MD17G1012300.v1.1

SWI SNF complex component SNF12 homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
1096804 .. 1099818
3015 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1012300.v1.1.491

Sequence Viewer

Length: 1635 bp
ATGTCTATGAACAATAATAACCCACCTAAGAGTCTCGGAGCCTCTTCGTCGCCCTTTGGCAATATCGGTATGGGAGGGCAATCTATGTCTGCAAACCCAGCATTTCAACAATCACAAGCCCAAACACAGATTGGCGCTGGTTACCAAGGTCAGTTTCAGTTCTCTCAAGCGCAGGCTATTGCCCAGGCTCAGTCAAAAGCCCATGCACATGCCCAAGCTCAAGTGGTTAACGCTCAATTCCAAGCTCAGTTGCAAGCTCAGGCGATGGCCCTTAACCAGAACCAAGCAGTTGGCATTGCGAATTTGGGGTCGTCTTCACCCTCCTTTTCCACACCTGGGAATGGCAGTGCCAAGCGCTACCCCCAAAAACCACCAGTACGCCCTTCTGGTGTTTCTCCTACACACATGATGTCACCTGTGAGAACCATGGAACTCAACCCCGCTGCTCGTAAAAAGAAGCAGAAGCTTCCCGATAAACTGCTACAAGACAAAGTAGCCACCATTCTGCCTGAATCTGCTCTCTACACCCAGCTTCTCGAGTTTGAGGCTCGTGTTGATGCTGCCCTCGCAAGAAAGAAAGTAGACATCCAAGAGGCCCTTAAAAGCCCGCCTTGCATTCAGAAAACGATGCGGATTTATGTTTTTAACACTTTTGCTAATCAGGTTCGCTCGATTCCACAGAAGCCAAATGCTGATCCCCCCACTTGGACACTTAAAATAGTTGGGAGGATCTTGGAAGATGGGGTTGATCCTGACCAGCCTGGAATGGTCCAGAAATCAAATCCCTTTTATCCAAAGTTCTCATCTTTCTTCAAGAGAGTAACAATTTCTTTGGATCAGAGACTATATCCTGAGAATCATATCATTTTGTGGGAAAATGCTAGATCGCCTGCAATTCATGAGGGCTTCGAGGTGAAGAGAAAAGGTGACAAAGAATTTACTGTGAACATACGGTTGGAAATGAATTATGCGCCTGAGAAGTATAAGCTTTCTCAACCATTGATGGAAGTTCTTGGTATTGAGGTTGAAACCCGACCTAGGATTATAGCTTCAATCTGGCACTATGTGAAGGCTAGGAAATTGCAGAACCAGCATGATCCTTCTTTCTTTAACTGTGATCCACCACTTCAAAAAGTATTTGGGGAAGAAAAGATGAAATTCACCATGGTATCGCAGAAGATATCTCAGCATTTGTTCCCCCCGCAACCTATTCATTTGGAGCATAAGATAAAGCTTTCAGGAAATAGTCCAGCTGGAACTGCATGTTATGATGTGTTGGTTGACGTTCCTTTTCCAATTCAAAGGGAACTGTCTGCTCTTTTGGCCAACTCCGAGAAGAACAAAGAGATTGATACCTGTGATGAAGCAATATGTGCAGCTATAAGAAAAATCCATGAGCATCGTCGCAGGCGAGCTTTTTTCCTTGGGTTTAGTCAATCTCCTGTAGAATTTATCAATGCACTGATTGAATCTCAAAACAAAGATTTAAAGCTTGTAGCTGGAGTAGCAAGCCGTAGTGCTGAAAAAGAGAGGCGATCAGATTTCTTCCACCAACCATGGGTCGAAGATGCTGTTATCCGGTATCTGAATCGTAAGCCAGGTGCAGGAGGTGATGCTGCTCCTGGAAGCATATGA

Protein Analysis

545

Amino Acids

60.6

Weight (kDa)

