Prupe.3G305400_v2.0.a1

SWI SNF complex component SNF12 homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
26753630 .. 26756631
3002 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G305400.2

Sequence Viewer

Length: 1638 bp
ATGTCTTTGAACAATAATAATCCATCTAAGAATCTTGGAGCCTCTTCATCGCCCTTTGGCAATGCCGGGATGGTAGCCCAATCTATGCCAACAAACCCTACATTTCCACAATCACAAGCTCAAGCACAAATCGGAGCTGGTTTCCAAGCTCAATTCCAGCTCTCCCAAGCTCAGGCTATTGCCCATGCTCAGTCAAAAGCTCAAGCACATGCCCAAGCTCAAGCTCAACAGGCTCACGCCCAATTCCAAGCTCAGTTACAAGCTCAGGCGCTATCCCTTAACCAGAACCAAGCAGCTGGCATTGGGAATTTAGGGTCGTCTTCACCCTCCTTTTCCACACCTGGAAATGCAAGTCTCAAGCGTTTCCCTCAAAAACCTCCAGTGCGCCCTCCTAGTGTTTCTCCTACAAACATGATGTCACCTATGAGAACCATGGAACTCACACCTGCTGCTCGTAAAAAGAAGCAGAAACTTCCTGATAAACAGCTACAAGACAAAGTAGCCACCATTCTGCCCGAATCTGCTTTGTACACCCAGCTGCTCGAGTTTGAGGCTCGTGTTGATGCTGCTCTTGCGAGAAAGAAAGTTGACATCCAAGAGGCCCTTAAAAGCCCTCCTTGCATTCAGAAAACGCTGCGCATTTATGTTTTTAACACTTTTGCCAATCAGATTCGCACAATTCCAAAGAAGCCAAATGCTGAGCCCCCTACTTGGACTCTGAAGATAGTTGGGAGGATCTTGGAGGATGGTGTTGATCCTGATCAGCCTGGAGTGGTCCAGAAATCAAATCCATTTTATCCGAAGTTCTCATCTTTCTTCAAGAGAGTAACCATTTCTTTGGACCAGAGACTATATCCTGAGAATCATATCATTATGTGGGAAAATGCTAGATCGCCTGCACCACATGAGGGATTTGAGGTGAAGAGAAAAGGGGACAAAGAATTTACTGTGAATATACGCTTGGAAATGAATTATGCACCAGAGAAGTTTAAGCTTTCGCAACCCTTGATGGAAGTTCTTGGTATTGAGGTCGAAACCCGTCCTAGAATAATAGCTTCAATCTGGCACTATGTGAAGGCTAGGAAATTGCAGAACCAAAATGACCCCTCTTTCTTTAACTGTGATCCACCTCTTCAGAAAGTATTCGGGGAAGAAAAGATGAAATTCACCATGGTGTCGCAGAAGATATCTCAGCATTTGTTCCCCCCACAACCTATACATTTGGAACATAAGATAAAGCTTTCAGGGAATAGTCCGGCTGGAACTGCATGTTATGATGTGTTGGTTGACGTGCCCTTTCCAATTCAAAGGGAATTGTCTGCTCTTTTGGCCAACTCAGAGAAGAACAAAGAGATTGATACCTGTGATGAAGCAATATGTGCAGCTATAAGAAAAATCCATGAGCATCGTCGCAGACGAGCTTTTTTCCTTGGGTTTAGTCAATCACCTGTAGAATTTATCAATACATTGATAGAATCTCAAAACAAAGATTTAAAGCTTGTGGCTGGAGTAGCGAGCCGCAGTGCTGAGAAAGAGCGACGATCAGATTTTTTCCACCAACCATGGGTTGAAGATGCTGTTATTCGCTATTTGAACCGTAAGCCAGTTGCAGGAAGTGATGCTCCTGGAAGCATGTGA

Protein Analysis

546

Amino Acids

60.86

Weight (kDa)

