RLG00000022330

SWI SNF complex component SNF12 homolog

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
82630098 .. 82633390
3293 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022330

Sequence Viewer

Length: 1668 bp
ATGTCGATGAACAATAATAACCCACCTAAGAATCTTGGAGCATCTTCGTCTCCCTTTAGAAATTCCGGGATGGTGGCCCCATCTATGTCTGCAAACCCTTCGTTTCCGCAATCGCAGGCTCAAGCACAACTTGGGGCTGGTTTTCAAGCACAATTTCAGCTCTCCCAAGCCCAGGCGATTGCGCAAGCTCAGTCGAAAGCTCAAGCACATGCACATGCGCAAGCACAGGCTCAAGCTCAAGCACATCATGCCCAGGCTCAGGCTCAGGCTCAAGCGGCTCATGCCCAATTCCAGGCTCAGTTACAGGCTCAGATGTCCCTTAACCAGAACCAAGCAGGTTCCATGGGGAATTCACCCTCATATTCCACACCCGGAAGTGGAAGTGTGAAGCGCTTCCCTCAAAAACCTCCAGTGCGCCCTCCTGGTCTTTCTCCTCCAAACATGATCTCACCGATTAGAACCATGGACCTCTCAGCTGCTAATCGTAAAAAGAAGCAGAAGCTTCCCGACAAACAGCTACAGGACAAAGTAGCCACCATATTGCCTGAATCTGCTCTATACACCCAGCTTCTTGAGTTTGAGGCTCGTGTTGATGCTGCGCTTACAAGAAAGAAAGTTGACATCCAAGAGGCTCTGAAAAGCCCCCCTTCCATTCAGAAAACACTTCGCATTTATGTTTTTAACACTTTTGCCAATCAGGTTCGCTCAATTCCACAGAAGCCAAATGCGGAGCCCCCTACTTGGACGCTTAAGATAGTTGGAAGGATCTTGGAAGATGGGATTGACCCCGATCAGCCTGGAGTGGTCCAGAAATCAAATCCCTTTTACCCAAAGTTTTCATCTTTCTTCAAGAGAGTGACCATTTCTTTGGACCAGAGGCTATATCCTGATAATCATATCATTAACTGGGAACATGCAAGGTCACCTGCACCACAGGAGGGATTTGAAGTAAAGAGAAAAGGGGACAAAGAATTTACTGTGAATATACGCTTGGAAATGAATTATGCGCCTGAGAAGTTTAAGCTTTCACAACCTCTGATGGAAGTTCTTGGTATTGAGGTGGAAACTCGTCCAAGGATAATAGCTTCAATCTGGCACTATGTGAAGGCTAGGAAATTGCAGAACCCAAATGACCCCTCTTTCTTTAACTGTGATCCACCTCTTCAAAAAGTATTCGGAGAGGAAAAGATGAAATTCACTATGGTGTCCCAGAAGATATCTCAGCATTTGTTTCCCCCACAACCTATACATTTGGAGCATAAGATGAGGCTTTCTGGGAATAGTCCAGCTGGAACAGCATGTTATGATGTGTTGGTGGATGTACCTTTTCCAATTCAAAGGGAATTATCTGCTCTATTGGCCAATTCGGAGAAAAACAAAGAAATTGACGCCTGTGATGAAGCAATATGTGGAGCTATCAGAAAAATCCACGAGCATCGTCGCAGGCGAGCTTTTTTCCTTGGATTTAGTCAATCACCTGTTGAATTCATCAATGCATTGATTGAATCTCAAAGCAAGGATTTAAAGCTTGTAGCTGGAGTAGCAAGCCGTAGTGCTGAGAAAGAGCGCCGGTCAGATTTCTTCCATCAACCATGGGTTGAAGATGCTGTTATCCGCTATTTGAATCGGAAGCCAGTTGCAGGAAGTGATCATCCTGGAAGCACATGA

Protein Analysis

556

Amino Acids

61.87

Weight (kDa)

