Rmu_sc0003302.1_g000001

SWI SNF complex component SNF12 homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003302.1
Physical Location & Seq
Forward (+)
28 .. 2157
2130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003302.1_g000001.1.cds

Sequence Viewer

Length: 1596 bp
atggtggccccatctatgtctgcaaacccttcgtttccgcaatcacaggctcaagcacaacttggggctggttttcaagcacaatttcagctctctcaagcccaggcgattgcgcaagctcagtcaaaagctcaagcacatgcacatgcgcaagcacaggctcaagctcaagcacatcatgcccaggctcaggctcaagcggctcacgcccaattccaggctcagttacaggctcaggcgatgtcccttaaccagaaccaagcaggttccatggggaattcaccctcatattccacacccggaagtggaagtgtgaagcgcttccctcaaaaacctccagtgcgccctcctggtctttctcctccaaacatgatctcaccgattagaaccatggacctctcagctgctaatcgtaaaaagaagcagaagcttcccgacaaacagctacaggacaaagtagccaccatattgcctgaatctgctctatacacccagcttcttgagtttgaggctcgtgttgatgctgcgcttacaagaaagaaagttgacatccaagaggctctgaaaagccccccttccattcagaaaacacttcgcatttatgtttttaacacttttgccaatcaggttcgctcaattccacagaagccaaatgctgagccccctacttggacgcttaagatagttggaaggatcttggaagatgggattgaccccgatcagcctggagtggtccagaaatcaaatcccttttacccaaagttttcatctttcttcaagagagtgaccatttctttggaccagaggctgtatcctgataatcatatcattaactgggaacattcaaggtcacctgcaccacaggagggatttgaggtaaagagaaaaggggacaaagaatttactgtgaatatacgcttggaaatgaattatgcgcctgagaagtttaagctttcacaacctctgatggaagttcttggtattgaggtggaaactcgtccaaggataatagcttcaatctggcactatgtgaaggctaggaaattgcagaacccaaatgacccctctttctttaactgtgatccacctcttcaaaaagtattcggagaggaaaagatgaaattcactatggtgtcccagaagatatctcagcacttgtttcccccacaacctatacatttggagcataagatgaggctttctgggaatagtccagctggaacagcatgttatgatgtgttggtagatgtaccttttccaattcaaagggaattatctactctattggccaattcggagaaaaacaaagaaattgacgcctgtgatgaagcgatatgtggagctatcagaaaaatccacgagcatcgtcgcaggcgagcttttttccttggatttagtcaatcacctgttgaattcatcaatgcactgattgaatctcaaagcaaggatttaaagcttgtagctggagtagcaagccgtagtgctgagaaagagcgccggtcagatttcttccatcaaccatgggttgaagatgctgttatccgctatttgaatcggaagccagttgcaggaagtgatcatcctggaagcacatga

Protein Analysis

531

Amino Acids

59.38

Weight (kDa)

9.58

Isoelectric Point (pI)

