RchiOBHm_Chr2g0175471

SWI SNF complex component SNF12 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
87658352 .. 87661980
3629 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54254

Sequence Viewer

Length: 1671 bp
ATGTCTATGAACAATAATAACCCACCTAAGAATCTTGGAGCGTCTTCGTCGCCCTTTAGAAATTCCGGGATGGTCGCCCCATCTATGTCTGCAAACCCTTCGTTTCCGCAATCACAGGCTCAAGCACAACTTGGGGCTGGTTTTCAAGCACAATTTCAGCTCTCTCAAGCCCAGGCGATTGCGCAAGCTCAGTCAAAAGCTCAAGCACATGCACATGCACATGCGCAAGCACAGGCTCAAGCTCAAGCACATCATGCCCAGGCTCAGGCTCAAGCGGCTCACGCCCAATTCCAGGCTCAGTTACAGGCTCAGGCGATGTCCCTTAACCAGAACCAAGCAGGTTCCATGGGGAATTCACCCTCATATTCCACACCCGGAAGTGGAAGTGTGAAGCGCTTCCCTCAAAAACCTCCAGTGCGCCCTCCTGGTCTTTCTCCTCCAAACATGATCTCACCGATTAGAACCATGGACCTCTCAGCTGCTAATCGTAAAAAGAAGCAGAAGCTTCCCGACAAACAGCTACAGGACAAAGTAGCCACCATATTGCCTGAATCTGCTCTATACACCCAGCTTCTTGAGTTTGAGGCTCGTGTTGATGCTGCGCTTACAAGAAAGAAAGTTGACATCCAAGAGGCTCTGAAAAGCCCCCCTTCCATTCAGAAAACACTTCGCATTTATGTTTTTAACACTTTTGCCAATCAGGTTCGCTCAATTCCACAGAAGCCAAATGCTGAGCCCCCTACTTGGACGCTTAAGATAGTTGGAAGGATCTTGGAAGATGGGATTGACCCCGATCAGCCTGGAGTGGTCCAGAAATCAAATCCCTTTTACCCAAAGTTTTCATCTTTCTTCAAGAGAGTGACCATTTCTTTGGACCAGAGGCTGTATCCTGATAATCATATCATTAACTGGGAACATGCAAGGTCAGCTGCACCACAGGAGGGATTTGAGGTAAAGAGAAAAGGGGACAAAGAATTTACTGTGAATATACGCTTGGAAATGAATTATGCGCCTGAGAAGTTTAAGCTTTCACAACCTCTGATGGAAGTTCTTGGTATTGAGGTGGAAACTCGTCCAAGGATAATAGCTTCAATCTGGCACTATGTGAAGGCTAGGAAATTGCAGAACCCAAATGACCCCTCTTTCTTTAACTGTGATCCACCTCTTCAAAAAGTATTCGGAGAGGAAAAGATGAAATTCACTATGGTGTCCCAGAAGATATCTCAGCACTTGTTTCCCCCACAACCTATACATTTGGAGCACAAGATGAGGCTTTCTGGGAATAGTCCAGCTGGAACAGCATGTTATGATGTGTTGGTAGATGTACCTTTTCCAATTCAAAGGGAATTATCTACTCTATTGGCCAATTCGGAGAAAAACAAAGAAATTGACGCCTGTGATGAAGCGATATGTGGAGCTATCAGAAAAATCCACGAGCATCGTCGCAGGCGGGCTTTTTTCCTTGGATTTAGTCAATCACCTGTTGAATTCATCAATGCACTGATTGAATCTCAAAGCAAGGATTTAAAGCTTGTAGCTGGAGTAGCAAGCCGTAGTGCTGAGAAAGAGCGCCGGTCAGATTTCTTCCATCAACCATGGGTTGAAGATGCTGTTATCCGCTATTTGAATCGGAAGCCAGTTGCAGGAAGTGATCATCCTGGAAGCACATGA

