Rorug02G0584800

SWI SNF complex component SNF12 homolog

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
70768989 .. 70770407
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0584800.1

Sequence Viewer

Length: 1419 bp
ATGGCCCAGACCTGCCTCTCCATGAAACAACTCAAGCAAATCCACGCCCGCGCAATCCTTTCAAATCTCCACAACCACGCCATCGTTCTCGGCAAGATGTTCCGCTTCGCCGCGGTCTCACCCTCCGGTGACTTAAACTATGCCCACCAACTGTTCGATCAAATGCCCCAACCAACTACTTTCTTCTACAACCTCCTCATCCGGGGTCACTCCAAAAGCTCGTCGCCTTGGCATTCAGTGCTTCTATTCAACCAGATGAGACTAAACTCAATCGACCCAGATGAGTTTACCTTCACATTTTTGCTGAAATCTCGTTCGAGGATGAAGATGAATATCGAAAATGATGAGATACATGGGGCTGTGTTGAAGTCTGGGTTTTCCTTGCATTTGTTTGTGCAGAATTCGTTGATTCATTTGTATGCCGGGAGAGGGATTCCCAGTGCGGCTAGGAGAGTGTTCGACGAGGCTGTGACTGCTGATGTTGTGTCGTGGTCGGGTTTGGTTATTGCTCACGTGAGAGCCAATGAATTGGATTTTGCACGGCGGGTGTTTGATGAAATGCCTGGGAGGGATGTTGTTTCGTGGACCGCTATGATATCTGGGTATTCACAGGCTAAGTATTCGAGGGAAGCGCTTGGGTTGTTTTGGGAGATGAATCGTGAGGGAGTGAGACCTGACGAGGTCACCATGGTGAGTGTAATCTCAGCATGCACGGATTTAGGAGATGTTCAAACCGGGATAAGCATCCACCGGTTTATTGAGGAGAATGGGTTTGCGTGGATGGTTTCACTTTGCAATGCGCTGATTGATATGTATGCAAAGTGTGGATGCATGGACCGAGCATGGCAACTGTTTGATAGCATGGACCGAAAGAGCTTGATTACTTGGAATTCTATGATTTCAGCATGTGCAAACCATGGCAATGCTGATGATGCATTTGGGTTGTTTGAGTGTATGGTTAGTGCTGGTGTTCCACCTGATGGGGTCACATTCTTGGCCCTTTTAGTTGCTTATACACACAAGGGATTGGTAGATGAAGGGCTCAGACTATTTGAGAGAATGCAAAGGGAGTACAGAATCGAGGCTCGCATTGAGCATTATGGGTGTGTGGCAGATATGTTAGGCAAGGCAGGGCGATTGGAGGAAGCATACAGATTAATTAGTAGTATGCCGATTCCAGGCAATGATGTTGTTTGGGGAACACTGCTTGCAGCTTGCAGAACTTATGGCGATGTTGATATGGGCAAGAGGGTTGTCAAGCGGCTAATAGAGCTGAAACCGGATGAAGGTGGGTACTATATTCTCCTTCGTGATATTTATGTTGCAGCAGGAAGGATGGCAGAAGCAAACGATATGAGGCAAATGATGATGGATAATGGTGCTAGTAAGACTCCTGGACGCAGTTGGGTTGGAGCATGA

Protein Analysis

472

Amino Acids

52.98

Weight (kDa)

