Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007264

Physical Location & Seq

Genomic Coordinates Reverse (-)

70770924 .. 70773302

Gene Structure 2379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0584900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCTTGGAAACCTAGTCTGTTTAACAAACACAGACAGATCTCCTCCGTTTGGAGTCTCTCTCTTCCGAGAAGCTCATACTCCGATCAACACTGTCTCCCCAACGCCTCGGTTCTCCAAATTGGTCTCCCCACCAACTCAAAACCCTCATTGTTTTTCATTGGAACCATCACTTTCTGACACAATGTCGCCAATATTGATCTGTACATTTCTGATATTGTGCTTAATGTCAACGATGGCGGTTTCGATGCGGTTCGACCTTCAATCTGGCGCCACTAAATGCATCTCAGACGAAATAAAGAGCAATTCCATGACTGTGGGCAAGTACTCCACCGTCAATCCCAATGAGGGCTTTCCTCTTCCTGATACGCACAAAGTCACTGTCAGGGTGACCTCACCTCATGGCAATAGTTATCACCATGGGGATCTTGTGGATACGGGTAATTTTGCCTTCACTGCGGCGGAGACTGGTGATTATTCAGTATGCTTTTGGGTAACTGATCATAAGCCTCCGACCACGGTGACGATTGATTTTGACTGGAAAACTGGAGTTGAGGCCAAGGACTGGTCCAAGGTTGCCAAGAAAGGGCAGATTGAAATGATGGAACTGGAGCTGAAAAAGCTGTTTGATACTGTGACGTCCATTCATGATGAGATGTTTTATCTTCGTGAAAGGGAGGAAGAAATGCAACAACTTAATAGAGCAACTAACTCCAAGATGGCGACGTTTAGCTTCCTTTCTCTTGTAGTTTGCTTGTCTGTGGCCGGTTTGCAATTATGGCATCTCAAGATGTTCTTTGAGAGGAAGAAGCTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009909 GO:0009987 GO:0010224 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048580 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0099402 GO:1901360 GO:2000024 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SWIB

Protein Analysis

272

Amino Acids

30.59

Weight (kDa)

