCTGTGAATATACGCTTGGAAATGAATTATGCGCCTGAGAAGTTTAAGCTTTCACAACCTCTGATGGAAGTTCTTGGTATTGAGGTGGAAACTCGTCCAAGGATAATAGCTTCAATCTGGCACTATGTGAAGGCTAGGAAATTGCAGAACCCAAATGACCCCTCTTTCTTTAACTGTGATCCACCTCTTCAAAAAGTATTCGGAGAGGAAAAGATGAAATTCACTATGGTGTCCCAGAAGATATCTCAGCATTTGTTTCCCCCACAACCTATACATTTGGAGCATAAGATGAGGCTTTCTGGGAATAGTCCAGCTGGAACAGCATGTTATGATGTGTTGGTAGATGTACCTTTTCCAATTCAAAGGGAATTATCTGCTCTATTGGCCAATTCGGAGAAAAACAAAGAAATTGACGCCTGTGATGAAGCGATATGTGGAGCTATCAGAAAAATCCATGAGCATCGTCGCAGGCGAGCTTTTTTCCTTGGATTTAGTCAATCACCTGTTGAATTCATCAATGCACTGATTGAATCTCAAAGCAAGGATTTAAAGCTTGTAGCTGGAGTAGCAAGCCGTAGTGCTGAGAAAGAGCGCCGGTCAGATTTCTTCCATCAACCATGGGTTGAAGATGCAGTTATCCGCTATTTGAATCGGAAGCCTGTTGCAGGAAGTGATCATCCTGGAAGCACATGA

Protein Analysis

554

Amino Acids

61.73

Weight (kDa)

9.65

Isoelectric Point (pI)

59.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 337 - 409 5.1e-24 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 931
Acc16I TGCGCA 2 cut(s) 183, 219
Acc36I ACCTGC 2 cut(s) 323, 931
AciI CCGC 2 cut(s) 107, 1612
AclWI GGATC 2 cut(s) 770, 1145
AcoI YGGCCR 1 cut(s) 1356
AcsI RAATTY 5 cut(s) 61, 346, 968, 1190, 1481
AcyI GRCGYC 1 cut(s) 1386
AdeI CACNNNGTG 1 cut(s) 1099
AfaI GTAC 1 cut(s) 1320
AfeI AGCGCT 1 cut(s) 389
AfiI CCNNNNNNNGG 7 cut(s) 172, 259, 286, 374, 738, 935, 1637
AflII CTTAAG 1 cut(s) 746
AgsI TTSAA 9 cut(s) 146, 847, 1086, 1163, 1334, 1481, 1502, 1598, 1621
AjnI CCWGG 6 cut(s) 171, 252, 285, 418, 793, 1651
AjuI GAANNNNNNNTTGG 2 cut(s) 971, 1003
AleI CACNNNNGTG 1 cut(s) 1199
AlwI GGATC 2 cut(s) 770, 1145
AlwNI CAGNNNCTG 1 cut(s) 877
Aor51HI AGCGCT 1 cut(s) 389
AoxI GGCC 2 cut(s) 75, 1356
ApeKI GCWGC 3 cut(s) 269, 473, 593
ApoI RAATTY 5 cut(s) 61, 346, 968, 1190, 1481
ArsI GACNNNNNNTTYG 2 cut(s) 847, 879
Asp700I GAANNNNTTC 1 cut(s) 389
AspLEI GCGC 7 cut(s) 184, 220, 390, 414, 598, 1006, 1566
AspS9I GGNCC 4 cut(s) 76, 463, 802, 868
AsuC2I CCSGG 2 cut(s) 67, 369
AsuHPI GGTGA 4 cut(s) 342, 438, 912, 1464
AvaII GGWCC 3 cut(s) 463, 802, 868
BalI TGGCCA 1 cut(s) 1358
BanII GRGCYC 1 cut(s) 732
BauI CACGAG 1 cut(s) 582
BbvI GCAGC 3 cut(s) 256, 460, 580
BccI CCATC 5 cut(s) 64, 88, 767, 1030, 1590
BceAI ACGGC 1 cut(s) 1530
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BciT130I CCWGG 6 cut(s) 173, 254, 287, 420, 795, 1653
BciVI GTATCC 1 cut(s) 891
BclI TGATCA 1 cut(s) 1645