9.65

Isoelectric Point (pI)

58.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 338 - 410 5.1e-24 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 934
Acc16I TGCGCA 2 cut(s) 183, 219
Acc36I ACCTGC 2 cut(s) 326, 934
AciI CCGC 4 cut(s) 107, 275, 728, 1615
AclWI GGATC 2 cut(s) 773, 1148
AcoI YGGCCR 1 cut(s) 1359
AcsI RAATTY 5 cut(s) 61, 349, 971, 1193, 1484
AcyI GRCGYC 1 cut(s) 1389
AdeI CACNNNGTG 1 cut(s) 1102
AfaI GTAC 1 cut(s) 1323
AfeI AGCGCT 1 cut(s) 392
AfiI CCNNNNNNNGG 7 cut(s) 172, 259, 292, 377, 741, 938, 1640
AflII CTTAAG 1 cut(s) 749
AjnI CCWGG 6 cut(s) 171, 252, 291, 421, 796, 1654
AjuI GAANNNNNNNTTGG 2 cut(s) 974, 1006
AleI CACNNNNGTG 1 cut(s) 1202
Alw26I GTCTC 1 cut(s) 54
AlwI GGATC 2 cut(s) 773, 1148
Aor51HI AGCGCT 1 cut(s) 392
AoxI GGCC 2 cut(s) 75, 1359
ApeKI GCWGC 2 cut(s) 476, 596
ApoI RAATTY 5 cut(s) 61, 349, 971, 1193, 1484
ArsI GACNNNNNNTTYG 2 cut(s) 850, 882
Asp700I GAANNNNTTC 1 cut(s) 392
AspLEI GCGC 7 cut(s) 184, 220, 393, 417, 601, 1009, 1569
AspS9I GGNCC 4 cut(s) 76, 466, 805, 871
AsuC2I CCSGG 2 cut(s) 67, 372
AsuHPI GGTGA 4 cut(s) 345, 441, 915, 1467
AvaII GGWCC 3 cut(s) 466, 805, 871
BalI TGGCCA 1 cut(s) 1361
BanII GRGCYC 1 cut(s) 735
BauI CACGAG 2 cut(s) 585, 1430
BbvI GCAGC 2 cut(s) 463, 583
BccI CCATC 5 cut(s) 64, 88, 770, 1033, 1593
BceAI ACGGC 1 cut(s) 1533
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BciT130I CCWGG 6 cut(s) 173, 254, 293, 423, 798, 1656
BclI TGATCA 1 cut(s) 1648
BcnI CCSGG 2 cut(s) 67, 372
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 1 cut(s) 1110
BfmI CTRYAG 1 cut(s) 518
BfoI RGCGCY 2 cut(s) 394, 1570
BfrI CTTAAG 1 cut(s) 749
BfuAI ACCTGC 2 cut(s) 326, 934
BisI GCNGC 3 cut(s) 276, 477, 597
BlsI GCNGC 3 cut(s) 277, 478, 598
Bme1390I CCNGG 8 cut(s) 67, 173, 254, 293, 372, 423, 798, 1656
Bme18I GGWCC 3 cut(s) 466, 805, 871
BmgT120I GGNCC 4 cut(s) 76, 466, 805, 871
BmiI GGNNCC 3 cut(s) 78, 340, 732
BmrFI CCNGG 8 cut(s) 67, 173, 254, 293, 372, 423, 798, 1656
BmrI ACTGGG 1 cut(s) 916
BmsI GCATC 4 cut(s) 50, 583, 1444, 1594
BmuI ACTGGG 1 cut(s) 916
BpmI CTGGAG 3 cut(s) 393, 819, 1557
Bpu10I CCTNAGC 2 cut(s) 258, 264
BpuEI CTTGAG 6 cut(s) 105, 186, 216, 222, 255, 593