9.55

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIB PF02201 326 - 398 2.8e-23 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 582
AciI CCGC 4 cut(s) 441, 608, 631, 1202
AclWI GGATC 6 cut(s) 689, 737, 743, 843, 1091, 1112
AcoI YGGCCR 1 cut(s) 1323
AcsI RAATTY 4 cut(s) 301, 935, 1157, 1448
AdeI CACNNNGTG 1 cut(s) 1066
AfaI GTAC 1 cut(s) 378
AfeI AGCGCT 1 cut(s) 356
AfiI CCNNNNNNNGG 6 cut(s) 336, 341, 705, 1038, 1558, 1604
AgsI TTSAA 7 cut(s) 107, 814, 1028, 1053, 1130, 1301, 1469
AjnI CCWGG 5 cut(s) 183, 334, 760, 1597, 1621
AjuI GAANNNNNNNTTGG 4 cut(s) 138, 170, 938, 970
Alw26I GTCTC 2 cut(s) 38, 835
AlwI GGATC 6 cut(s) 689, 737, 743, 843, 1091, 1112
Ama87I CYCGRG 1 cut(s) 536
Aor51HI AGCGCT 1 cut(s) 356
AoxI GGCC 3 cut(s) 267, 594, 1323
ApeKI GCWGC 4 cut(s) 443, 560, 1376, 1616
ApoI RAATTY 4 cut(s) 301, 935, 1157, 1448
ArsI GACNNNNNNTTYG 2 cut(s) 293, 325
AspA2I CCTAGG 1 cut(s) 1037
AspLEI GCGC 4 cut(s) 137, 172, 357, 973
AspS9I GGNCC 3 cut(s) 268, 595, 769
AsuHPI GGTGA 6 cut(s) 309, 405, 925, 938, 1153, 1622
AvaI CYCGRG 1 cut(s) 536
AvaII GGWCC 1 cut(s) 769
AvrII CCTAGG 1 cut(s) 1037
BaeI ACNNNNGTAYC 2 cut(s) 1152, 1185
BalI TGGCCA 1 cut(s) 1325
BauI CACGAG 1 cut(s) 549
BbsI GAAGAC 1 cut(s) 306
BbvI GCAGC 4 cut(s) 430, 547, 1388, 1603
BccI CCATC 3 cut(s) 259, 734, 997
BceAI ACGGC 1 cut(s) 1497
BciT130I CCWGG 5 cut(s) 185, 336, 762, 1599, 1623
BcoDI GTCTC 2 cut(s) 38, 835
BfaI CTAG 3 cut(s) 882, 1038, 1074
BfmI CTRYAG 1 cut(s) 1443
BfoI RGCGCY 2 cut(s) 138, 358
BisI GCNGC 4 cut(s) 444, 561, 1377, 1617
BlnI CCTAGG 1 cut(s) 1037
BlsI GCNGC 4 cut(s) 445, 562, 1378, 1618
Bme1390I CCNGG 5 cut(s) 185, 336, 762, 1599, 1623
Bme18I GGWCC 1 cut(s) 769
BmeT110I CYCGRG 1 cut(s) 536
BmgT120I GGNCC 3 cut(s) 268, 595, 769
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 5 cut(s) 185, 336, 762, 1599, 1623
BmsI GCATC 5 cut(s) 547, 618, 1408, 1558, 1603
BpiI GAAGAC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 1521
Bpu10I CCTNAGC 1 cut(s) 258
BpuEI CTTGAG 2 cut(s) 150, 204
BsaJI CCNNGG 8 cut(s) 145, 183, 335, 426, 1037, 1164, 1423, 1556
BsaWI WCCGGW 1 cut(s) 1578
Bsc4I CCNNNNNNNGG 6 cut(s) 336, 341, 705, 1038, 1558, 1604
Bse1I ACTGG 1 cut(s) 374
Bse3DI GCAATG 1 cut(s) 294
BseBI CCWGG 5 cut(s) 185, 336, 762, 1599, 1623
BseDI CCNNGG 8 cut(s) 145, 183, 335, 426, 1037, 1164, 1423, 1556
BseGI GGATG 1 cut(s) 585
BseLI CCNNNNNNNGG 6 cut(s) 336, 341, 705, 1038, 1558, 1604
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 6 cut(s) 203, 260, 272, 843, 966, 1199
BseNI ACTGG 1 cut(s) 374
BseXI GCAGC 4 cut(s) 430, 547, 1388, 1603
BseYI CCCAGC 2 cut(s) 97, 528
BsgI GTGCAG 2 cut(s) 1395, 1623