58.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 862
Acc16I TGCGCA 2 cut(s) 114, 150
Acc36I ACCTGC 2 cut(s) 254, 862
AciI CCGC 3 cut(s) 38, 200, 1543
AclWI GGATC 2 cut(s) 701, 1076
AcoI YGGCCR 1 cut(s) 1287
AcsI RAATTY 4 cut(s) 277, 899, 1121, 1412
AcyI GRCGYC 1 cut(s) 1317
AdeI CACNNNGTG 1 cut(s) 1030
AfaI GTAC 1 cut(s) 1251
AfeI AGCGCT 1 cut(s) 320
AfiI CCNNNNNNNGG 6 cut(s) 190, 217, 305, 669, 866, 1568
AflII CTTAAG 1 cut(s) 677
AjnI CCWGG 6 cut(s) 102, 183, 216, 349, 724, 1582
AjuI GAANNNNNNNTTGG 2 cut(s) 902, 934
AleI CACNNNNGTG 1 cut(s) 1130
AlwI GGATC 2 cut(s) 701, 1076
AlwNI CAGNNNCTG 1 cut(s) 808
Aor51HI AGCGCT 1 cut(s) 320
AoxI GGCC 2 cut(s) 6, 1287
ApeKI GCWGC 2 cut(s) 404, 524
ApoI RAATTY 4 cut(s) 277, 899, 1121, 1412
ArsI GACNNNNNNTTYG 2 cut(s) 778, 810
Asp700I GAANNNNTTC 1 cut(s) 320
AspLEI GCGC 7 cut(s) 115, 151, 321, 345, 529, 937, 1497
AspS9I GGNCC 4 cut(s) 7, 394, 733, 799
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 4 cut(s) 273, 369, 843, 1395
AvaII GGWCC 3 cut(s) 394, 733, 799
BalI TGGCCA 1 cut(s) 1289
BanII GRGCYC 1 cut(s) 663
BauI CACGAG 2 cut(s) 513, 1358
BbvI GCAGC 2 cut(s) 391, 511
BccI CCATC 4 cut(s) 19, 698, 961, 1521
BceAI ACGGC 1 cut(s) 1461
BcgI CGANNNNNNTGC 2 cut(s) 12, 46
BciT130I CCWGG 6 cut(s) 104, 185, 218, 351, 726, 1584
BciVI GTATCC 1 cut(s) 822
BclI TGATCA 1 cut(s) 1576
BcnI CCSGG 1 cut(s) 300
BfaI CTAG 1 cut(s) 1038
BfmI CTRYAG 1 cut(s) 446
BfoI RGCGCY 2 cut(s) 322, 1498
BfrI CTTAAG 1 cut(s) 677
BfuAI ACCTGC 2 cut(s) 254, 862
BfuI GTATCC 1 cut(s) 822
BisI GCNGC 3 cut(s) 201, 405, 525
BlpI GCTNAGC 1 cut(s) 657
BlsI GCNGC 3 cut(s) 202, 406, 526
Bme1390I CCNGG 7 cut(s) 104, 185, 218, 300, 351, 726, 1584
Bme18I GGWCC 3 cut(s) 394, 733, 799
BmgT120I GGNCC 4 cut(s) 7, 394, 733, 799
BmiI GGNNCC 2 cut(s) 9, 268
BmrFI CCNGG 7 cut(s) 104, 185, 218, 300, 351, 726, 1584
BmrI ACTGGG 1 cut(s) 844
BmsI GCATC 3 cut(s) 511, 1372, 1522
BmuI ACTGGG 1 cut(s) 844
BpmI CTGGAG 3 cut(s) 321, 747, 1485
Bpu10I CCTNAGC 2 cut(s) 189, 234
Bpu1102I GCTNAGC 1 cut(s) 657
BpuEI CTTGAG 7 cut(s) 36, 81, 117, 147, 153, 180, 521
BpuMI CCSGG 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 1317
BsaJI CCNNGG 7 cut(s) 102, 183, 270, 390, 1001, 1387, 1520
Bsc4I CCNNNNNNNGG 6 cut(s) 190, 217, 305, 669, 866, 1568
Bse118I RCCGGY 1 cut(s) 1497
Bse1I ACTGG 3 cut(s) 338, 839, 1562
BseBI CCWGG 6 cut(s) 104, 185, 218, 351, 726, 1584
BseDI CCNNGG 7 cut(s) 102, 183, 270, 390, 1001, 1387, 1520
BseGI GGATG 2 cut(s) 549, 1579
BseLI CCNNNNNNNGG 6 cut(s) 190, 217, 305, 669, 866, 1568
BseMII CTCAG 9 cut(s) 134, 203, 236, 248, 414, 648, 930, 1163, 1476
BseNI ACTGG 3 cut(s) 338, 839, 1562
BseRI GAGGAG 1 cut(s) 351
BseXI GCAGC 2 cut(s) 391, 511
BseYI CCCAGC 1 cut(s) 492
BsgI GTGCAG 1 cut(s) 840