BpuMI CCSGG 2 cut(s) 67, 372
BsaHI GRCGYC 1 cut(s) 1389
BsaJI CCNNGG 7 cut(s) 171, 252, 342, 462, 1073, 1459, 1592
Bsc4I CCNNNNNNNGG 7 cut(s) 172, 259, 292, 377, 741, 938, 1640
Bse118I RCCGGY 1 cut(s) 1569
Bse1I ACTGG 3 cut(s) 410, 911, 1634
BseBI CCWGG 6 cut(s) 173, 254, 293, 423, 798, 1656
BseDI CCNNGG 7 cut(s) 171, 252, 342, 462, 1073, 1459, 1592
BseGI GGATG 4 cut(s) 75, 621, 1324, 1651
BseLI CCNNNNNNNGG 7 cut(s) 172, 259, 292, 377, 741, 938, 1640
BseMII CTCAG 9 cut(s) 203, 272, 278, 311, 323, 486, 1002, 1235, 1548
BseNI ACTGG 3 cut(s) 410, 911, 1634
BseRI GAGGAG 1 cut(s) 423
BseXI GCAGC 2 cut(s) 463, 583
BseYI CCCAGC 1 cut(s) 564
BsgI GTGCAG 1 cut(s) 912
BshFI GGCC 2 cut(s) 77, 1361
BsiSI CCGG 3 cut(s) 66, 372, 1570
BslFI GGGAC 3 cut(s) 301, 977, 1192
BslI CCNNNNNNNGG 7 cut(s) 172, 259, 292, 377, 741, 938, 1640
BsmAI GTCTC 1 cut(s) 54
BsmBI CGTCTC 1 cut(s) 54
BsmFI GGGAC 3 cut(s) 301, 977, 1192
BsnI GGCC 2 cut(s) 77, 1361
Bsp1286I GDGCHC 1 cut(s) 735
Bsp143I GATC 5 cut(s) 444, 765, 790, 1153, 1648
Bsp19I CCATGG 3 cut(s) 342, 462, 1592
BspACI CCGC 4 cut(s) 107, 275, 728, 1615
BspANI GGCC 2 cut(s) 77, 1361
BspCNI CTCAG 9 cut(s) 202, 271, 277, 310, 322, 485, 1003, 1234, 1549
BspLI GGNNCC 3 cut(s) 78, 340, 732
BspMI ACCTGC 2 cut(s) 326, 934
BspPI GGATC 2 cut(s) 773, 1148
BspTI CTTAAG 1 cut(s) 749
BsrFI RCCGGY 1 cut(s) 1569
BsrI ACTGG 3 cut(s) 410, 911, 1634
BssAI RCCGGY 1 cut(s) 1569
BssECI CCNNGG 7 cut(s) 171, 252, 342, 462, 1073, 1459, 1592
BssMI GATC 5 cut(s) 444, 765, 790, 1153, 1648
BssNI GRCGYC 1 cut(s) 1389
BssSI CACGAG 2 cut(s) 585, 1430
BssT1I CCWWGG 5 cut(s) 342, 462, 1073, 1459, 1592
Bst2BI CACGAG 2 cut(s) 585, 1430
Bst2UI CCWGG 6 cut(s) 173, 254, 293, 423, 798, 1656
Bst4CI ACNGT 2 cut(s) 979, 1151
Bst6I CTCTTC 1 cut(s) 1167
BstACI GRCGYC 1 cut(s) 1389
BstAFI CTTAAG 1 cut(s) 749
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 6 cut(s) 117, 186, 222, 1445, 1449, 1546
BstDSI CCRYGG 3 cut(s) 342, 462, 1592
BstEII GGTNACC 1 cut(s) 921
BstF5I GGATG 4 cut(s) 75, 621, 1324, 1651
BstH2I RGCGCY 2 cut(s) 394, 1570
BstHHI GCGC 7 cut(s) 184, 220, 393, 417, 601, 1009, 1569