9.61

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 454
Acc16I TGCGCA 1 cut(s) 638
Acc36I ACCTGC 1 cut(s) 454
AciI CCGC 1 cut(s) 1519
AclWI GGATC 3 cut(s) 743, 749, 1118
AcoI YGGCCR 1 cut(s) 1329
AcsI RAATTY 4 cut(s) 307, 941, 1163, 1454
AcuI CTGAAG 2 cut(s) 740, 1118
AdeI CACNNNGTG 1 cut(s) 1072
AfaI GTAC 1 cut(s) 530
AfiI CCNNNNNNNGG 5 cut(s) 172, 711, 908, 1564, 1610
AgsI TTSAA 6 cut(s) 10, 820, 1059, 1307, 1571, 1594
AjiI CACGTC 1 cut(s) 1291
AjnI CCWGG 3 cut(s) 340, 766, 1624
AjuI GAANNNNNNNTTGG 2 cut(s) 944, 976
AleI CACNNNNGTG 1 cut(s) 1172
Alw26I GTCTC 2 cut(s) 359, 841
AlwI GGATC 3 cut(s) 743, 749, 1118
Ama87I CYCGRG 1 cut(s) 542
AoxI GGCC 2 cut(s) 600, 1329
ApeKI GCWGC 6 cut(s) 293, 449, 538, 566, 634, 1382
ApoI RAATTY 4 cut(s) 307, 941, 1163, 1454
ArsI GACNNNNNNTTYG 2 cut(s) 401, 433
Asp700I GAANNNNTTC 1 cut(s) 1142
AspLEI GCGC 3 cut(s) 271, 387, 639
AspS9I GGNCC 3 cut(s) 601, 775, 841
AsuC2I CCSGG 1 cut(s) 67
AsuHPI GGTGA 5 cut(s) 315, 411, 931, 1159, 1437
AvaI CYCGRG 1 cut(s) 542
AvaII GGWCC 2 cut(s) 775, 841
BaeGI GKGCMC 1 cut(s) 1296
BalI TGGCCA 1 cut(s) 1331
BanII GRGCYC 1 cut(s) 705
BauI CACGAG 1 cut(s) 555
BbsI GAAGAC 1 cut(s) 312
BbvI GCAGC 6 cut(s) 305, 436, 525, 553, 621, 1394
BccI CCATC 4 cut(s) 31, 64, 740, 1003
BciT130I CCWGG 3 cut(s) 342, 768, 1626
BclI TGATCA 1 cut(s) 760
BcnI CCSGG 1 cut(s) 67
BcoDI GTCTC 2 cut(s) 359, 841
BfaI CTAG 4 cut(s) 393, 888, 1044, 1080
BfmI CTRYAG 1 cut(s) 1449
BfoI RGCGCY 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 454
BisI GCNGC 7 cut(s) 294, 450, 539, 567, 635, 1383, 1519
BlpI GCTNAGC 1 cut(s) 699
BlsI GCNGC 7 cut(s) 295, 451, 540, 568, 636, 1384, 1520
Bme1390I CCNGG 4 cut(s) 67, 342, 768, 1626
Bme18I GGWCC 2 cut(s) 775, 841
BmeT110I CYCGRG 1 cut(s) 542
BmgBI CACGTC 1 cut(s) 1291
BmgT120I GGNCC 3 cut(s) 601, 775, 841
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 4 cut(s) 67, 342, 768, 1626
BmsI GCATC 4 cut(s) 553, 1414, 1564, 1609
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 3 cut(s) 363, 789, 1527
Bpu10I CCTNAGC 2 cut(s) 171, 264
Bpu1102I GCTNAGC 1 cut(s) 699
BpuEI CTTGAG 4 cut(s) 105, 186, 204, 341
BpuMI CCSGG 1 cut(s) 67
BsaBI GATNNNNATC 1 cut(s) 759
BsaJI CCNNGG 4 cut(s) 432, 1170, 1429, 1562
Bsc4I CCNNNNNNNGG 5 cut(s) 172, 711, 908, 1564, 1610
Bse1I ACTGG 2 cut(s) 380, 1604
Bse3DI GCAATG 1 cut(s) 67
Bse8I GATNNNNATC 1 cut(s) 759
BseBI CCWGG 3 cut(s) 342, 768, 1626
BseDI CCNNGG 4 cut(s) 432, 1170, 1429, 1562
BseGI GGATG 3 cut(s) 75, 591, 751
BseJI GATNNNNATC 1 cut(s) 759
BseLI CCNNNNNNNGG 5 cut(s) 172, 711, 908, 1564, 1610
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 9 cut(s) 185, 203, 266, 278, 690, 849, 1205, 1350, 1518