Protein Analysis

556

Amino Acids

61.95

Weight (kDa)

9.65

Isoelectric Point (pI)

57.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 339 - 411 5.1e-24 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 183, 225
Acc36I ACCTGC 1 cut(s) 329
AciI CCGC 4 cut(s) 107, 275, 1450, 1618
AclWI GGATC 2 cut(s) 776, 1151
AcoI YGGCCR 1 cut(s) 1362
AcsI RAATTY 5 cut(s) 61, 352, 974, 1196, 1487
AcyI GRCGYC 1 cut(s) 1392
AdeI CACNNNGTG 1 cut(s) 1105
AfaI GTAC 1 cut(s) 1326
AfeI AGCGCT 1 cut(s) 395
AfiI CCNNNNNNNGG 6 cut(s) 265, 292, 380, 744, 941, 1643
AflII CTTAAG 1 cut(s) 752
AgsI TTSAA 9 cut(s) 146, 853, 1092, 1169, 1340, 1487, 1508, 1604, 1627
AjnI CCWGG 6 cut(s) 171, 258, 291, 424, 799, 1657
AjuI GAANNNNNNNTTGG 2 cut(s) 977, 1009
AleI CACNNNNGTG 1 cut(s) 1205
Alw21I GWGCWC 1 cut(s) 1263
AlwI GGATC 2 cut(s) 776, 1151
AlwNI CAGNNNCTG 1 cut(s) 883
Aor51HI AGCGCT 1 cut(s) 395
AoxI GGCC 1 cut(s) 1362
ApeKI GCWGC 3 cut(s) 479, 599, 929
ApoI RAATTY 5 cut(s) 61, 352, 974, 1196, 1487
ArsI GACNNNNNNTTYG 2 cut(s) 853, 885
Asp700I GAANNNNTTC 1 cut(s) 395
AspLEI GCGC 7 cut(s) 184, 226, 396, 420, 604, 1012, 1572
AspS9I GGNCC 3 cut(s) 469, 808, 874
AsuC2I CCSGG 2 cut(s) 67, 375
AsuHPI GGTGA 3 cut(s) 348, 444, 1470
AvaII GGWCC 3 cut(s) 469, 808, 874
BalI TGGCCA 1 cut(s) 1364
BanII GRGCYC 1 cut(s) 738
BauI CACGAG 2 cut(s) 588, 1433
BbsI GAAGAC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 1263
BbvI GCAGC 3 cut(s) 466, 586, 916
BccI CCATC 5 cut(s) 64, 88, 773, 1036, 1596
BceAI ACGGC 1 cut(s) 1536
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BciT130I CCWGG 6 cut(s) 173, 260, 293, 426, 801, 1659
BciVI GTATCC 1 cut(s) 897
BclI TGATCA 1 cut(s) 1651
BcnI CCSGG 2 cut(s) 67, 375
BfaI CTAG 1 cut(s) 1113
BfmI CTRYAG 1 cut(s) 521
BfoI RGCGCY 2 cut(s) 397, 1573
BfrI CTTAAG 1 cut(s) 752
BfuAI ACCTGC 1 cut(s) 329
BfuI GTATCC 1 cut(s) 897
BisI GCNGC 4 cut(s) 276, 480, 600, 930
BlpI GCTNAGC 1 cut(s) 732
BlsI GCNGC 4 cut(s) 277, 481, 601, 931
Bme1390I CCNGG 8 cut(s) 67, 173, 260, 293, 375, 426, 801, 1659
Bme18I GGWCC 3 cut(s) 469, 808, 874
BmgT120I GGNCC 3 cut(s) 469, 808, 874
BmiI GGNNCC 1 cut(s) 343
BmrFI CCNGG 8 cut(s) 67, 173, 260, 293, 375, 426, 801, 1659