BstKTI GATC 5 cut(s) 447, 768, 793, 1156, 1651
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 5 cut(s) 444, 765, 790, 1153, 1648
BstMWI GCNNNNNNNGC 6 cut(s) 248, 275, 281, 1295, 1358, 1541
BstNI CCWGG 6 cut(s) 173, 254, 293, 423, 798, 1656
BstNSI RCATGY 4 cut(s) 212, 218, 917, 1302
BstPI GGTNACC 1 cut(s) 921
BstSCI CCNGG 8 cut(s) 65, 171, 252, 291, 370, 421, 796, 1654
BstSFI CTRYAG 1 cut(s) 518
BstV1I GCAGC 2 cut(s) 463, 583
BstX2I RGATCY 1 cut(s) 765
BstXI CCANNNNNNTGG 1 cut(s) 868
BstYI RGATCY 1 cut(s) 765
BsuRI GGCC 2 cut(s) 77, 1361
BtgI CCRYGG 3 cut(s) 342, 462, 1592
BtsCI GGATG 4 cut(s) 75, 621, 1324, 1651
BtsIMutI CAGTG 1 cut(s) 417
BveI ACCTGC 2 cut(s) 326, 934
Cac8I GCNNGC 6 cut(s) 117, 186, 222, 1445, 1449, 1546
CfoI GCGC 7 cut(s) 184, 220, 393, 417, 601, 1009, 1569
Cfr10I RCCGGY 1 cut(s) 1569
Cfr13I GGNCC 4 cut(s) 76, 466, 805, 871
CseI GACGC 2 cut(s) 754, 1397
Csp6I GTAC 1 cut(s) 1322
CviQI GTAC 1 cut(s) 1322
DpnI GATC 5 cut(s) 446, 767, 792, 1155, 1650
DpnII GATC 5 cut(s) 444, 765, 790, 1153, 1648
DraI TTTAAA 1 cut(s) 1524
DraIII CACNNNGTG 1 cut(s) 1102
EaeI YGGCCR 1 cut(s) 1359
Eam1104I CTCTTC 1 cut(s) 1167
EarI CTCTTC 1 cut(s) 1167
Eco130I CCWWGG 5 cut(s) 342, 462, 1073, 1459, 1592
Eco24I GRGCYC 1 cut(s) 735
Eco32I GATATC 1 cut(s) 1218
Eco47I GGWCC 3 cut(s) 466, 805, 871
Eco47III AGCGCT 1 cut(s) 392
Eco91I GGTNACC 1 cut(s) 921
EcoO65I GGTNACC 1 cut(s) 921
EcoRI GAATTC 2 cut(s) 349, 1484
EcoRII CCWGG 6 cut(s) 171, 252, 291, 421, 796, 1654
EcoRV GATATC 1 cut(s) 1218
EcoT14I CCWWGG 5 cut(s) 342, 462, 1073, 1459, 1592
EcoT22I ATGCAT 1 cut(s) 1498
EcoT38I GRGCYC 1 cut(s) 735
ErhI CCWWGG 5 cut(s) 342, 462, 1073, 1459, 1592
Esp3I CGTCTC 1 cut(s) 54
FalI AAGNNNNNCTT 4 cut(s) 114, 146, 631, 663
FaqI GGGAC 3 cut(s) 301, 977, 1192
FbaI TGATCA 1 cut(s) 1648
Fnu4HI GCNGC 3 cut(s) 276, 477, 597
FokI GGATG 4 cut(s) 82, 608, 1331, 1638
FriOI GRGCYC 1 cut(s) 735
Fsp4HI GCNGC 3 cut(s) 276, 477, 597
FspBI CTAG 1 cut(s) 1110
FspI TGCGCA 2 cut(s) 183, 219
GlaI GCGC 7 cut(s) 183, 219, 392, 416, 600, 1008, 1568
GluI GCNGC 3 cut(s) 276, 477, 597
GsaI CCCAGC 1 cut(s) 568
GsuI CTGGAG 3 cut(s) 393, 819, 1557
HaeII RGCGCY 2 cut(s) 394, 1570