BshFI GGCC 2 cut(s) 8, 1289
BsiSI CCGG 2 cut(s) 300, 1498
BslFI GGGAC 3 cut(s) 229, 905, 1120
BslI CCNNNNNNNGG 6 cut(s) 190, 217, 305, 669, 866, 1568
BsmFI GGGAC 3 cut(s) 229, 905, 1120
BsnI GGCC 2 cut(s) 8, 1289
Bsp1286I GDGCHC 1 cut(s) 663
Bsp143I GATC 5 cut(s) 372, 693, 718, 1081, 1576
Bsp1720I GCTNAGC 1 cut(s) 657
Bsp19I CCATGG 3 cut(s) 270, 390, 1520
BspACI CCGC 3 cut(s) 38, 200, 1543
BspANI GGCC 2 cut(s) 8, 1289
BspCNI CTCAG 9 cut(s) 133, 202, 235, 247, 413, 649, 931, 1162, 1477
BspLI GGNNCC 2 cut(s) 9, 268
BspMI ACCTGC 2 cut(s) 254, 862
BspPI GGATC 2 cut(s) 701, 1076
BspTI CTTAAG 1 cut(s) 677
BsrFI RCCGGY 1 cut(s) 1497
BsrI ACTGG 3 cut(s) 338, 839, 1562
BssAI RCCGGY 1 cut(s) 1497
BssECI CCNNGG 7 cut(s) 102, 183, 270, 390, 1001, 1387, 1520
BssMI GATC 5 cut(s) 372, 693, 718, 1081, 1576
BssNI GRCGYC 1 cut(s) 1317
BssSI CACGAG 2 cut(s) 513, 1358
BssT1I CCWWGG 5 cut(s) 270, 390, 1001, 1387, 1520
Bst2BI CACGAG 2 cut(s) 513, 1358
Bst2UI CCWGG 6 cut(s) 104, 185, 218, 351, 726, 1584
Bst4CI ACNGT 2 cut(s) 907, 1079
Bst6I CTCTTC 1 cut(s) 1095
BstACI GRCGYC 1 cut(s) 1317
BstAFI CTTAAG 1 cut(s) 677
BstAPI GCANNNNNTGC 1 cut(s) 179
BstC8I GCNNGC 5 cut(s) 117, 153, 1373, 1377, 1474
BstDEI CTNAG 9 cut(s) 120, 189, 222, 234, 400, 657, 939, 1149, 1485
BstDSI CCRYGG 3 cut(s) 270, 390, 1520
BstEII GGTNACC 1 cut(s) 849
BstF5I GGATG 2 cut(s) 549, 1579
BstH2I RGCGCY 2 cut(s) 322, 1498
BstHHI GCGC 7 cut(s) 115, 151, 321, 345, 529, 937, 1497
BstKTI GATC 5 cut(s) 375, 696, 721, 1084, 1579
BstMBI GATC 5 cut(s) 372, 693, 718, 1081, 1576
BstMWI GCNNNNNNNGC 5 cut(s) 179, 200, 206, 1223, 1469
BstNI CCWGG 6 cut(s) 104, 185, 218, 351, 726, 1584
BstNSI RCATGY 3 cut(s) 143, 149, 1230
BstPI GGTNACC 1 cut(s) 849
BstSCI CCNGG 7 cut(s) 102, 183, 216, 298, 349, 724, 1582
BstSFI CTRYAG 1 cut(s) 446
BstV1I GCAGC 2 cut(s) 391, 511
BstX2I RGATCY 1 cut(s) 693
BstXI CCANNNNNNTGG 1 cut(s) 796
BstYI RGATCY 1 cut(s) 693
BsuI GTATCC 1 cut(s) 822
BsuRI GGCC 2 cut(s) 8, 1289
BtgI CCRYGG 3 cut(s) 270, 390, 1520
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 2 cut(s) 549, 1579
BtsIMutI CAGTG 2 cut(s) 345, 1424
BveI ACCTGC 2 cut(s) 254, 862
Cac8I GCNNGC 5 cut(s) 117, 153, 1373, 1377, 1474
CaiI CAGNNNCTG 1 cut(s) 808
CfoI GCGC 7 cut(s) 115, 151, 321, 345, 529, 937, 1497
Cfr10I RCCGGY 1 cut(s) 1497
Cfr13I GGNCC 4 cut(s) 7, 394, 733, 799
CseI GACGC 2 cut(s) 682, 1325
Csp6I GTAC 1 cut(s) 1250
CviAII CATG 9 cut(s) 140, 146, 179, 271, 370, 391, 1227, 1521, 1593
CviQI GTAC 1 cut(s) 1250
DdeI CTNAG 9 cut(s) 120, 189, 222, 234, 400, 657, 939, 1149, 1485
DpnI GATC 5 cut(s) 374, 695, 720, 1083, 1578
DpnII GATC 5 cut(s) 372, 693, 718, 1081, 1576
DraI TTTAAA 1 cut(s) 1452
DraIII CACNNNGTG 1 cut(s) 1030
EaeI YGGCCR 1 cut(s) 1287