BcnI CCSGG 2 cut(s) 67, 369
BfaI CTAG 1 cut(s) 1107
BfmI CTRYAG 1 cut(s) 515
BfoI RGCGCY 2 cut(s) 391, 1567
BfrI CTTAAG 1 cut(s) 746
BfuAI ACCTGC 2 cut(s) 323, 931
BfuI GTATCC 1 cut(s) 891
BisI GCNGC 3 cut(s) 270, 474, 594
BlpI GCTNAGC 1 cut(s) 726
BlsI GCNGC 3 cut(s) 271, 475, 595
Bme1390I CCNGG 8 cut(s) 67, 173, 254, 287, 369, 420, 795, 1653
Bme18I GGWCC 3 cut(s) 463, 802, 868
BmgT120I GGNCC 4 cut(s) 76, 463, 802, 868
BmiI GGNNCC 3 cut(s) 40, 78, 337
BmrFI CCNGG 8 cut(s) 67, 173, 254, 287, 369, 420, 795, 1653
BmrI ACTGGG 1 cut(s) 913
BmsI GCATC 3 cut(s) 580, 1441, 1591
BmuI ACTGGG 1 cut(s) 913
BpmI CTGGAG 3 cut(s) 390, 816, 1554
Bpu10I CCTNAGC 2 cut(s) 258, 303
Bpu1102I GCTNAGC 1 cut(s) 726
BpuEI CTTGAG 6 cut(s) 105, 186, 216, 222, 249, 590
BpuMI CCSGG 2 cut(s) 67, 369
BsaHI GRCGYC 1 cut(s) 1386
BsaJI CCNNGG 7 cut(s) 171, 252, 339, 459, 1070, 1456, 1589
Bsc4I CCNNNNNNNGG 7 cut(s) 172, 259, 286, 374, 738, 935, 1637
Bse118I RCCGGY 1 cut(s) 1566
Bse1I ACTGG 2 cut(s) 407, 908
BseBI CCWGG 6 cut(s) 173, 254, 287, 420, 795, 1653
BseDI CCNNGG 7 cut(s) 171, 252, 339, 459, 1070, 1456, 1589
BseGI GGATG 3 cut(s) 75, 618, 1648
BseLI CCNNNNNNNGG 7 cut(s) 172, 259, 286, 374, 738, 935, 1637
BseMII CTCAG 9 cut(s) 203, 272, 305, 317, 483, 717, 999, 1232, 1545
BseNI ACTGG 2 cut(s) 407, 908
BseRI GAGGAG 1 cut(s) 420
BseXI GCAGC 3 cut(s) 256, 460, 580
BseYI CCCAGC 1 cut(s) 561
BsgI GTGCAG 1 cut(s) 909
BshFI GGCC 2 cut(s) 77, 1358
BsiSI CCGG 3 cut(s) 66, 369, 1567
BslFI GGGAC 3 cut(s) 298, 974, 1189
BslI CCNNNNNNNGG 7 cut(s) 172, 259, 286, 374, 738, 935, 1637
BsmFI GGGAC 3 cut(s) 298, 974, 1189
BsnI GGCC 2 cut(s) 77, 1358
Bsp1286I GDGCHC 1 cut(s) 732
Bsp143I GATC 5 cut(s) 441, 762, 787, 1150, 1645
Bsp1720I GCTNAGC 1 cut(s) 726
Bsp19I CCATGG 3 cut(s) 339, 459, 1589
BspACI CCGC 2 cut(s) 107, 1612
BspANI GGCC 2 cut(s) 77, 1358
BspCNI CTCAG 9 cut(s) 202, 271, 304, 316, 482, 718, 1000, 1231, 1546
BspLI GGNNCC 3 cut(s) 40, 78, 337
BspMI ACCTGC 2 cut(s) 323, 931
BspPI GGATC 2 cut(s) 770, 1145
BspTI CTTAAG 1 cut(s) 746
BsrFI RCCGGY 1 cut(s) 1566
BsrI ACTGG 2 cut(s) 407, 908
BssAI RCCGGY 1 cut(s) 1566
BssECI CCNNGG 7 cut(s) 171, 252, 339, 459, 1070, 1456, 1589
BssMI GATC 5 cut(s) 441, 762, 787, 1150, 1645
BssNI GRCGYC 1 cut(s) 1386
BssSI CACGAG 1 cut(s) 582