HaeIII GGCC 2 cut(s) 77, 1361
HapII CCGG 3 cut(s) 66, 372, 1570
HgaI GACGC 2 cut(s) 754, 1397
HhaI GCGC 7 cut(s) 184, 220, 393, 417, 601, 1009, 1569
Hin1I GRCGYC 1 cut(s) 1389
Hin6I GCGC 7 cut(s) 182, 218, 391, 415, 599, 1007, 1567
HinP1I GCGC 7 cut(s) 182, 218, 391, 415, 599, 1007, 1567
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HindIII AAGCTT 3 cut(s) 500, 1022, 1526
HinfI GANTC 4 cut(s) 31, 548, 1505, 1624
HpaII CCGG 3 cut(s) 66, 372, 1570
HphI GGTGA 4 cut(s) 345, 441, 915, 1467
Hpy166II GTNNAC 1 cut(s) 619
Hpy188I TCNGA 9 cut(s) 312, 636, 657, 1038, 1178, 1369, 1421, 1576, 1629
Hpy188III TCNNGA 5 cut(s) 506, 572, 808, 850, 887
Hpy8I GTNNAC 1 cut(s) 619
Hpy99I CGWCG 1 cut(s) 1443
HpyAV CCTTC 4 cut(s) 108, 657, 756, 1099
HpyCH4III ACNGT 2 cut(s) 979, 1151
HpyCH4V TGCA 7 cut(s) 92, 212, 917, 929, 1120, 1496, 1640
HpyF10VI GCNNNNNNNGC 6 cut(s) 248, 275, 281, 1295, 1358, 1541
Hsp92I GRCGYC 1 cut(s) 1389
HspAI GCGC 7 cut(s) 182, 218, 391, 415, 599, 1007, 1567
Ksp22I TGATCA 1 cut(s) 1648
Kzo9I GATC 5 cut(s) 444, 765, 790, 1153, 1648
LmnI GCTCC 4 cut(s) 38, 730, 1255, 1412
Lsp1109I GCAGC 2 cut(s) 463, 583
LweI GCATC 4 cut(s) 50, 583, 1444, 1594
MaeI CTAG 1 cut(s) 1110
MaeIII GTNAC 3 cut(s) 300, 856, 921
MalI GATC 5 cut(s) 446, 767, 792, 1155, 1650
MboI GATC 5 cut(s) 444, 765, 790, 1153, 1648
MboII GAAGA 7 cut(s) 36, 785, 838, 1154, 1225, 1573, 1613
MflI RGATCY 1 cut(s) 765
MhlI GDGCHC 1 cut(s) 735
MlsI TGGCCA 1 cut(s) 1361
MluNI TGGCCA 1 cut(s) 1361
MmeI TCCRAC 1 cut(s) 739
Mox20I TGGCCA 1 cut(s) 1361
Mph1103I ATGCAT 1 cut(s) 1498
MroXI GAANNNNTTC 1 cut(s) 392
MscI TGGCCA 1 cut(s) 1361
MseI TTAA 7 cut(s) 321, 681, 750, 903, 1020, 1146, 1523
MslI CAYNNNNRTG 2 cut(s) 213, 1202
Msp20I TGGCCA 1 cut(s) 1361
MspA1I CMGCKG 2 cut(s) 476, 1289
MspCI CTTAAG 1 cut(s) 749
MspI CCGG 3 cut(s) 66, 372, 1570
MspR9I CCNGG 8 cut(s) 67, 173, 254, 293, 372, 423, 798, 1656
MvaI CCWGG 6 cut(s) 173, 254, 293, 423, 798, 1656
MwoI GCNNNNNNNGC 6 cut(s) 248, 275, 281, 1295, 1358, 1541
NciI CCSGG 2 cut(s) 67, 372
NcoI CCATGG 3 cut(s) 342, 462, 1592
NdeII GATC 5 cut(s) 444, 765, 790, 1153, 1648
NlaIV GGNNCC 3 cut(s) 78, 340, 732