BmrI ACTGGG 1 cut(s) 919
BmsI GCATC 3 cut(s) 586, 1447, 1597
BmuI ACTGGG 1 cut(s) 919
BpiI GAAGAC 1 cut(s) 36
BpmI CTGGAG 3 cut(s) 396, 822, 1560
Bpu10I CCTNAGC 2 cut(s) 264, 309
Bpu1102I GCTNAGC 1 cut(s) 732
BpuEI CTTGAG 7 cut(s) 105, 150, 186, 222, 228, 255, 596
BpuMI CCSGG 2 cut(s) 67, 375
BsaHI GRCGYC 1 cut(s) 1392
BsaJI CCNNGG 7 cut(s) 171, 258, 345, 465, 1076, 1462, 1595
Bsc4I CCNNNNNNNGG 6 cut(s) 265, 292, 380, 744, 941, 1643
Bse118I RCCGGY 1 cut(s) 1572
Bse1I ACTGG 3 cut(s) 413, 914, 1637
BseBI CCWGG 6 cut(s) 173, 260, 293, 426, 801, 1659
BseDI CCNNGG 7 cut(s) 171, 258, 345, 465, 1076, 1462, 1595
BseGI GGATG 3 cut(s) 75, 624, 1654
BseLI CCNNNNNNNGG 6 cut(s) 265, 292, 380, 744, 941, 1643
BseMII CTCAG 9 cut(s) 203, 278, 311, 323, 489, 723, 1005, 1238, 1551
BseNI ACTGG 3 cut(s) 413, 914, 1637
BseRI GAGGAG 1 cut(s) 426
BseXI GCAGC 3 cut(s) 466, 586, 916
BseYI CCCAGC 1 cut(s) 567
BsgI GTGCAG 1 cut(s) 915
BshFI GGCC 1 cut(s) 1364
BsiHKAI GWGCWC 1 cut(s) 1263
BsiSI CCGG 3 cut(s) 66, 375, 1573
BslFI GGGAC 3 cut(s) 304, 980, 1195
BslI CCNNNNNNNGG 6 cut(s) 265, 292, 380, 744, 941, 1643
BsmFI GGGAC 3 cut(s) 304, 980, 1195
BsnI GGCC 1 cut(s) 1364
Bsp1286I GDGCHC 2 cut(s) 738, 1263
Bsp143I GATC 5 cut(s) 447, 768, 793, 1156, 1651
Bsp1720I GCTNAGC 1 cut(s) 732
Bsp19I CCATGG 3 cut(s) 345, 465, 1595
BspACI CCGC 4 cut(s) 107, 275, 1450, 1618
BspANI GGCC 1 cut(s) 1364
BspCNI CTCAG 9 cut(s) 202, 277, 310, 322, 488, 724, 1006, 1237, 1552
BspLI GGNNCC 1 cut(s) 343
BspMI ACCTGC 1 cut(s) 329
BspPI GGATC 2 cut(s) 776, 1151
BspTI CTTAAG 1 cut(s) 752
BsrFI RCCGGY 1 cut(s) 1572
BsrI ACTGG 3 cut(s) 413, 914, 1637
BssAI RCCGGY 1 cut(s) 1572
BssECI CCNNGG 7 cut(s) 171, 258, 345, 465, 1076, 1462, 1595
BssMI GATC 5 cut(s) 447, 768, 793, 1156, 1651
BssNI GRCGYC 1 cut(s) 1392
BssSI CACGAG 2 cut(s) 588, 1433
BssT1I CCWWGG 5 cut(s) 345, 465, 1076, 1462, 1595
Bst2BI CACGAG 2 cut(s) 588, 1433
Bst2UI CCWGG 6 cut(s) 173, 260, 293, 426, 801, 1659
Bst4CI ACNGT 2 cut(s) 982, 1154
Bst6I CTCTTC 1 cut(s) 1170
BstACI GRCGYC 1 cut(s) 1392
BstAFI CTTAAG 1 cut(s) 752
BstAPI GCANNNNNTGC 1 cut(s) 254
BstC8I GCNNGC 5 cut(s) 186, 228, 1448, 1452, 1549