BshFI GGCC 3 cut(s) 269, 596, 1325
BsiHKCI CYCGRG 1 cut(s) 536
BsiSI CCGG 1 cut(s) 1579
BslI CCNNNNNNNGG 6 cut(s) 336, 341, 705, 1038, 1558, 1604
BsmAI GTCTC 2 cut(s) 38, 835
BsmI GAATGC 1 cut(s) 615
BsnI GGCC 3 cut(s) 269, 596, 1325
BsoBI CYCGRG 1 cut(s) 536
Bsp143I GATC 8 cut(s) 694, 729, 748, 835, 884, 1096, 1117, 1535
Bsp19I CCATGG 3 cut(s) 426, 1164, 1556
BspACI CCGC 4 cut(s) 441, 608, 631, 1202
BspANI GGCC 3 cut(s) 269, 596, 1325
BspCNI CTCAG 6 cut(s) 202, 259, 271, 844, 967, 1198
BspHI TCATGA 1 cut(s) 898
BspLI GGNNCC 1 cut(s) 40
BspPI GGATC 6 cut(s) 689, 737, 743, 843, 1091, 1112
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 1 cut(s) 374
BssECI CCNNGG 8 cut(s) 145, 183, 335, 426, 1037, 1164, 1423, 1556
BssMI GATC 8 cut(s) 694, 729, 748, 835, 884, 1096, 1117, 1535
BssSI CACGAG 1 cut(s) 549
BssT1I CCWWGG 6 cut(s) 145, 426, 1037, 1164, 1423, 1556
Bst2BI CACGAG 1 cut(s) 549
Bst2UI CCWGG 5 cut(s) 185, 336, 762, 1599, 1623
Bst4CI ACNGT 4 cut(s) 943, 954, 1115, 1311
Bst6I CTCTTC 2 cut(s) 49, 911
BstAPI GCANNNNNTGC 1 cut(s) 1373
BstC8I GCNNGC 7 cut(s) 174, 255, 608, 891, 1409, 1413, 1510
BstDEI CTNAG 7 cut(s) 27, 189, 246, 258, 852, 975, 1185
BstDSI CCRYGG 3 cut(s) 426, 1164, 1556
BstEII GGTNACC 1 cut(s) 140
BstF5I GGATG 1 cut(s) 585
BstH2I RGCGCY 2 cut(s) 138, 358
BstHHI GCGC 4 cut(s) 137, 172, 357, 973
BstKTI GATC 8 cut(s) 697, 732, 751, 838, 887, 1099, 1120, 1538
BstMAI GTCTC 2 cut(s) 38, 835
BstMBI GATC 8 cut(s) 694, 729, 748, 835, 884, 1096, 1117, 1535
BstMWI GCNNNNNNNGC 8 cut(s) 98, 566, 612, 1090, 1259, 1322, 1373, 1505
BstNI CCWGG 5 cut(s) 185, 336, 762, 1599, 1623
BstNSI RCATGY 2 cut(s) 212, 1266
BstPI GGTNACC 1 cut(s) 140
BstSCI CCNGG 5 cut(s) 183, 334, 760, 1597, 1621
BstSFI CTRYAG 1 cut(s) 1443
BstV1I GCAGC 4 cut(s) 430, 547, 1388, 1603
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 729
BstXI CCANNNNNNTGG 1 cut(s) 290
BstYI RGATCY 1 cut(s) 729
BsuRI GGCC 3 cut(s) 269, 596, 1325
BtgI CCRYGG 3 cut(s) 426, 1164, 1556
BtgZI GCGATG 1 cut(s) 278
BtsCI GGATG 1 cut(s) 585
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 2 cut(s) 352, 1460
Cac8I GCNNGC 7 cut(s) 174, 255, 608, 891, 1409, 1413, 1510
CciI TCATGA 1 cut(s) 898
CfoI GCGC 4 cut(s) 137, 172, 357, 973
Cfr13I GGNCC 3 cut(s) 268, 595, 769
Csp6I GTAC 1 cut(s) 377
CviQI GTAC 1 cut(s) 377
DdeI CTNAG 7 cut(s) 27, 189, 246, 258, 852, 975, 1185
DpnI GATC 8 cut(s) 696, 731, 750, 837, 886, 1098, 1119, 1537
DpnII GATC 8 cut(s) 694, 729, 748, 835, 884, 1096, 1117, 1535
DraI TTTAAA 1 cut(s) 1488
DraIII CACNNNGTG 1 cut(s) 1066
EaeI YGGCCR 1 cut(s) 1323
Eam1104I CTCTTC 2 cut(s) 49, 911
EarI CTCTTC 2 cut(s) 49, 911
