Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007264

Physical Location & Seq

Genomic Coordinates Forward (+)

70766014 .. 70768043

Gene Structure 2030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0584700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGCCGTACTACTCGCACGACGACGAAGTCCACGACTTCGACGAGTATGATCCGACCCCCTACGGCGGCGGATACGACCTGTTTCTCACCTACGGCCGCCCCCTCGAGCCTTCGGAGGAGACCTGCTACCCCAGCTCCTCCGATCAGGACGACTACGAACGCCCCGATCTCTCCTCCTACAGCGAGCCCTCCGCCTACGCCGACGAGGCCCTCAATAACGAGTACAGCAGCTACCAGCGTAGCAAGCCCCGACCCGGATTTGGTGGACGACCCGATCATGAGGAGGCTGCGGAAGGTGGAGGAGAGTATGGATCCAGGCCCAGTAGGCCTCAGTATGGATCCGAGGAGCCCGGATCGGGGTATGGATCCGGTTACGGGCGGAAACCCGAGTCCGATGAGCCCAGTTCCGAGTACGGGTCGGGTTACGGGCGGAAGCCGGAGTACAAAGCGCCTGAATCGGAGTATGGATCGGGTTACGGACGCAAACCCGAGTACGAGGTGCAGGAATCGGAGTATGGCAGGAAACCCGAGTACGAAGCGCCGGTCGGGTCGGGTTATGGCCGGAAGCCAAGTTATGGTGAGGATGAGAGTGGTGGATACGGCGATGAGCCGCCGAGGCGGAAGCCGAGCTATGGAGAGGAGAAACCCGAGTTTGAGGGTTCGGGTTATGGGGATGAACCGCCGAGGAGACCTGGGTTTGGAAGGCCTGGTGGTTATGGTGGGGAGGAGAGTGAAGAGAGGCCCAGTTATGGGAGGACTGAGTTTCAGGAGCCTGGTTATGGTGATGAGCCGCCGAGGAAGCCCAGCTATGGTGGTAGGACTAGTTATGAGACCCCGGAAACTGACGAGTATGGGAAGCCCAGCTATGGCAGGCCAAGCTATGAGACCCCGGAGACTGAGGAGTATGGGAAGCCCAGCTATGGCAGGCCAAGCTATGAGACCCCGGAAACTGAGGAGTATGGGAAGCCCAGCTATGGCAGGCCAAGCTATGAGACCCCGGAGACTGAGGAGTATGGGAAGCCCAGTTATGGGCGGTCTGAGGAGCAGGAGTACCGCAAGCCGAAGCCTAGCTATGGGAGGGGTAGTGATGATGAGGATTCTGAGCGTCGTCAGAGGCGTGGTAGTGATGATGAGGATTCTCAGCCTCGTCGGGGATATGGTGAAGAGGGCTATGGCCGCAAGAAATATGGAAATGATGACTCAGATGATGATGAGGAGAAAAAGCAGCGTCGCCACCACCACCATCGCAAGAGCTACGATGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009909 GO:0009987 GO:0010224 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048580 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0099402 GO:1901360 GO:2000024 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SWIB

Protein Analysis

422

Amino Acids

47.88

Weight (kDa)

4.63

Isoelectric Point (pI)