BssT1I CCWWGG 5 cut(s) 339, 459, 1070, 1456, 1589
Bst2BI CACGAG 1 cut(s) 582
Bst2UI CCWGG 6 cut(s) 173, 254, 287, 420, 795, 1653
Bst4CI ACNGT 1 cut(s) 1148
Bst6I CTCTTC 2 cut(s) 49, 1164
BstACI GRCGYC 1 cut(s) 1386
BstAFI CTTAAG 1 cut(s) 746
BstC8I GCNNGC 5 cut(s) 186, 222, 1442, 1446, 1543
BstDSI CCRYGG 3 cut(s) 339, 459, 1589
BstEII GGTNACC 1 cut(s) 918
BstENI CCTNNNNNAGG 1 cut(s) 1635
BstF5I GGATG 3 cut(s) 75, 618, 1648
BstH2I RGCGCY 2 cut(s) 391, 1567
BstHHI GCGC 7 cut(s) 184, 220, 390, 414, 598, 1006, 1566
BstKTI GATC 5 cut(s) 444, 765, 790, 1153, 1648
BstMBI GATC 5 cut(s) 441, 762, 787, 1150, 1645
BstMWI GCNNNNNNNGC 6 cut(s) 248, 269, 275, 1292, 1355, 1538
BstNI CCWGG 6 cut(s) 173, 254, 287, 420, 795, 1653
BstNSI RCATGY 4 cut(s) 212, 218, 914, 1299
BstPI GGTNACC 1 cut(s) 918
BstSCI CCNGG 8 cut(s) 65, 171, 252, 285, 367, 418, 793, 1651
BstSFI CTRYAG 1 cut(s) 515
BstV1I GCAGC 3 cut(s) 256, 460, 580
BstX2I RGATCY 1 cut(s) 762
BstXI CCANNNNNNTGG 1 cut(s) 865
BstYI RGATCY 1 cut(s) 762
BsuI GTATCC 1 cut(s) 891
BsuRI GGCC 2 cut(s) 77, 1358
BtgI CCRYGG 3 cut(s) 339, 459, 1589
BtgZI GCGATG 1 cut(s) 323
BtsCI GGATG 3 cut(s) 75, 618, 1648
BtsIMutI CAGTG 2 cut(s) 414, 1493
BveI ACCTGC 2 cut(s) 323, 931
Cac8I GCNNGC 5 cut(s) 186, 222, 1442, 1446, 1543
CaiI CAGNNNCTG 1 cut(s) 877
CfoI GCGC 7 cut(s) 184, 220, 390, 414, 598, 1006, 1566
Cfr10I RCCGGY 1 cut(s) 1566
Cfr13I GGNCC 4 cut(s) 76, 463, 802, 868
CseI GACGC 2 cut(s) 751, 1394
Csp6I GTAC 1 cut(s) 1319
CviQI GTAC 1 cut(s) 1319
DpnI GATC 5 cut(s) 443, 764, 789, 1152, 1647
DpnII GATC 5 cut(s) 441, 762, 787, 1150, 1645
DraI TTTAAA 1 cut(s) 1521
DraIII CACNNNGTG 1 cut(s) 1099
EaeI YGGCCR 1 cut(s) 1356
Eam1104I CTCTTC 2 cut(s) 49, 1164
EarI CTCTTC 2 cut(s) 49, 1164
Eco130I CCWWGG 5 cut(s) 339, 459, 1070, 1456, 1589
Eco24I GRGCYC 1 cut(s) 732
Eco32I GATATC 1 cut(s) 1215
Eco47I GGWCC 3 cut(s) 463, 802, 868
Eco47III AGCGCT 1 cut(s) 389
Eco91I GGTNACC 1 cut(s) 918
EcoNI CCTNNNNNAGG 1 cut(s) 1635
EcoO65I GGTNACC 1 cut(s) 918
EcoRI GAATTC 2 cut(s) 346, 1481
EcoRII CCWGG 6 cut(s) 171, 252, 285, 418, 793, 1651
EcoRV GATATC 1 cut(s) 1215
EcoT14I CCWWGG 5 cut(s) 339, 459, 1070, 1456, 1589
EcoT38I GRGCYC 1 cut(s) 732
ErhI CCWWGG 5 cut(s) 339, 459, 1070, 1456, 1589
FalI AAGNNNNNCTT 4 cut(s) 114, 146, 628, 660