6.3

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	83 - 267	6.4e-52	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01890 AT5G14170
fragaria_vesca	FvH4_6g53310 FvH4_6g53310 FvH4_6g53310
malus_domestica	MD09G1011600.v1.1 MD17G1012300.v1.1
prunus_persica	Prupe.3G305400_v2.0.a1 Prupe.3G305400_v2.0.a1 Prupe.3G305400_v2.0.a1
pyrus_communis	pycom111g00990 pycom17g00980
rosa_chinensis	RchiOBHm_Chr2g0175471
rosa_laevigata	RLG00000022330
rosa_multiflora	Rmu_sc0003302.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077300
rosa_rugosa	Rorug02G0584700 Rorug02G0584800 Rorug02G0584900 Rorug02G0585000
rosa_samantha	Rh2AG664500 Rh2BG675200 Rh2CG638400 Rh2DG689200
rosa_wichuraiana	Rw2G054460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	641
AccB1I	GGYRCC	1 cut(s)	269
AccB7I	CCANNNNNTGG	1 cut(s)	564
AciI	CCGC	4 cut(s)	239, 250, 458, 461
AclWI	GGATC	1 cut(s)	432
AcoI	YGGCCR	1 cut(s)	762
AcyI	GRCGYC	2 cut(s)	270, 638
AfaI	GTAC	2 cut(s)	205, 326
AfiI	CCNNNNNNNGG	4 cut(s)	50, 347, 564, 585
AgsI	TTSAA	2 cut(s)	263, 596
AhdI	GACNNNNNGTC	1 cut(s)	184
AluBI	AGCT	5 cut(s)	74, 613, 622, 732, 811
AluI	AGCT	5 cut(s)	74, 613, 622, 732, 811
Alw26I	GTCTC	4 cut(s)	61, 100, 130, 458
AlwI	GGATC	1 cut(s)	432
AoxI	GGCC	2 cut(s)	555, 762
ArsI	GACNNNNNNTTYG	2 cut(s)	366, 398
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	567
AsuHPI	GGTGA	5 cut(s)	387, 400, 407, 482, 532
AvaII	GGWCC	1 cut(s)	567
BanI	GGYRCC	1 cut(s)	269
BccI	CCATC	4 cut(s)	175, 229, 595, 712
BciVI	GTATCC	1 cut(s)	427
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	4 cut(s)	61, 100, 130, 458
BfaI	CTAG	2 cut(s)	14, 817
BfoI	RGCGCY	1 cut(s)	273
BfuI	GTATCC	1 cut(s)	427
BglII	AGATCT	1 cut(s)	38
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
BmcAI	AGTACT	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	567
BmeRI	GACNNNNNGTC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	567
BmiI	GGNNCC	2 cut(s)	165, 271
BmsI	GCATC	3 cut(s)	237, 291, 790
BplI	GAGNNNNNCTC	2 cut(s)	45, 77
BpmI	CTGGAG	2 cut(s)	567, 629
BpuEI	CTTGAG	1 cut(s)	770
BsaHI	GRCGYC	2 cut(s)	270, 638
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	5 cut(s)	107, 418, 516, 558, 570
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 347, 564, 585
Bse118I	RCCGGY	1 cut(s)	764
Bse1I	ACTGG	5 cut(s)	472, 542, 550, 569, 612
BseDI	CCNNGG	5 cut(s)	107, 418, 516, 558, 570
BseLI	CCNNNNNNNGG	4 cut(s)	50, 347, 564, 585
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	5 cut(s)	472, 542, 550, 569, 612
BseRI	GAGGAG	2 cut(s)	33, 803
BshFI	GGCC	2 cut(s)	557, 764
BshNI	GGYRCC	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	765
BslI	CCNNNNNNNGG	4 cut(s)	50, 347, 564, 585
BsmAI	GTCTC	4 cut(s)	61, 100, 130, 458
BsnI	GGCC	2 cut(s)	557, 764
Bso31I	GGTCTC	1 cut(s)	130
Bsp1407I	TGTACA	1 cut(s)	203
Bsp143I	GATC	5 cut(s)	38, 84, 198, 424, 499
Bsp19I	CCATGG	1 cut(s)	418
BspACI	CCGC	4 cut(s)	239, 250, 458, 461
BspANI	GGCC	2 cut(s)	557, 764
BspCNI	CTCAG	1 cut(s)	299