61.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01890 AT5G14170
fragaria_vesca	FvH4_6g53310 FvH4_6g53310 FvH4_6g53310
malus_domestica	MD09G1011600.v1.1 MD17G1012300.v1.1
prunus_persica	Prupe.3G305400_v2.0.a1 Prupe.3G305400_v2.0.a1 Prupe.3G305400_v2.0.a1
pyrus_communis	pycom111g00990 pycom17g00980
rosa_chinensis	RchiOBHm_Chr2g0175471
rosa_laevigata	RLG00000022330
rosa_multiflora	Rmu_sc0003302.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077300
rosa_rugosa	Rorug02G0584700 Rorug02G0584800 Rorug02G0584900 Rorug02G0585000
rosa_samantha	Rh2AG664500 Rh2BG675200 Rh2CG638400 Rh2DG689200
rosa_wichuraiana	Rw2G054460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	26
Acc36I	ACCTGC	1 cut(s)	131
AccB7I	CCANNNNNTGG	1 cut(s)	575
AclWI	GGATC	9 cut(s)	44, 306, 319, 333, 346, 360, 361, 373, 475
AcoI	YGGCCR	3 cut(s)	94, 559, 1174
AfaI	GTAC	7 cut(s)	8, 224, 413, 443, 494, 533, 1052
AhlI	ACTAGT	1 cut(s)	821
AjnI	CCWGG	4 cut(s)	314, 691, 706, 772
Alw26I	GTCTC	8 cut(s)	113, 682, 824, 878, 887, 932, 986, 995
AlwI	GGATC	9 cut(s)	44, 306, 319, 333, 346, 360, 361, 373, 475
Ama87I	CYCGRG	5 cut(s)	104, 386, 488, 527, 647
ApeKI	GCWGC	3 cut(s)	228, 287, 1225
ArsI	GACNNNNNNTTYG	2 cut(s)	528, 560
AspLEI	GCGC	2 cut(s)	451, 541
AspS9I	GGNCC	3 cut(s)	208, 318, 741
AsuC2I	CCSGG	6 cut(s)	255, 351, 836, 890, 944, 998
AsuHPI	GGTGA	4 cut(s)	79, 590, 794, 1172
AvaI	CYCGRG	5 cut(s)	104, 386, 488, 527, 647
BamHI	GGATCC	3 cut(s)	311, 338, 365
BanII	GRGCYC	3 cut(s)	189, 351, 402
BarI	GAAGNNNNNNTAC	2 cut(s)	425, 457
BbvI	GCAGC	3 cut(s)	240, 274, 1237
BccI	CCATC	1 cut(s)	1251
BceAI	ACGGC	3 cut(s)	79, 109, 616
BciT130I	CCWGG	4 cut(s)	316, 693, 708, 774
BciVI	GTATCC	2 cut(s)	65, 590
BcnI	CCSGG	6 cut(s)	255, 351, 836, 890, 944, 998
BcoDI	GTCTC	8 cut(s)	113, 682, 824, 878, 887, 932, 986, 995
BcuI	ACTAGT	1 cut(s)	821
BfaI	CTAG	2 cut(s)	822, 1068
BfmI	CTRYAG	1 cut(s)	178
BfoI	RGCGCY	2 cut(s)	452, 542
BfuAI	ACCTGC	1 cut(s)	131
BfuI	GTATCC	2 cut(s)	65, 590
BglI	GCCNNNNNGGC	3 cut(s)	206, 325, 616
BisI	GCNGC	8 cut(s)	67, 97, 229, 288, 611, 791, 1177, 1226
BlsI	GCNGC	8 cut(s)	68, 98, 230, 289, 612, 792, 1178, 1227
BmeT110I	CYCGRG	5 cut(s)	104, 386, 488, 527, 647
BmgT120I	GGNCC	3 cut(s)	208, 318, 741
BmiI	GGNNCC	5 cut(s)	313, 340, 348, 367, 771
BmrI	ACTGGG	4 cut(s)	315, 396, 738, 1017
BmuI	ACTGGG	4 cut(s)	315, 396, 738, 1017