BstDSI CCRYGG 3 cut(s) 345, 465, 1595
BstF5I GGATG 3 cut(s) 75, 624, 1654
BstH2I RGCGCY 2 cut(s) 397, 1573
BstHHI GCGC 7 cut(s) 184, 226, 396, 420, 604, 1012, 1572
BstKTI GATC 5 cut(s) 450, 771, 796, 1159, 1654
BstMBI GATC 5 cut(s) 447, 768, 793, 1156, 1651
BstMWI GCNNNNNNNGC 6 cut(s) 254, 275, 281, 926, 1298, 1544
BstNI CCWGG 6 cut(s) 173, 260, 293, 426, 801, 1659
BstNSI RCATGY 5 cut(s) 212, 218, 224, 920, 1305
BstSCI CCNGG 8 cut(s) 65, 171, 258, 291, 373, 424, 799, 1657
BstSFI CTRYAG 1 cut(s) 521
BstV1I GCAGC 3 cut(s) 466, 586, 916
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 768
BstXI CCANNNNNNTGG 1 cut(s) 871
BstYI RGATCY 1 cut(s) 768
BsuI GTATCC 1 cut(s) 897
BsuRI GGCC 1 cut(s) 1364
BtgI CCRYGG 3 cut(s) 345, 465, 1595
BtgZI GCGATG 1 cut(s) 329
BtsCI GGATG 3 cut(s) 75, 624, 1654
BtsIMutI CAGTG 2 cut(s) 420, 1499
BveI ACCTGC 1 cut(s) 329
Cac8I GCNNGC 5 cut(s) 186, 228, 1448, 1452, 1549
CaiI CAGNNNCTG 1 cut(s) 883
CfoI GCGC 7 cut(s) 184, 226, 396, 420, 604, 1012, 1572
Cfr10I RCCGGY 1 cut(s) 1572
Cfr13I GGNCC 3 cut(s) 469, 808, 874
CseI GACGC 3 cut(s) 30, 757, 1400
Csp6I GTAC 1 cut(s) 1325
CviQI GTAC 1 cut(s) 1325
DpnI GATC 5 cut(s) 449, 770, 795, 1158, 1653
DpnII GATC 5 cut(s) 447, 768, 793, 1156, 1651
DraI TTTAAA 1 cut(s) 1527
DraIII CACNNNGTG 1 cut(s) 1105
EaeI YGGCCR 1 cut(s) 1362
Eam1104I CTCTTC 1 cut(s) 1170
EarI CTCTTC 1 cut(s) 1170
Eco130I CCWWGG 5 cut(s) 345, 465, 1076, 1462, 1595
Eco24I GRGCYC 1 cut(s) 738
Eco32I GATATC 1 cut(s) 1221
Eco47I GGWCC 3 cut(s) 469, 808, 874
Eco47III AGCGCT 1 cut(s) 395
EcoRI GAATTC 2 cut(s) 352, 1487
EcoRII CCWGG 6 cut(s) 171, 258, 291, 424, 799, 1657
EcoRV GATATC 1 cut(s) 1221
EcoT14I CCWWGG 5 cut(s) 345, 465, 1076, 1462, 1595
EcoT38I GRGCYC 1 cut(s) 738
ErhI CCWWGG 5 cut(s) 345, 465, 1076, 1462, 1595
FalI AAGNNNNNCTT 4 cut(s) 114, 146, 634, 666
FaqI GGGAC 3 cut(s) 304, 980, 1195
FauI CCCGC 1 cut(s) 1443
FbaI TGATCA 1 cut(s) 1651
Fnu4HI GCNGC 4 cut(s) 276, 480, 600, 930
FokI GGATG 3 cut(s) 82, 611, 1641
FriOI GRGCYC 1 cut(s) 738
Fsp4HI GCNGC 4 cut(s) 276, 480, 600, 930
FspBI CTAG 1 cut(s) 1113
FspI TGCGCA 2 cut(s) 183, 225
GlaI GCGC 7 cut(s) 183, 225, 395, 419, 603, 1011, 1571