Eco130I CCWWGG 6 cut(s) 145, 426, 1037, 1164, 1423, 1556
Eco32I GATATC 1 cut(s) 1182
Eco47I GGWCC 1 cut(s) 769
Eco47III AGCGCT 1 cut(s) 356
Eco88I CYCGRG 1 cut(s) 536
Eco91I GGTNACC 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 595
EcoO65I GGTNACC 1 cut(s) 140
EcoRII CCWGG 5 cut(s) 183, 334, 760, 1597, 1621
EcoRV GATATC 1 cut(s) 1182
EcoT14I CCWWGG 6 cut(s) 145, 426, 1037, 1164, 1423, 1556
ErhI CCWWGG 6 cut(s) 145, 426, 1037, 1164, 1423, 1556
FalI AAGNNNNNCTT 4 cut(s) 582, 614, 595, 627
FauI CCCGC 3 cut(s) 448, 615, 1209
FauNDI CATATG 1 cut(s) 1631
FblI GTMKAC 1 cut(s) 582
Fnu4HI GCNGC 4 cut(s) 444, 561, 1377, 1617
FokI GGATG 1 cut(s) 572
Fsp4HI GCNGC 4 cut(s) 444, 561, 1377, 1617
FspBI CTAG 3 cut(s) 882, 1038, 1074
GlaI GCGC 4 cut(s) 136, 171, 356, 972
GluI GCNGC 4 cut(s) 444, 561, 1377, 1617
GsaI CCCAGC 2 cut(s) 101, 532
GsuI CTGGAG 1 cut(s) 1521
HaeII RGCGCY 2 cut(s) 138, 358
HaeIII GGCC 3 cut(s) 269, 596, 1325
HapII CCGG 1 cut(s) 1579
HhaI GCGC 4 cut(s) 137, 172, 357, 973
Hin6I GCGC 4 cut(s) 135, 170, 355, 971
HinP1I GCGC 4 cut(s) 135, 170, 355, 971
HincII GTYRAC 2 cut(s) 229, 1282
HindII GTYRAC 2 cut(s) 229, 1282
HindIII AAGCTT 4 cut(s) 464, 986, 1232, 1490
HinfI GANTC 6 cut(s) 31, 512, 673, 856, 1469, 1588
HpaI GTTAAC 1 cut(s) 229
HpaII CCGG 1 cut(s) 1579
HphI GGTGA 6 cut(s) 309, 405, 925, 938, 1153, 1622
Hpy166II GTNNAC 4 cut(s) 229, 583, 946, 1282
Hpy188I TCNGA 6 cut(s) 38, 621, 840, 1333, 1540, 1587
Hpy188III TCNNGA 8 cut(s) 470, 536, 752, 772, 814, 851, 899, 1239
Hpy8I GTNNAC 4 cut(s) 229, 583, 946, 1282
Hpy99I CGWCG 2 cut(s) 52, 1407
HpyAV CCTTC 3 cut(s) 393, 1063, 1110
HpyCH4III ACNGT 4 cut(s) 943, 954, 1115, 1311
HpyCH4IV ACGT 1 cut(s) 1284
HpyF10VI GCNNNNNNNGC 8 cut(s) 98, 566, 612, 1090, 1259, 1322, 1373, 1505
HpyF3I CTNAG 7 cut(s) 27, 189, 246, 258, 852, 975, 1185
HpySE526I ACGT 1 cut(s) 1284
HspAI GCGC 4 cut(s) 135, 170, 355, 971
KspAI GTTAAC 1 cut(s) 229
Kzo9I GATC 8 cut(s) 694, 729, 748, 835, 884, 1096, 1117, 1535
LmnI GCTCC 3 cut(s) 38, 1219, 1624
Lsp1109I GCAGC 4 cut(s) 430, 547, 1388, 1603
LweI GCATC 5 cut(s) 547, 618, 1408, 1558, 1603
MaeI CTAG 3 cut(s) 882, 1038, 1074
MaeII ACGT 1 cut(s) 1284
MaeIII GTNAC 4 cut(s) 140, 411, 820, 926
MalI GATC 8 cut(s) 696, 731, 750, 837, 886, 1098, 1119, 1537
MboI GATC 8 cut(s) 694, 729, 748, 835, 884, 1096, 1117, 1535
MflI RGATCY 1 cut(s) 729
MlsI TGGCCA 1 cut(s) 1325
MluNI TGGCCA 1 cut(s) 1325
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 936
Mox20I TGGCCA 1 cut(s) 1325
MscI TGGCCA 1 cut(s) 1325
MseI TTAA 7 cut(s) 228, 273, 600, 645, 714, 1110, 1487
MslI CAYNNNNRTG 1 cut(s) 207
Msp20I TGGCCA 1 cut(s) 1325