BpuMI	CCSGG	6 cut(s)	255, 351, 836, 890, 944, 998
BsaI	GGTCTC	6 cut(s)	113, 682, 824, 878, 932, 986
BsaJI	CCNNGG	9 cut(s)	342, 614, 683, 692, 794, 834, 888, 942, 996
BsaWI	WCCGGW	1 cut(s)	368
BsaXI	ACNNNNNCTCC	6 cut(s)	119, 149, 1034, 1064, 1069, 1099
Bse118I	RCCGGY	1 cut(s)	541
Bse1I	ACTGG	4 cut(s)	321, 402, 744, 1023
BseBI	CCWGG	4 cut(s)	316, 693, 708, 774
BseDI	CCNNGG	9 cut(s)	342, 614, 683, 692, 794, 834, 888, 942, 996
BseGI	GGATG	2 cut(s)	589, 679
BseMII	CTCAG	9 cut(s)	344, 750, 888, 942, 996, 1029, 1092, 1154, 1215
BseNI	ACTGG	4 cut(s)	321, 402, 744, 1023
BseX3I	CGGCCG	1 cut(s)	94
BseXI	GCAGC	3 cut(s)	240, 274, 1237
BseYI	CCCAGC	5 cut(s)	131, 803, 860, 914, 968
BsgI	GTGCAG	1 cut(s)	521
Bsh1285I	CGRYCG	2 cut(s)	97, 546
BsiEI	CGRYCG	2 cut(s)	97, 546
BsiHKCI	CYCGRG	5 cut(s)	104, 386, 488, 527, 647
BsmAI	GTCTC	8 cut(s)	113, 682, 824, 878, 887, 932, 986, 995
Bso31I	GGTCTC	6 cut(s)	113, 682, 824, 878, 932, 986
BsoBI	CYCGRG	5 cut(s)	104, 386, 488, 527, 647
Bsp1286I	GDGCHC	3 cut(s)	189, 351, 402
Bsp143I	GATC	9 cut(s)	49, 142, 166, 274, 311, 338, 353, 365, 467
BspCNI	CTCAG	9 cut(s)	343, 751, 889, 943, 997, 1030, 1093, 1153, 1214
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	5 cut(s)	313, 340, 348, 367, 771
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	9 cut(s)	44, 306, 319, 333, 346, 360, 361, 373, 475
BspTNI	GGTCTC	6 cut(s)	113, 682, 824, 878, 932, 986
BsrFI	RCCGGY	1 cut(s)	541
BsrI	ACTGG	4 cut(s)	321, 402, 744, 1023
BssAI	RCCGGY	1 cut(s)	541
BssECI	CCNNGG	9 cut(s)	342, 614, 683, 692, 794, 834, 888, 942, 996
BssMI	GATC	9 cut(s)	49, 142, 166, 274, 311, 338, 353, 365, 467
Bst2UI	CCWGG	4 cut(s)	316, 693, 708, 774
Bst6I	CTCTTC	2 cut(s)	729, 1158
BstC8I	GCNNGC	6 cut(s)	185, 245, 872, 926, 980, 1058
BstDEI	CTNAG	9 cut(s)	330, 759, 897, 951, 1005, 1038, 1101, 1140, 1201
BstF5I	GGATG	2 cut(s)	589, 679
BstH2I	RGCGCY	2 cut(s)	452, 542
BstHHI	GCGC	2 cut(s)	451, 541
BstKTI	GATC	9 cut(s)	52, 145, 169, 277, 314, 341, 356, 368, 470
BstMAI	GTCTC	8 cut(s)	113, 682, 824, 878, 887, 932, 986, 995
BstMBI	GATC	9 cut(s)	49, 142, 166, 274, 311, 338, 353, 365, 467
BstMCI	CGRYCG	2 cut(s)	97, 546
BstNI	CCWGG	4 cut(s)	316, 693, 708, 774
BstSFI	CTRYAG	1 cut(s)	178
BstV1I	GCAGC	3 cut(s)	240, 274, 1237
BstX2I	RGATCY	3 cut(s)	311, 338, 365
BstYI	RGATCY	3 cut(s)	311, 338, 365
BstZI	CGGCCG	1 cut(s)	94
BsuI	GTATCC	2 cut(s)	65, 590