GluI GCNGC 4 cut(s) 276, 480, 600, 930
GsaI CCCAGC 1 cut(s) 571
GsuI CTGGAG 3 cut(s) 396, 822, 1560
HaeII RGCGCY 2 cut(s) 397, 1573
HaeIII GGCC 1 cut(s) 1364
HapII CCGG 3 cut(s) 66, 375, 1573
HgaI GACGC 3 cut(s) 30, 757, 1400
HhaI GCGC 7 cut(s) 184, 226, 396, 420, 604, 1012, 1572
Hin1I GRCGYC 1 cut(s) 1392
Hin6I GCGC 7 cut(s) 182, 224, 394, 418, 602, 1010, 1570
HinP1I GCGC 7 cut(s) 182, 224, 394, 418, 602, 1010, 1570
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HindIII AAGCTT 3 cut(s) 503, 1025, 1529
HinfI GANTC 4 cut(s) 31, 551, 1508, 1627
HpaII CCGG 3 cut(s) 66, 375, 1573
HphI GGTGA 3 cut(s) 348, 444, 1470
Hpy166II GTNNAC 1 cut(s) 622
Hpy188I TCNGA 8 cut(s) 639, 660, 1041, 1181, 1372, 1424, 1579, 1632
Hpy188III TCNNGA 5 cut(s) 509, 575, 811, 853, 890
Hpy8I GTNNAC 1 cut(s) 622
Hpy99I CGWCG 2 cut(s) 52, 1446
HpyAV CCTTC 4 cut(s) 108, 660, 759, 1102
HpyCH4III ACNGT 2 cut(s) 982, 1154
HpyCH4V TGCA 8 cut(s) 92, 212, 218, 920, 932, 1123, 1499, 1643
HpyF10VI GCNNNNNNNGC 6 cut(s) 254, 275, 281, 926, 1298, 1544
Hsp92I GRCGYC 1 cut(s) 1392
HspAI GCGC 7 cut(s) 182, 224, 394, 418, 602, 1010, 1570
Ksp22I TGATCA 1 cut(s) 1651
Kzo9I GATC 5 cut(s) 447, 768, 793, 1156, 1651
LmnI GCTCC 3 cut(s) 38, 1258, 1415
Lsp1109I GCAGC 3 cut(s) 466, 586, 916
LweI GCATC 3 cut(s) 586, 1447, 1597
MaeI CTAG 1 cut(s) 1113
MaeIII GTNAC 2 cut(s) 300, 859
MalI GATC 5 cut(s) 449, 770, 795, 1158, 1653
MboI GATC 5 cut(s) 447, 768, 793, 1156, 1651
MboII GAAGA 7 cut(s) 36, 788, 841, 1157, 1228, 1576, 1616
MflI RGATCY 1 cut(s) 768
MhlI GDGCHC 2 cut(s) 738, 1263
MlsI TGGCCA 1 cut(s) 1364
MluNI TGGCCA 1 cut(s) 1364
MmeI TCCRAC 1 cut(s) 742
Mox20I TGGCCA 1 cut(s) 1364
MroXI GAANNNNTTC 1 cut(s) 395
MscI TGGCCA 1 cut(s) 1364
MseI TTAA 7 cut(s) 324, 684, 753, 906, 1023, 1149, 1526
MslI CAYNNNNRTG 3 cut(s) 213, 219, 1205
Msp20I TGGCCA 1 cut(s) 1364
MspA1I CMGCKG 3 cut(s) 479, 929, 1292
MspCI CTTAAG 1 cut(s) 752
MspI CCGG 3 cut(s) 66, 375, 1573
MspR9I CCNGG 8 cut(s) 67, 173, 260, 293, 375, 426, 801, 1659
MvaI CCWGG 6 cut(s) 173, 260, 293, 426, 801, 1659
MwoI GCNNNNNNNGC 6 cut(s) 254, 275, 281, 926, 1298, 1544
NciI CCSGG 2 cut(s) 67, 375