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	2 cut(s)	165, 271
BspPI	GGATC	1 cut(s)	432
BspT107I	GGYRCC	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	764
BsrGI	TGTACA	1 cut(s)	203
BsrI	ACTGG	5 cut(s)	472, 542, 550, 569, 612
BssAI	RCCGGY	1 cut(s)	764
BssECI	CCNNGG	5 cut(s)	107, 418, 516, 558, 570
BssMI	GATC	5 cut(s)	38, 84, 198, 424, 499
BssNI	GRCGYC	2 cut(s)	270, 638
BssT1I	CCWWGG	3 cut(s)	418, 558, 570
Bst4CI	ACNGT	6 cut(s)	94, 316, 334, 382, 520, 634
Bst6I	CTCTTC	2 cut(s)	68, 363
BstACI	GRCGYC	2 cut(s)	270, 638
BstAUI	TGTACA	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	286
BstDSI	CCRYGG	2 cut(s)	418, 516
BstEII	GGTNACC	1 cut(s)	388
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	5 cut(s)	41, 87, 201, 427, 502
BstMAI	GTCTC	4 cut(s)	61, 100, 130, 458
BstMBI	GATC	5 cut(s)	38, 84, 198, 424, 499
BstMWI	GCNNNNNNNGC	3 cut(s)	455, 619, 778
BstPI	GGTNACC	1 cut(s)	388
BstX2I	RGATCY	2 cut(s)	38, 424
BstXI	CCANNNNNNTGG	1 cut(s)	316
BstYI	RGATCY	2 cut(s)	38, 424
BsuI	GTATCC	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	557, 764
BtgI	CCRYGG	2 cut(s)	418, 516
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	3 cut(s)	90, 378, 453
CciI	TCATGA	1 cut(s)	646
CfoI	GCGC	1 cut(s)	272
Cfr10I	RCCGGY	1 cut(s)	764
Cfr13I	GGNCC	1 cut(s)	567
Csp6I	GTAC	2 cut(s)	204, 325
CviAII	CATG	4 cut(s)	310, 401, 419, 647
CviJI	RGCY	9 cut(s)	74, 351, 508, 557, 613, 622, 732, 764, 811
CviKI_1	RGCY	9 cut(s)	74, 351, 508, 557, 613, 622, 732, 764, 811
CviQI	GTAC	2 cut(s)	204, 325
DdeI	CTNAG	1 cut(s)	286
DinI	GGCGCC	1 cut(s)	271
DpnI	GATC	5 cut(s)	40, 86, 200, 426, 501
DpnII	GATC	5 cut(s)	38, 84, 198, 424, 499
DriI	GACNNNNNGTC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	762
Eam1104I	CTCTTC	2 cut(s)	68, 363
Eam1105I	GACNNNNNGTC	1 cut(s)	184
EarI	CTCTTC	2 cut(s)	68, 363
EciI	GGCGGA	1 cut(s)	476
Eco130I	CCWWGG	3 cut(s)	418, 558, 570
Eco31I	GGTCTC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	567
Eco91I	GGTNACC	1 cut(s)	388
EcoO65I	GGTNACC	1 cut(s)	388
EcoT14I	CCWWGG	3 cut(s)	418, 558, 570
EcoT22I	ATGCAT	1 cut(s)	284
EgeI	GGCGCC	1 cut(s)	271
EheI	GGCGCC	1 cut(s)	271
ErhI	CCWWGG	3 cut(s)	418, 558, 570
FaeI	CATG	4 cut(s)	313, 404, 422, 650
FaiI	YATR	8 cut(s)	78, 311, 402, 420, 484, 504, 648, 778
FalI	AAGNNNNNCTT	2 cut(s)	779, 811
FatI	CATG	4 cut(s)	309, 400, 418, 646
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	1 cut(s)	459
Fsp4HI	GCNGC	1 cut(s)	459
FspBI	CTAG	2 cut(s)	14, 817
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	1 cut(s)	459
GsuI	CTGGAG	2 cut(s)	567, 629
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	557, 764
HapII	CCGG	1 cut(s)	765
HhaI	GCGC	1 cut(s)	272
Hin1I	GRCGYC	2 cut(s)	270, 638
Hin1II	CATG	4 cut(s)	313, 404, 422, 650
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	54
HpaII	CCGG	1 cut(s)	765
HphI	GGTGA	5 cut(s)	387, 400, 407, 482, 532
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	6 cut(s)	68, 84, 178, 213, 289, 513
Hpy188III	TCNNGA	4 cut(s)	362, 647, 668, 787
Hpy8I	GTNNAC	1 cut(s)	231