BtgZI	GCGATG	2 cut(s)	618, 1229
BtsCI	GGATG	2 cut(s)	589, 679
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	6 cut(s)	185, 245, 872, 926, 980, 1058
CciI	TCATGA	1 cut(s)	277
CfoI	GCGC	2 cut(s)	451, 541
Cfr10I	RCCGGY	1 cut(s)	541
Cfr13I	GGNCC	3 cut(s)	208, 318, 741
CseI	GACGC	3 cut(s)	489, 1094, 1217
Csp6I	GTAC	7 cut(s)	7, 223, 412, 442, 493, 532, 1051
CviAII	CATG	1 cut(s)	278
CviQI	GTAC	7 cut(s)	7, 223, 412, 442, 493, 532, 1051
DdeI	CTNAG	9 cut(s)	330, 759, 897, 951, 1005, 1038, 1101, 1140, 1201
DpnI	GATC	9 cut(s)	51, 144, 168, 276, 313, 340, 355, 367, 469
DpnII	GATC	9 cut(s)	49, 142, 166, 274, 311, 338, 353, 365, 467
DrdI	GACNNNNNNGTC	1 cut(s)	26
DseDI	GACNNNNNNGTC	1 cut(s)	26
EaeI	YGGCCR	3 cut(s)	94, 559, 1174
EagI	CGGCCG	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	729, 1158
EarI	CTCTTC	2 cut(s)	729, 1158
EciI	GGCGGA	5 cut(s)	84, 181, 394, 445, 634
EclXI	CGGCCG	1 cut(s)	94
Eco147I	AGGCCT	2 cut(s)	328, 706
Eco24I	GRGCYC	3 cut(s)	189, 351, 402
Eco31I	GGTCTC	6 cut(s)	113, 682, 824, 878, 932, 986
Eco52I	CGGCCG	1 cut(s)	94
Eco88I	CYCGRG	5 cut(s)	104, 386, 488, 527, 647
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRII	CCWGG	4 cut(s)	314, 691, 706, 772
EcoT38I	GRGCYC	3 cut(s)	189, 351, 402
FaeI	CATG	1 cut(s)	281
FatI	CATG	1 cut(s)	277
Fnu4HI	GCNGC	8 cut(s)	67, 97, 229, 288, 611, 791, 1177, 1226
FokI	GGATG	2 cut(s)	596, 686
FriOI	GRGCYC	3 cut(s)	189, 351, 402
Fsp4HI	GCNGC	8 cut(s)	67, 97, 229, 288, 611, 791, 1177, 1226
FspBI	CTAG	2 cut(s)	822, 1068
GlaI	GCGC	2 cut(s)	450, 540
GluI	GCNGC	8 cut(s)	67, 97, 229, 288, 611, 791, 1177, 1226
GsaI	CCCAGC	5 cut(s)	135, 807, 864, 918, 972
HaeII	RGCGCY	2 cut(s)	452, 542
HgaI	GACGC	3 cut(s)	489, 1094, 1217
HhaI	GCGC	2 cut(s)	451, 541
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	2 cut(s)	449, 539
HinP1I	GCGC	2 cut(s)	449, 539
HinfI	GANTC	6 cut(s)	389, 455, 506, 1097, 1136, 1199
HphI	GGTGA	4 cut(s)	79, 590, 794, 1172
Hpy166II	GTNNAC	2 cut(s)	31, 266
Hpy188III	TCNNGA	3 cut(s)	146, 278, 767
Hpy8I	GTNNAC	2 cut(s)	31, 266
Hpy99I	CGWCG	7 cut(s)	23, 26, 44, 206, 1110, 1152, 1233
HpyAV	CCTTC	3 cut(s)	120, 287, 696
HpyCH4V	TGCA	1 cut(s)	502
HpyF3I	CTNAG	9 cut(s)	330, 759, 897, 951, 1005, 1038, 1101, 1140, 1201
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	2 cut(s)	449, 539
Kzo9I	GATC	9 cut(s)	49, 142, 166, 274, 311, 338, 353, 365, 467