BseNI ACTGG 2 cut(s) 380, 1604
BseSI GKGCMC 1 cut(s) 1296
BseXI GCAGC 6 cut(s) 305, 436, 525, 553, 621, 1394
BseYI CCCAGC 1 cut(s) 534
BsgI GTGCAG 2 cut(s) 882, 1401
BshFI GGCC 2 cut(s) 602, 1331
BsiHKCI CYCGRG 1 cut(s) 542
BsiSI CCGG 2 cut(s) 66, 1256
BslFI GGGAC 1 cut(s) 947
BslI CCNNNNNNNGG 5 cut(s) 172, 711, 908, 1564, 1610
BsmAI GTCTC 2 cut(s) 359, 841
BsmFI GGGAC 1 cut(s) 947
BsmI GAATGC 1 cut(s) 621
BsnI GGCC 2 cut(s) 602, 1331
BsoBI CYCGRG 1 cut(s) 542
Bsp1286I GDGCHC 2 cut(s) 705, 1296
Bsp1407I TGTACA 1 cut(s) 528
Bsp143I GATC 6 cut(s) 735, 754, 760, 890, 1123, 1541
Bsp1720I GCTNAGC 1 cut(s) 699
Bsp19I CCATGG 3 cut(s) 432, 1170, 1562
BspACI CCGC 1 cut(s) 1519
BspANI GGCC 2 cut(s) 602, 1331
BspCNI CTCAG 9 cut(s) 184, 202, 265, 277, 691, 850, 1204, 1349, 1519
BspLI GGNNCC 1 cut(s) 40
BspMI ACCTGC 1 cut(s) 454
BspPI GGATC 3 cut(s) 743, 749, 1118
BsrDI GCAATG 1 cut(s) 67
BsrGI TGTACA 1 cut(s) 528
BsrI ACTGG 2 cut(s) 380, 1604
BssECI CCNNGG 4 cut(s) 432, 1170, 1429, 1562
BssMI GATC 6 cut(s) 735, 754, 760, 890, 1123, 1541
BssSI CACGAG 1 cut(s) 555
BssT1I CCWWGG 4 cut(s) 432, 1170, 1429, 1562
Bst2BI CACGAG 1 cut(s) 555
Bst2UI CCWGG 3 cut(s) 342, 768, 1626
Bst4CI ACNGT 3 cut(s) 949, 1121, 1598
Bst6I CTCTTC 3 cut(s) 49, 917, 1137
BstAPI GCANNNNNTGC 1 cut(s) 1379
BstAUI TGTACA 1 cut(s) 528
BstC8I GCNNGC 3 cut(s) 298, 897, 1516
BstDSI CCRYGG 3 cut(s) 432, 1170, 1562
BstF5I GGATG 3 cut(s) 75, 591, 751
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 3 cut(s) 271, 387, 639
BstKTI GATC 6 cut(s) 738, 757, 763, 893, 1126, 1544
BstMAI GTCTC 2 cut(s) 359, 841
BstMBI GATC 6 cut(s) 735, 754, 760, 890, 1123, 1541
BstMWI GCNNNNNNNGC 7 cut(s) 230, 572, 618, 1265, 1328, 1379, 1511
BstNI CCWGG 3 cut(s) 342, 768, 1626
BstNSI RCATGY 3 cut(s) 212, 1272, 1636
BstSCI CCNGG 4 cut(s) 65, 340, 766, 1624
BstSFI CTRYAG 1 cut(s) 1449
BstSLI GKGCMC 1 cut(s) 1296
BstV1I GCAGC 6 cut(s) 305, 436, 525, 553, 621, 1394
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 735
BstXI CCANNNNNNTGG 2 cut(s) 296, 838
BstYI RGATCY 1 cut(s) 735
BsuRI GGCC 2 cut(s) 602, 1331
BtgI CCRYGG 3 cut(s) 432, 1170, 1562
BtgZI GCGATG 1 cut(s) 33
BtrI CACGTC 1 cut(s) 1291
BtsCI GGATG 3 cut(s) 75, 591, 751
BtsI GCAGTG 1 cut(s) 1528
BtsIMutI CAGTG 2 cut(s) 387, 1528
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 3 cut(s) 298, 897, 1516
CfoI GCGC 3 cut(s) 271, 387, 639
Cfr13I GGNCC 3 cut(s) 601, 775, 841
Csp6I GTAC 1 cut(s) 529
CviQI GTAC 1 cut(s) 529
DpnI GATC 6 cut(s) 737, 756, 762, 892, 1125, 1543
DpnII GATC 6 cut(s) 735, 754, 760, 890, 1123, 1541
DraI TTTAAA 1 cut(s) 1494
DraIII CACNNNGTG 1 cut(s) 1072