FaqI GGGAC 3 cut(s) 298, 974, 1189
FbaI TGATCA 1 cut(s) 1645
Fnu4HI GCNGC 3 cut(s) 270, 474, 594
FokI GGATG 3 cut(s) 82, 605, 1635
FriOI GRGCYC 1 cut(s) 732
Fsp4HI GCNGC 3 cut(s) 270, 474, 594
FspBI CTAG 1 cut(s) 1107
FspI TGCGCA 2 cut(s) 183, 219
GlaI GCGC 7 cut(s) 183, 219, 389, 413, 597, 1005, 1565
GluI GCNGC 3 cut(s) 270, 474, 594
GsaI CCCAGC 1 cut(s) 565
GsuI CTGGAG 3 cut(s) 390, 816, 1554
HaeII RGCGCY 2 cut(s) 391, 1567
HaeIII GGCC 2 cut(s) 77, 1358
HapII CCGG 3 cut(s) 66, 369, 1567
HgaI GACGC 2 cut(s) 751, 1394
HhaI GCGC 7 cut(s) 184, 220, 390, 414, 598, 1006, 1566
Hin1I GRCGYC 1 cut(s) 1386
Hin6I GCGC 7 cut(s) 182, 218, 388, 412, 596, 1004, 1564
HinP1I GCGC 7 cut(s) 182, 218, 388, 412, 596, 1004, 1564
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 3 cut(s) 497, 1019, 1523
HinfI GANTC 4 cut(s) 31, 545, 1502, 1621
HpaII CCGG 3 cut(s) 66, 369, 1567
HphI GGTGA 4 cut(s) 342, 438, 912, 1464
Hpy166II GTNNAC 1 cut(s) 616
Hpy188I TCNGA 8 cut(s) 633, 654, 1035, 1175, 1366, 1418, 1573, 1626
Hpy188III TCNNGA 5 cut(s) 503, 569, 805, 847, 884
Hpy8I GTNNAC 1 cut(s) 616
Hpy99I CGWCG 2 cut(s) 52, 1440
HpyAV CCTTC 4 cut(s) 108, 654, 753, 1096
HpyCH4III ACNGT 1 cut(s) 1148
HpyCH4V TGCA 8 cut(s) 92, 212, 914, 926, 1117, 1493, 1604, 1637
HpyF10VI GCNNNNNNNGC 6 cut(s) 248, 269, 275, 1292, 1355, 1538
Hsp92I GRCGYC 1 cut(s) 1386
HspAI GCGC 7 cut(s) 182, 218, 388, 412, 596, 1004, 1564
Ksp22I TGATCA 1 cut(s) 1645
Kzo9I GATC 5 cut(s) 441, 762, 787, 1150, 1645
LmnI GCTCC 3 cut(s) 38, 1252, 1409
Lsp1109I GCAGC 3 cut(s) 256, 460, 580
LweI GCATC 3 cut(s) 580, 1441, 1591
MaeI CTAG 1 cut(s) 1107
MaeIII GTNAC 3 cut(s) 294, 853, 918
MalI GATC 5 cut(s) 443, 764, 789, 1152, 1647
MboI GATC 5 cut(s) 441, 762, 787, 1150, 1645
MboII GAAGA 7 cut(s) 36, 782, 835, 1151, 1222, 1570, 1610
MflI RGATCY 1 cut(s) 762
MhlI GDGCHC 1 cut(s) 732
MlsI TGGCCA 1 cut(s) 1358
MluNI TGGCCA 1 cut(s) 1358
MmeI TCCRAC 1 cut(s) 736
Mox20I TGGCCA 1 cut(s) 1358
MroXI GAANNNNTTC 1 cut(s) 389
MscI TGGCCA 1 cut(s) 1358
MseI TTAA 7 cut(s) 318, 678, 747, 900, 1017, 1143, 1520
MslI CAYNNNNRTG 2 cut(s) 213, 1199
Msp20I TGGCCA 1 cut(s) 1358
MspA1I CMGCKG 2 cut(s) 473, 1286
MspCI CTTAAG 1 cut(s) 746
MspI CCGG 3 cut(s) 66, 369, 1567
MspR9I CCNGG 8 cut(s) 67, 173, 254, 287, 369, 420, 795, 1653
MvaI CCWGG 6 cut(s) 173, 254, 287, 420, 795, 1653