Hpy99I	CGWCG	1 cut(s)	727
HpyAV	CCTTC	2 cut(s)	269, 460
HpyCH4III	ACNGT	6 cut(s)	94, 316, 334, 382, 520, 634
HpyCH4IV	ACGT	2 cut(s)	638, 725
HpyCH4V	TGCA	3 cut(s)	282, 688, 772
HpyF10VI	GCNNNNNNNGC	3 cut(s)	455, 619, 778
HpyF3I	CTNAG	1 cut(s)	286
HpySE526I	ACGT	2 cut(s)	638, 725
Hsp92I	GRCGYC	2 cut(s)	270, 638
Hsp92II	CATG	4 cut(s)	313, 404, 422, 650
HspAI	GCGC	1 cut(s)	270
KasI	GGCGCC	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	5 cut(s)	38, 84, 198, 424, 499
LmnI	GCTCC	2 cut(s)	610, 816
LpnPI	CCDG	9 cut(s)	252, 370, 375, 453, 523, 531, 550, 593, 778
LweI	GCATC	3 cut(s)	237, 291, 790
MaeI	CTAG	2 cut(s)	14, 817
MaeII	ACGT	2 cut(s)	638, 725
MaeIII	GTNAC	5 cut(s)	376, 388, 493, 520, 634
MalI	GATC	5 cut(s)	40, 86, 200, 426, 501
MboI	GATC	5 cut(s)	38, 84, 198, 424, 499
MboII	GAAGA	5 cut(s)	55, 350, 656, 692, 817
MflI	RGATCY	2 cut(s)	38, 424
MluCI	AATT	4 cut(s)	119, 304, 442, 773
Mly113I	GGCGCC	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	536
Mph1103I	ATGCAT	1 cut(s)	284
MseI	TTAA	3 cut(s)	23, 224, 696
MslI	CAYNNNNRTG	1 cut(s)	314
MspI	CCGG	1 cut(s)	765
MwoI	GCNNNNNNNGC	3 cut(s)	455, 619, 778
NarI	GGCGCC	1 cut(s)	270
NcoI	CCATGG	1 cut(s)	418
NdeII	GATC	5 cut(s)	38, 84, 198, 424, 499
NlaIII	CATG	4 cut(s)	313, 404, 422, 650
NlaIV	GGNNCC	2 cut(s)	165, 271
NmuCI	GTSAC	4 cut(s)	376, 388, 520, 634
NsiI	ATGCAT	1 cut(s)	284
PagI	TCATGA	1 cut(s)	646
PflMI	CCANNNNNTGG	1 cut(s)	564
PkrI	GCNGC	1 cut(s)	460
PleI	GAGTC	1 cut(s)	62
PluTI	GGCGCC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	62
PspEI	GGTNACC	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	165, 271
PspPI	GGNCC	1 cut(s)	567
PsuI	RGATCY	2 cut(s)	38, 424
RsaI	GTAC	2 cut(s)	205, 326
RsaNI	GTAC	2 cut(s)	204, 325
RseI	CAYNNNNRTG	1 cut(s)	314
SaqAI	TTAA	3 cut(s)	23, 224, 696
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	5 cut(s)	38, 84, 198, 424, 499
Sau96I	GGNCC	1 cut(s)	567
ScaI	AGTACT	1 cut(s)	326
SchI	GAGTC	1 cut(s)	63
SfaNI	GCATC	3 cut(s)	237, 291, 790
SfoI	GGCGCC	1 cut(s)	271
SinI	GGWCC	1 cut(s)	567
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	785
SmoI	CTYRAG	1 cut(s)	785
Sse9I	AATT	4 cut(s)	119, 304, 442, 773
SsiI	CCGC	4 cut(s)	239, 250, 458, 461
SspDI	GGCGCC	1 cut(s)	269
SspI	AATATT	1 cut(s)	195
SspMI	CTAG	2 cut(s)	14, 817
StyI	CCWWGG	3 cut(s)	418, 558, 570
TaaI	ACNGT	6 cut(s)	94, 316, 334, 382, 520, 634
TaiI	ACGT	2 cut(s)	641, 728
TaqI	TCGA	2 cut(s)	245, 255
TasI	AATT	4 cut(s)	119, 304, 442, 773
TatI	WGTACW	2 cut(s)	203, 324
TauI	GCSGC	1 cut(s)	461
Tru1I	TTAA	3 cut(s)	23, 224, 696
Tru9I	TTAA	3 cut(s)	23, 224, 696
TscAI	CASTG	3 cut(s)	97, 385, 460
TseFI	GTSAC	4 cut(s)	376, 388, 520, 634
Tsp45I	GTSAC	4 cut(s)	376, 388, 520, 634
TspDTI	ATGAA	2 cut(s)	147, 635
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	3 cut(s)	97, 385, 460
Van91I	CCANNNNNTGG	1 cut(s)	564
VpaK11BI	GGWCC	1 cut(s)	567
XspI	CTAG	2 cut(s)	14, 817
ZraI	GACGTC	1 cut(s)	639
ZrmI	AGTACT	1 cut(s)	326
Zsp2I	ATGCAT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.