NmuCI GTSAC 2 cut(s) 856, 921
NsbI TGCGCA 2 cut(s) 183, 219
NsiI ATGCAT 1 cut(s) 1498
NspI RCATGY 4 cut(s) 212, 218, 917, 1302
OliI CACNNNNGTG 1 cut(s) 1202
PaqCI CACCTGC 1 cut(s) 934
PcsI WCGNNNNNNNCGW 1 cut(s) 1444
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 4 cut(s) 31, 548, 1505, 1624
PfoI TCCNGGA 2 cut(s) 65, 1654
PkrI GCNGC 3 cut(s) 277, 478, 598
Psp6I CCWGG 6 cut(s) 171, 252, 291, 421, 796, 1654
PspEI GGTNACC 1 cut(s) 921
PspFI CCCAGC 1 cut(s) 564
PspGI CCWGG 6 cut(s) 171, 252, 291, 421, 796, 1654
PspN4I GGNNCC 3 cut(s) 78, 340, 732
PspPI GGNCC 4 cut(s) 76, 466, 805, 871
PsuI RGATCY 1 cut(s) 765
PvuII CAGCTG 2 cut(s) 476, 1289
RsaI GTAC 1 cut(s) 1323
RsaNI GTAC 1 cut(s) 1322
RseI CAYNNNNRTG 2 cut(s) 213, 1202
SaqAI TTAA 7 cut(s) 321, 681, 750, 903, 1020, 1146, 1523
SatI GCNGC 3 cut(s) 276, 477, 597
Sau3AI GATC 5 cut(s) 444, 765, 790, 1153, 1648
Sau96I GGNCC 4 cut(s) 76, 466, 805, 871
ScrFI CCNGG 8 cut(s) 67, 173, 254, 293, 372, 423, 798, 1656
SduI GDGCHC 1 cut(s) 735
SfaNI GCATC 4 cut(s) 50, 583, 1444, 1594
SfcI CTRYAG 1 cut(s) 518
SinI GGWCC 3 cut(s) 466, 805, 871
SmiMI CAYNNNNRTG 2 cut(s) 213, 1202
SmlI CTYRAG 7 cut(s) 120, 201, 231, 237, 270, 572, 749
SmoI CTYRAG 7 cut(s) 120, 201, 231, 237, 270, 572, 749
SsiI CCGC 4 cut(s) 107, 275, 728, 1615
SspMI CTAG 1 cut(s) 1110
StyD4I CCNGG 8 cut(s) 65, 171, 252, 291, 370, 421, 796, 1654
StyI CCWWGG 5 cut(s) 342, 462, 1073, 1459, 1592
TaaI ACNGT 2 cut(s) 979, 1151
TaqI TCGA 2 cut(s) 5, 194
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 4 cut(s) 31, 548, 1505, 1624
Tru1I TTAA 7 cut(s) 321, 681, 750, 903, 1020, 1146, 1523
Tru9I TTAA 7 cut(s) 321, 681, 750, 903, 1020, 1146, 1523
TscAI CASTG 1 cut(s) 417
TseFI GTSAC 2 cut(s) 856, 921
TseI GCWGC 2 cut(s) 476, 596
Tsp45I GTSAC 2 cut(s) 856, 921
TspDTI ATGAA 6 cut(s) 23, 828, 1013, 1205, 1413, 1477
TspRI CASTG 1 cut(s) 417
Vha464I CTTAAG 1 cut(s) 749
VpaK11BI GGWCC 3 cut(s) 466, 805, 871
XapI RAATTY 5 cut(s) 61, 349, 971, 1193, 1484
XceI RCATGY 4 cut(s) 212, 218, 917, 1302
XmnI GAANNNNTTC 1 cut(s) 392
XspI CTAG 1 cut(s) 1110
Zsp2I ATGCAT 1 cut(s) 1498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.