EaeI YGGCCR 1 cut(s) 1329
Eam1104I CTCTTC 3 cut(s) 49, 917, 1137
EarI CTCTTC 3 cut(s) 49, 917, 1137
Eco130I CCWWGG 4 cut(s) 432, 1170, 1429, 1562
Eco24I GRGCYC 1 cut(s) 705
Eco32I GATATC 1 cut(s) 1188
Eco47I GGWCC 2 cut(s) 775, 841
Eco57I CTGAAG 2 cut(s) 740, 1118
Eco88I CYCGRG 1 cut(s) 542
EcoO109I RGGNCCY 1 cut(s) 601
EcoRII CCWGG 3 cut(s) 340, 766, 1624
EcoRV GATATC 1 cut(s) 1188
EcoT14I CCWWGG 4 cut(s) 432, 1170, 1429, 1562
EcoT38I GRGCYC 1 cut(s) 705
ErhI CCWWGG 4 cut(s) 432, 1170, 1429, 1562
FalI AAGNNNNNCTT 4 cut(s) 588, 620, 601, 633
FaqI GGGAC 1 cut(s) 947
FbaI TGATCA 1 cut(s) 760
Fnu4HI GCNGC 7 cut(s) 294, 450, 539, 567, 635, 1383, 1519
FokI GGATG 3 cut(s) 82, 578, 758
FriOI GRGCYC 1 cut(s) 705
Fsp4HI GCNGC 7 cut(s) 294, 450, 539, 567, 635, 1383, 1519
FspBI CTAG 4 cut(s) 393, 888, 1044, 1080
FspI TGCGCA 1 cut(s) 638
GlaI GCGC 3 cut(s) 270, 386, 638
GluI GCNGC 7 cut(s) 294, 450, 539, 567, 635, 1383, 1519
GsaI CCCAGC 1 cut(s) 538
GsuI CTGGAG 3 cut(s) 363, 789, 1527
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 2 cut(s) 602, 1331
HapII CCGG 2 cut(s) 66, 1256
HhaI GCGC 3 cut(s) 271, 387, 639
Hin6I GCGC 3 cut(s) 269, 385, 637
HinP1I GCGC 3 cut(s) 269, 385, 637
HincII GTYRAC 2 cut(s) 589, 1288
HindII GTYRAC 2 cut(s) 589, 1288
HindIII AAGCTT 3 cut(s) 992, 1238, 1496
HinfI GANTC 6 cut(s) 31, 518, 670, 715, 862, 1475
HpaII CCGG 2 cut(s) 66, 1256
HphI GGTGA 5 cut(s) 315, 411, 931, 1159, 1437
Hpy166II GTNNAC 3 cut(s) 531, 589, 1288
Hpy188I TCNGA 8 cut(s) 134, 627, 669, 720, 801, 1137, 1339, 1546
Hpy188III TCNNGA 5 cut(s) 476, 758, 778, 820, 857
Hpy8I GTNNAC 3 cut(s) 531, 589, 1288
Hpy99I CGWCG 2 cut(s) 1413, 1542
HpyAV CCTTC 1 cut(s) 1069
HpyCH4III ACNGT 3 cut(s) 949, 1121, 1598
HpyCH4IV ACGT 1 cut(s) 1290
HpyCH4V TGCA 8 cut(s) 350, 621, 899, 977, 1090, 1268, 1382, 1610
HpyF10VI GCNNNNNNNGC 7 cut(s) 230, 572, 618, 1265, 1328, 1379, 1511
HpySE526I ACGT 1 cut(s) 1290
HspAI GCGC 3 cut(s) 269, 385, 637
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 6 cut(s) 735, 754, 760, 890, 1123, 1541
LmnI GCTCC 3 cut(s) 38, 134, 1627
Lsp1109I GCAGC 6 cut(s) 305, 436, 525, 553, 621, 1394
LweI GCATC 4 cut(s) 553, 1414, 1564, 1609
MaeI CTAG 4 cut(s) 393, 888, 1044, 1080
MaeII ACGT 1 cut(s) 1290
MaeIII GTNAC 3 cut(s) 255, 417, 826
MalI GATC 6 cut(s) 737, 756, 762, 892, 1125, 1543
MboI GATC 6 cut(s) 735, 754, 760, 890, 1123, 1541
MflI RGATCY 1 cut(s) 735
MhlI GDGCHC 2 cut(s) 705, 1296
MlsI TGGCCA 1 cut(s) 1331
MluNI TGGCCA 1 cut(s) 1331
MlyI GAGTC 1 cut(s) 709
Mox20I TGGCCA 1 cut(s) 1331
MroXI GAANNNNTTC 1 cut(s) 1142
MscI TGGCCA 1 cut(s) 1331
MseI TTAA 6 cut(s) 279, 606, 651, 990, 1116, 1493
MslI CAYNNNNRTG 1 cut(s) 1172