NcoI CCATGG 3 cut(s) 345, 465, 1595
NdeII GATC 5 cut(s) 447, 768, 793, 1156, 1651
NlaIV GGNNCC 1 cut(s) 343
NmuCI GTSAC 1 cut(s) 859
NsbI TGCGCA 2 cut(s) 183, 225
NspI RCATGY 5 cut(s) 212, 218, 224, 920, 1305
OliI CACNNNNGTG 1 cut(s) 1205
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 4 cut(s) 31, 551, 1508, 1627
PfoI TCCNGGA 2 cut(s) 65, 1657
PkrI GCNGC 4 cut(s) 277, 481, 601, 931
Psp6I CCWGG 6 cut(s) 171, 258, 291, 424, 799, 1657
PspFI CCCAGC 1 cut(s) 567
PspGI CCWGG 6 cut(s) 171, 258, 291, 424, 799, 1657
PspN4I GGNNCC 1 cut(s) 343
PspPI GGNCC 3 cut(s) 469, 808, 874
PstNI CAGNNNCTG 1 cut(s) 883
PsuI RGATCY 1 cut(s) 768
PvuII CAGCTG 3 cut(s) 479, 929, 1292
RsaI GTAC 1 cut(s) 1326
RsaNI GTAC 1 cut(s) 1325
RseI CAYNNNNRTG 3 cut(s) 213, 219, 1205
SaqAI TTAA 7 cut(s) 324, 684, 753, 906, 1023, 1149, 1526
SatI GCNGC 4 cut(s) 276, 480, 600, 930
Sau3AI GATC 5 cut(s) 447, 768, 793, 1156, 1651
Sau96I GGNCC 3 cut(s) 469, 808, 874
ScrFI CCNGG 8 cut(s) 67, 173, 260, 293, 375, 426, 801, 1659
SduI GDGCHC 2 cut(s) 738, 1263
SfaNI GCATC 3 cut(s) 586, 1447, 1597
SfcI CTRYAG 1 cut(s) 521
SinI GGWCC 3 cut(s) 469, 808, 874
SmiMI CAYNNNNRTG 3 cut(s) 213, 219, 1205
SmlI CTYRAG 8 cut(s) 120, 165, 201, 237, 243, 270, 575, 752
SmoI CTYRAG 8 cut(s) 120, 165, 201, 237, 243, 270, 575, 752
SsiI CCGC 4 cut(s) 107, 275, 1450, 1618
SspMI CTAG 1 cut(s) 1113
StyD4I CCNGG 8 cut(s) 65, 171, 258, 291, 373, 424, 799, 1657
StyI CCWWGG 5 cut(s) 345, 465, 1076, 1462, 1595
TaaI ACNGT 2 cut(s) 982, 1154
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 4 cut(s) 31, 551, 1508, 1627
Tru1I TTAA 7 cut(s) 324, 684, 753, 906, 1023, 1149, 1526
Tru9I TTAA 7 cut(s) 324, 684, 753, 906, 1023, 1149, 1526
TscAI CASTG 2 cut(s) 420, 1506
TseFI GTSAC 1 cut(s) 859
TseI GCWGC 3 cut(s) 479, 599, 929
Tsp45I GTSAC 1 cut(s) 859
TspDTI ATGAA 6 cut(s) 23, 831, 1016, 1208, 1416, 1480
TspRI CASTG 2 cut(s) 420, 1506
Vha464I CTTAAG 1 cut(s) 752
VpaK11BI GGWCC 3 cut(s) 469, 808, 874
XapI RAATTY 5 cut(s) 61, 352, 974, 1196, 1487
XceI RCATGY 5 cut(s) 212, 218, 224, 920, 1305
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 1 cut(s) 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.