Eam1104I CTCTTC 1 cut(s) 1095
EarI CTCTTC 1 cut(s) 1095
Eco130I CCWWGG 5 cut(s) 270, 390, 1001, 1387, 1520
Eco24I GRGCYC 1 cut(s) 663
Eco32I GATATC 1 cut(s) 1146
Eco47I GGWCC 3 cut(s) 394, 733, 799
Eco47III AGCGCT 1 cut(s) 320
Eco91I GGTNACC 1 cut(s) 849
EcoO65I GGTNACC 1 cut(s) 849
EcoRI GAATTC 2 cut(s) 277, 1412
EcoRII CCWGG 6 cut(s) 102, 183, 216, 349, 724, 1582
EcoRV GATATC 1 cut(s) 1146
EcoT14I CCWWGG 5 cut(s) 270, 390, 1001, 1387, 1520
EcoT38I GRGCYC 1 cut(s) 663
ErhI CCWWGG 5 cut(s) 270, 390, 1001, 1387, 1520
FaeI CATG 9 cut(s) 143, 149, 182, 274, 373, 394, 1230, 1524, 1596
FalI AAGNNNNNCTT 4 cut(s) 45, 77, 559, 591
FaqI GGGAC 3 cut(s) 229, 905, 1120
FatI CATG 9 cut(s) 139, 145, 178, 270, 369, 390, 1226, 1520, 1592
FbaI TGATCA 1 cut(s) 1576
Fnu4HI GCNGC 3 cut(s) 201, 405, 525
FokI GGATG 2 cut(s) 536, 1566
FriOI GRGCYC 1 cut(s) 663
Fsp4HI GCNGC 3 cut(s) 201, 405, 525
FspBI CTAG 1 cut(s) 1038
FspI TGCGCA 2 cut(s) 114, 150
GlaI GCGC 7 cut(s) 114, 150, 320, 344, 528, 936, 1496
GluI GCNGC 3 cut(s) 201, 405, 525
GsaI CCCAGC 1 cut(s) 496
GsuI CTGGAG 3 cut(s) 321, 747, 1485
HaeII RGCGCY 2 cut(s) 322, 1498
HaeIII GGCC 2 cut(s) 8, 1289
HapII CCGG 2 cut(s) 300, 1498
HgaI GACGC 2 cut(s) 682, 1325
HhaI GCGC 7 cut(s) 115, 151, 321, 345, 529, 937, 1497
Hin1I GRCGYC 1 cut(s) 1317
Hin1II CATG 9 cut(s) 143, 149, 182, 274, 373, 394, 1230, 1524, 1596
Hin6I GCGC 7 cut(s) 113, 149, 319, 343, 527, 935, 1495
HinP1I GCGC 7 cut(s) 113, 149, 319, 343, 527, 935, 1495
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 3 cut(s) 428, 950, 1454
HinfI GANTC 3 cut(s) 476, 1433, 1552
HpaII CCGG 2 cut(s) 300, 1498
HphI GGTGA 4 cut(s) 273, 369, 843, 1395
Hpy166II GTNNAC 1 cut(s) 547
Hpy188I TCNGA 8 cut(s) 564, 585, 966, 1106, 1297, 1349, 1504, 1557
Hpy188III TCNNGA 5 cut(s) 434, 500, 736, 778, 815
Hpy8I GTNNAC 1 cut(s) 547
Hpy99I CGWCG 1 cut(s) 1371
HpyAV CCTTC 4 cut(s) 39, 585, 684, 1027
HpyCH4III ACNGT 2 cut(s) 907, 1079
HpyCH4V TGCA 6 cut(s) 23, 143, 857, 1048, 1424, 1568
HpyF10VI GCNNNNNNNGC 5 cut(s) 179, 200, 206, 1223, 1469
HpyF3I CTNAG 9 cut(s) 120, 189, 222, 234, 400, 657, 939, 1149, 1485
Hsp92I GRCGYC 1 cut(s) 1317
Hsp92II CATG 9 cut(s) 143, 149, 182, 274, 373, 394, 1230, 1524, 1596
HspAI GCGC 7 cut(s) 113, 149, 319, 343, 527, 935, 1495
Ksp22I TGATCA 1 cut(s) 1576
Kzo9I GATC 5 cut(s) 372, 693, 718, 1081, 1576
LmnI GCTCC 2 cut(s) 1183, 1340
Lsp1109I GCAGC 2 cut(s) 391, 511
LweI GCATC 3 cut(s) 511, 1372, 1522
MaeI CTAG 1 cut(s) 1038
MaeIII GTNAC 3 cut(s) 225, 784, 849
MalI GATC 5 cut(s) 374, 695, 720, 1083, 1578
MboI GATC 5 cut(s) 372, 693, 718, 1081, 1576
MboII GAAGA 6 cut(s) 713, 766, 1082, 1153, 1501, 1541
MflI RGATCY 1 cut(s) 693
MhlI GDGCHC 1 cut(s) 663
MlsI TGGCCA 1 cut(s) 1289
MluNI TGGCCA 1 cut(s) 1289