MspA1I CMGCKG 2 cut(s) 443, 1253
MspI CCGG 1 cut(s) 1579
MspR9I CCNGG 5 cut(s) 185, 336, 762, 1599, 1623
Mva1269I GAATGC 1 cut(s) 615
MvaI CCWGG 5 cut(s) 185, 336, 762, 1599, 1623
MwoI GCNNNNNNNGC 8 cut(s) 98, 566, 612, 1090, 1259, 1322, 1373, 1505
NcoI CCATGG 3 cut(s) 426, 1164, 1556
NdeI CATATG 1 cut(s) 1631
NdeII GATC 8 cut(s) 694, 729, 748, 835, 884, 1096, 1117, 1535
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 2 cut(s) 411, 926
NspI RCATGY 2 cut(s) 212, 1266
PaeR7I CTCGAG 1 cut(s) 536
PagI TCATGA 1 cut(s) 898
PcsI WCGNNNNNNNCGW 1 cut(s) 1408
PctI GAATGC 1 cut(s) 615
PfeI GAWTC 5 cut(s) 512, 673, 856, 1469, 1588
PfoI TCCNGGA 1 cut(s) 1621
PkrI GCNGC 4 cut(s) 445, 562, 1378, 1618
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
Psp6I CCWGG 5 cut(s) 183, 334, 760, 1597, 1621
PspEI GGTNACC 1 cut(s) 140
PspFI CCCAGC 2 cut(s) 97, 528
PspGI CCWGG 5 cut(s) 183, 334, 760, 1597, 1621
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 3 cut(s) 268, 595, 769
PsuI RGATCY 1 cut(s) 729
PvuII CAGCTG 1 cut(s) 1253
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
RseI CAYNNNNRTG 1 cut(s) 207
SaqAI TTAA 7 cut(s) 228, 273, 600, 645, 714, 1110, 1487
SatI GCNGC 4 cut(s) 444, 561, 1377, 1617
Sau3AI GATC 8 cut(s) 694, 729, 748, 835, 884, 1096, 1117, 1535
Sau96I GGNCC 3 cut(s) 268, 595, 769
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 5 cut(s) 185, 336, 762, 1599, 1623
SfaNI GCATC 5 cut(s) 547, 618, 1408, 1558, 1603
SfcI CTRYAG 1 cut(s) 1443
Sfr274I CTCGAG 1 cut(s) 536
SinI GGWCC 1 cut(s) 769
SlaI CTCGAG 1 cut(s) 536
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 3 cut(s) 165, 219, 536
SmoI CTYRAG 3 cut(s) 165, 219, 536
SsiI CCGC 4 cut(s) 441, 608, 631, 1202
SspMI CTAG 3 cut(s) 882, 1038, 1074
StyD4I CCNGG 5 cut(s) 183, 334, 760, 1597, 1621
StyI CCWWGG 6 cut(s) 145, 426, 1037, 1164, 1423, 1556
TaaI ACNGT 4 cut(s) 943, 954, 1115, 1311
TaiI ACGT 1 cut(s) 1287
TaqI TCGA 4 cut(s) 537, 671, 909, 1563
TfiI GAWTC 5 cut(s) 512, 673, 856, 1469, 1588
Tru1I TTAA 7 cut(s) 228, 273, 600, 645, 714, 1110, 1487
Tru9I TTAA 7 cut(s) 228, 273, 600, 645, 714, 1110, 1487
TscAI CASTG 2 cut(s) 352, 1467
TseFI GTSAC 2 cut(s) 411, 926
TseI GCWGC 4 cut(s) 443, 560, 1376, 1616
Tsp45I GTSAC 2 cut(s) 411, 926
TspDTI ATGAA 6 cut(s) 23, 887, 977, 1169, 1202, 1377
TspRI CASTG 2 cut(s) 352, 1467
VpaK11BI GGWCC 1 cut(s) 769
XapI RAATTY 4 cut(s) 301, 935, 1157, 1448
XceI RCATGY 2 cut(s) 212, 1266
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XhoI CTCGAG 1 cut(s) 536
XmaJI CCTAGG 1 cut(s) 1037
XmiI GTMKAC 1 cut(s) 582
XspI CTAG 3 cut(s) 882, 1038, 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.