MwoI GCNNNNNNNGC 6 cut(s) 248, 269, 275, 1292, 1355, 1538
NciI CCSGG 2 cut(s) 67, 369
NcoI CCATGG 3 cut(s) 339, 459, 1589
NdeII GATC 5 cut(s) 441, 762, 787, 1150, 1645
NlaIV GGNNCC 3 cut(s) 40, 78, 337
NmuCI GTSAC 2 cut(s) 853, 918
NsbI TGCGCA 2 cut(s) 183, 219
NspI RCATGY 4 cut(s) 212, 218, 914, 1299
OliI CACNNNNGTG 1 cut(s) 1199
PaqCI CACCTGC 1 cut(s) 931
PcsI WCGNNNNNNNCGW 1 cut(s) 1441
PdmI GAANNNNTTC 1 cut(s) 389
PfeI GAWTC 4 cut(s) 31, 545, 1502, 1621
PfoI TCCNGGA 2 cut(s) 65, 1651
PkrI GCNGC 3 cut(s) 271, 475, 595
Psp6I CCWGG 6 cut(s) 171, 252, 285, 418, 793, 1651
PspEI GGTNACC 1 cut(s) 918
PspFI CCCAGC 1 cut(s) 561
PspGI CCWGG 6 cut(s) 171, 252, 285, 418, 793, 1651
PspN4I GGNNCC 3 cut(s) 40, 78, 337
PspPI GGNCC 4 cut(s) 76, 463, 802, 868
PstNI CAGNNNCTG 1 cut(s) 877
PsuI RGATCY 1 cut(s) 762
PvuII CAGCTG 2 cut(s) 473, 1286
RsaI GTAC 1 cut(s) 1320
RsaNI GTAC 1 cut(s) 1319
RseI CAYNNNNRTG 2 cut(s) 213, 1199
SaqAI TTAA 7 cut(s) 318, 678, 747, 900, 1017, 1143, 1520
SatI GCNGC 3 cut(s) 270, 474, 594
Sau3AI GATC 5 cut(s) 441, 762, 787, 1150, 1645
Sau96I GGNCC 4 cut(s) 76, 463, 802, 868
ScrFI CCNGG 8 cut(s) 67, 173, 254, 287, 369, 420, 795, 1653
SduI GDGCHC 1 cut(s) 732
SfaNI GCATC 3 cut(s) 580, 1441, 1591
SfcI CTRYAG 1 cut(s) 515
SinI GGWCC 3 cut(s) 463, 802, 868
SmiMI CAYNNNNRTG 2 cut(s) 213, 1199
SmlI CTYRAG 7 cut(s) 120, 201, 231, 237, 264, 569, 746
SmoI CTYRAG 7 cut(s) 120, 201, 231, 237, 264, 569, 746
SsiI CCGC 2 cut(s) 107, 1612
SspMI CTAG 1 cut(s) 1107
StyD4I CCNGG 8 cut(s) 65, 171, 252, 285, 367, 418, 793, 1651
StyI CCWWGG 5 cut(s) 339, 459, 1070, 1456, 1589
TaaI ACNGT 1 cut(s) 1148
TfiI GAWTC 4 cut(s) 31, 545, 1502, 1621
Tru1I TTAA 7 cut(s) 318, 678, 747, 900, 1017, 1143, 1520
Tru9I TTAA 7 cut(s) 318, 678, 747, 900, 1017, 1143, 1520
TscAI CASTG 2 cut(s) 414, 1500
TseFI GTSAC 2 cut(s) 853, 918
TseI GCWGC 3 cut(s) 269, 473, 593
Tsp45I GTSAC 2 cut(s) 853, 918
TspDTI ATGAA 6 cut(s) 23, 825, 1010, 1202, 1410, 1474
TspRI CASTG 2 cut(s) 414, 1500
Vha464I CTTAAG 1 cut(s) 746
VpaK11BI GGWCC 3 cut(s) 463, 802, 868
XagI CCTNNNNNAGG 1 cut(s) 1635
XapI RAATTY 5 cut(s) 61, 346, 968, 1190, 1481
XceI RCATGY 4 cut(s) 212, 218, 914, 1299
XmnI GAANNNNTTC 1 cut(s) 389
XspI CTAG 1 cut(s) 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.