MmeI TCCRAC 1 cut(s) 667
Mox20I TGGCCA 1 cut(s) 1289
MroXI GAANNNNTTC 1 cut(s) 320
MscI TGGCCA 1 cut(s) 1289
MseI TTAA 7 cut(s) 249, 609, 678, 831, 948, 1074, 1451
MslI CAYNNNNRTG 2 cut(s) 144, 1130
Msp20I TGGCCA 1 cut(s) 1289
MspA1I CMGCKG 2 cut(s) 404, 1217
MspCI CTTAAG 1 cut(s) 677
MspI CCGG 2 cut(s) 300, 1498
MspR9I CCNGG 7 cut(s) 104, 185, 218, 300, 351, 726, 1584
MvaI CCWGG 6 cut(s) 104, 185, 218, 351, 726, 1584
MwoI GCNNNNNNNGC 5 cut(s) 179, 200, 206, 1223, 1469
NciI CCSGG 1 cut(s) 300
NcoI CCATGG 3 cut(s) 270, 390, 1520
NdeII GATC 5 cut(s) 372, 693, 718, 1081, 1576
NlaIII CATG 9 cut(s) 143, 149, 182, 274, 373, 394, 1230, 1524, 1596
NlaIV GGNNCC 2 cut(s) 9, 268
NmuCI GTSAC 2 cut(s) 784, 849
NsbI TGCGCA 2 cut(s) 114, 150
NspI RCATGY 3 cut(s) 143, 149, 1230
OliI CACNNNNGTG 1 cut(s) 1130
PaqCI CACCTGC 1 cut(s) 862
PcsI WCGNNNNNNNCGW 1 cut(s) 1372
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 3 cut(s) 476, 1433, 1552
PfoI TCCNGGA 1 cut(s) 1582
PkrI GCNGC 3 cut(s) 202, 406, 526
Psp6I CCWGG 6 cut(s) 102, 183, 216, 349, 724, 1582
PspEI GGTNACC 1 cut(s) 849
PspFI CCCAGC 1 cut(s) 492
PspGI CCWGG 6 cut(s) 102, 183, 216, 349, 724, 1582
PspN4I GGNNCC 2 cut(s) 9, 268
PspPI GGNCC 4 cut(s) 7, 394, 733, 799
PstNI CAGNNNCTG 1 cut(s) 808
PsuI RGATCY 1 cut(s) 693
PvuII CAGCTG 2 cut(s) 404, 1217
RsaI GTAC 1 cut(s) 1251
RsaNI GTAC 1 cut(s) 1250
RseI CAYNNNNRTG 2 cut(s) 144, 1130
SaqAI TTAA 7 cut(s) 249, 609, 678, 831, 948, 1074, 1451
SatI GCNGC 3 cut(s) 201, 405, 525
Sau3AI GATC 5 cut(s) 372, 693, 718, 1081, 1576
Sau96I GGNCC 4 cut(s) 7, 394, 733, 799
ScrFI CCNGG 7 cut(s) 104, 185, 218, 300, 351, 726, 1584
SduI GDGCHC 1 cut(s) 663
SfaNI GCATC 3 cut(s) 511, 1372, 1522
SfcI CTRYAG 1 cut(s) 446
SinI GGWCC 3 cut(s) 394, 733, 799
SmiMI CAYNNNNRTG 2 cut(s) 144, 1130
SmlI CTYRAG 8 cut(s) 51, 96, 132, 162, 168, 195, 500, 677
SmoI CTYRAG 8 cut(s) 51, 96, 132, 162, 168, 195, 500, 677
SsiI CCGC 3 cut(s) 38, 200, 1543
SspMI CTAG 1 cut(s) 1038
StyD4I CCNGG 7 cut(s) 102, 183, 216, 298, 349, 724, 1582
StyI CCWWGG 5 cut(s) 270, 390, 1001, 1387, 1520
TaaI ACNGT 2 cut(s) 907, 1079
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 3 cut(s) 476, 1433, 1552
Tru1I TTAA 7 cut(s) 249, 609, 678, 831, 948, 1074, 1451
Tru9I TTAA 7 cut(s) 249, 609, 678, 831, 948, 1074, 1451
TscAI CASTG 2 cut(s) 345, 1431
TseFI GTSAC 2 cut(s) 784, 849
TseI GCWGC 2 cut(s) 404, 524
Tsp45I GTSAC 2 cut(s) 784, 849
TspDTI ATGAA 5 cut(s) 756, 941, 1133, 1341, 1405
TspRI CASTG 2 cut(s) 345, 1431
Vha464I CTTAAG 1 cut(s) 677
VpaK11BI GGWCC 3 cut(s) 394, 733, 799
XapI RAATTY 4 cut(s) 277, 899, 1121, 1412
XceI RCATGY 3 cut(s) 143, 149, 1230
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 1 cut(s) 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.