Msp20I TGGCCA 1 cut(s) 1331
MspA1I CMGCKG 2 cut(s) 296, 538
MspI CCGG 2 cut(s) 66, 1256
MspR9I CCNGG 4 cut(s) 67, 342, 768, 1626
Mva1269I GAATGC 1 cut(s) 621
MvaI CCWGG 3 cut(s) 342, 768, 1626
MwoI GCNNNNNNNGC 7 cut(s) 230, 572, 618, 1265, 1328, 1379, 1511
NciI CCSGG 1 cut(s) 67
NcoI CCATGG 3 cut(s) 432, 1170, 1562
NdeII GATC 6 cut(s) 735, 754, 760, 890, 1123, 1541
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 417
NsbI TGCGCA 1 cut(s) 638
NspI RCATGY 3 cut(s) 212, 1272, 1636
OliI CACNNNNGTG 1 cut(s) 1172
PaeR7I CTCGAG 1 cut(s) 542
PaqCI CACCTGC 1 cut(s) 454
PcsI WCGNNNNNNNCGW 1 cut(s) 1414
PctI GAATGC 1 cut(s) 621
PdmI GAANNNNTTC 1 cut(s) 1142
PfeI GAWTC 5 cut(s) 31, 518, 670, 862, 1475
PfoI TCCNGGA 1 cut(s) 1624
PkrI GCNGC 7 cut(s) 295, 451, 540, 568, 636, 1384, 1520
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
Psp6I CCWGG 3 cut(s) 340, 766, 1624
PspFI CCCAGC 1 cut(s) 534
PspGI CCWGG 3 cut(s) 340, 766, 1624
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 3 cut(s) 601, 775, 841
PspXI VCTCGAGB 1 cut(s) 542
PsuI RGATCY 1 cut(s) 735
PvuII CAGCTG 2 cut(s) 296, 538
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
RseI CAYNNNNRTG 1 cut(s) 1172
SaqAI TTAA 6 cut(s) 279, 606, 651, 990, 1116, 1493
SatI GCNGC 7 cut(s) 294, 450, 539, 567, 635, 1383, 1519
Sau3AI GATC 6 cut(s) 735, 754, 760, 890, 1123, 1541
Sau96I GGNCC 3 cut(s) 601, 775, 841
SchI GAGTC 1 cut(s) 709
ScrFI CCNGG 4 cut(s) 67, 342, 768, 1626
SduI GDGCHC 2 cut(s) 705, 1296
SfaNI GCATC 4 cut(s) 553, 1414, 1564, 1609
SfcI CTRYAG 1 cut(s) 1449
Sfr274I CTCGAG 1 cut(s) 542
SinI GGWCC 2 cut(s) 775, 841
SlaI CTCGAG 1 cut(s) 542
SmiMI CAYNNNNRTG 1 cut(s) 1172
SmlI CTYRAG 5 cut(s) 120, 201, 219, 356, 542
SmoI CTYRAG 5 cut(s) 120, 201, 219, 356, 542
SsiI CCGC 1 cut(s) 1519
SspMI CTAG 4 cut(s) 393, 888, 1044, 1080
StyD4I CCNGG 4 cut(s) 65, 340, 766, 1624
StyI CCWWGG 4 cut(s) 432, 1170, 1429, 1562
TaaI ACNGT 3 cut(s) 949, 1121, 1598
TaiI ACGT 1 cut(s) 1293
TaqI TCGA 2 cut(s) 543, 1032
TatI WGTACW 1 cut(s) 528
TauI GCSGC 1 cut(s) 1521
TfiI GAWTC 5 cut(s) 31, 518, 670, 862, 1475
Tru1I TTAA 6 cut(s) 279, 606, 651, 990, 1116, 1493
Tru9I TTAA 6 cut(s) 279, 606, 651, 990, 1116, 1493
TscAI CASTG 2 cut(s) 387, 1528
TseFI GTSAC 1 cut(s) 417
TseI GCWGC 6 cut(s) 293, 449, 538, 566, 634, 1382
Tsp45I GTSAC 1 cut(s) 417
TspDTI ATGAA 4 cut(s) 36, 983, 1175, 1383
TspRI CASTG 2 cut(s) 387, 1528
VpaK11BI GGWCC 2 cut(s) 775, 841
XapI RAATTY 4 cut(s) 307, 941, 1163, 1454
XceI RCATGY 3 cut(s) 212, 1272, 1636
XhoI CTCGAG 1 cut(s) 542
XmnI GAANNNNTTC 1 cut(s) 1142
XspI CTAG 4 cut(s) 393, 888, 1044, 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.