LmnI	GCTCC	4 cut(s)	140, 346, 769, 1042
Lsp1109I	GCAGC	3 cut(s)	240, 274, 1237
MaeI	CTAG	2 cut(s)	822, 1068
MaeIII	GTNAC	3 cut(s)	371, 422, 473
MalI	GATC	9 cut(s)	51, 144, 168, 276, 313, 340, 355, 367, 469
MboI	GATC	9 cut(s)	49, 142, 166, 274, 311, 338, 353, 365, 467
MboII	GAAGA	2 cut(s)	746, 1175
MflI	RGATCY	3 cut(s)	311, 338, 365
MhlI	GDGCHC	3 cut(s)	189, 351, 402
MlyI	GAGTC	2 cut(s)	398, 1193
MmeI	TCCRAC	1 cut(s)	77
MvaI	CCWGG	4 cut(s)	316, 693, 708, 774
NciI	CCSGG	6 cut(s)	255, 351, 836, 890, 944, 998
NdeII	GATC	9 cut(s)	49, 142, 166, 274, 311, 338, 353, 365, 467
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	5 cut(s)	313, 340, 348, 367, 771
NmeAIII	GCCGAG	4 cut(s)	639, 651, 708, 819
PaeR7I	CTCGAG	1 cut(s)	104
PagI	TCATGA	1 cut(s)	277
PceI	AGGCCT	2 cut(s)	328, 706
PcsI	WCGNNNNNNNCGW	4 cut(s)	30, 39, 162, 1114
PfeI	GAWTC	4 cut(s)	455, 506, 1097, 1136
PflFI	GACNNNGTC	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	575
PkrI	GCNGC	8 cut(s)	68, 98, 230, 289, 612, 792, 1178, 1227
PleI	GAGTC	2 cut(s)	397, 1193
PpsI	GAGTC	2 cut(s)	397, 1193
Psp6I	CCWGG	4 cut(s)	314, 691, 706, 772
PspFI	CCCAGC	5 cut(s)	131, 803, 860, 914, 968
PspGI	CCWGG	4 cut(s)	314, 691, 706, 772
PspN4I	GGNNCC	5 cut(s)	313, 340, 348, 367, 771
PspPI	GGNCC	3 cut(s)	208, 318, 741
PspXI	VCTCGAGB	1 cut(s)	104
PsuI	RGATCY	3 cut(s)	311, 338, 365
PsyI	GACNNNGTC	1 cut(s)	26
RsaI	GTAC	7 cut(s)	8, 224, 413, 443, 494, 533, 1052
RsaNI	GTAC	7 cut(s)	7, 223, 412, 442, 493, 532, 1051
SatI	GCNGC	8 cut(s)	67, 97, 229, 288, 611, 791, 1177, 1226
Sau3AI	GATC	9 cut(s)	49, 142, 166, 274, 311, 338, 353, 365, 467
Sau96I	GGNCC	3 cut(s)	208, 318, 741
SchI	GAGTC	2 cut(s)	398, 1193
SduI	GDGCHC	3 cut(s)	189, 351, 402
SfcI	CTRYAG	1 cut(s)	178
SfiI	GGCCNNNNNGGCC	1 cut(s)	325
Sfr274I	CTCGAG	1 cut(s)	104
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SpeI	ACTAGT	1 cut(s)	821
SseBI	AGGCCT	2 cut(s)	328, 706
SspMI	CTAG	2 cut(s)	822, 1068
StuI	AGGCCT	2 cut(s)	328, 706
TaqI	TCGA	2 cut(s)	39, 105
TatI	WGTACW	2 cut(s)	222, 441
TauI	GCSGC	5 cut(s)	69, 99, 613, 793, 1179
TfiI	GAWTC	4 cut(s)	455, 506, 1097, 1136
TseI	GCWGC	3 cut(s)	228, 287, 1225
TspDTI	ATGAA	1 cut(s)	690
TspGWI	ACGGA	1 cut(s)	492
Tth111I	GACNNNGTC	1 cut(s)	26
Van91I	CCANNNNNTGG	1 cut(s)	575
XhoI	CTCGAG	1 cut(s)	104
XspI	CTAG	2 cut(s)	822, 1068

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.