6.54

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 58 - 103 3.9e-07 PPR repeat family
PPR_2 PF13041 190 - 237 1.2e-11 PPR repeat family
PPR PF01535 193 - 223 1.1e-07 PPR repeat
PPR_long PF17177 258 - 387 2e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 292 - 335 5.3e-10 PPR repeat family
PPR PF01535 294 - 324 8.4e-09 PPR repeat
E_motif PF20431 409 - 470 4e-11 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 20
AccB7I CCANNNNNTGG 1 cut(s) 980
AccII CGCG 2 cut(s) 51, 113
AciI CCGC 8 cut(s) 49, 103, 111, 113, 443, 544, 588, 1261
AcsI RAATTY 2 cut(s) 400, 889
AcvI CACGTG 1 cut(s) 514
AfaI GTAC 2 cut(s) 1073, 1295
AfeI AGCGCT 1 cut(s) 633
AfiI CCNNNNNNNGG 5 cut(s) 202, 429, 980, 1178, 1286
AgeI ACCGGT 1 cut(s) 750
AgsI TTSAA 4 cut(s) 63, 250, 367, 731
AjnI CCWGG 3 cut(s) 562, 1177, 1393
AleI CACNNNNGTG 1 cut(s) 689
AluBI AGCT 4 cut(s) 219, 876, 1214, 1273
AluI AGCT 4 cut(s) 219, 876, 1214, 1273
Alw26I GTCTC 3 cut(s) 121, 253, 664
Aor51HI AGCGCT 1 cut(s) 633
AoxI GGCC 2 cut(s) 3, 996
ApeKI GCWGC 2 cut(s) 1211, 1325
ApoI RAATTY 2 cut(s) 400, 889
AseI ATTAAT 1 cut(s) 1157
AsiGI ACCGGT 1 cut(s) 750
AspLEI GCGC 3 cut(s) 53, 634, 802
AspS9I GGNCC 5 cut(s) 4, 585, 835, 865, 997
AsuC2I CCSGG 3 cut(s) 203, 424, 736
AsuHPI GGTGA 4 cut(s) 111, 140, 676, 703
AvaII GGWCC 3 cut(s) 585, 835, 865
BanII GRGCYC 1 cut(s) 1044
BbrPI CACGTG 1 cut(s) 514
BbvI GCAGC 2 cut(s) 1223, 1337
BccI CCATC 5 cut(s) 89, 775, 974, 1330, 1363
BceAI ACGGC 1 cut(s) 557
BciT130I CCWGG 3 cut(s) 564, 1179, 1395
BcnI CCSGG 3 cut(s) 203, 424, 736
BcoDI GTCTC 3 cut(s) 121, 253, 664
BfaI CTAG 2 cut(s) 447, 1383
BfoI RGCGCY 1 cut(s) 635
BfuAI ACCTGC 1 cut(s) 20
BisI GCNGC 5 cut(s) 111, 444, 1212, 1262, 1326
BlsI GCNGC 5 cut(s) 112, 445, 1213, 1263, 1327
Bme1390I CCNGG 6 cut(s) 203, 424, 564, 736, 1179, 1395
Bme18I GGWCC 3 cut(s) 585, 835, 865
BmgT120I GGNCC 5 cut(s) 4, 585, 835, 865, 997
BmrFI CCNGG 6 cut(s) 203, 424, 564, 736, 1179, 1395
BmrI ACTGGG 1 cut(s) 432
BmsI GCATC 3 cut(s) 753, 818, 922
BmuI ACTGGG 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 17
BpuMI CCSGG 3 cut(s) 203, 424, 736
BsaAI YACGTR 1 cut(s) 514
BsaBI GATNNNNATC 2 cut(s) 332, 743
BsaI GGTCTC 2 cut(s) 121, 664
BsaJI CCNNGG 6 cut(s) 111, 202, 227, 563, 687, 916
BsaWI WCCGGW 3 cut(s) 125, 750, 1279
BsaXI ACNNNNNCTCC 2 cut(s) 755, 785
Bsc4I CCNNNNNNNGG 5 cut(s) 202, 429, 980, 1178, 1286
Bse118I RCCGGY 1 cut(s) 750
Bse1I ACTGG 1 cut(s) 438
Bse3DI GCAATG 3 cut(s) 802, 928, 1189
Bse8I GATNNNNATC 2 cut(s) 332, 743
BseBI CCWGG 3 cut(s) 564, 1179, 1395
BseDI CCNNGG 6 cut(s) 111, 202, 227, 563, 687, 916
BseGI GGATG 8 cut(s) 198, 327, 577, 744, 786, 833, 1288, 1341
BseJI GATNNNNATC 2 cut(s) 332, 743
BseLI CCNNNNNNNGG 5 cut(s) 202, 429, 980, 1178, 1286
BseMI GCAATG 3 cut(s) 802, 928, 1189
BseMII CTCAG 2 cut(s) 717, 1057
BseNI ACTGG 1 cut(s) 438
BseRI GAGGAG 2 cut(s) 185, 776
BseXI GCAGC 2 cut(s) 1223, 1337
BsgI GTGCAG 1 cut(s) 416
Bsh1236I CGCG 2 cut(s) 51, 113
BshFI GGCC 2 cut(s) 5, 998
BshTI ACCGGT 1 cut(s) 750
BsiSI CCGG 6 cut(s) 126, 202, 423, 735, 751, 1280
BslI CCNNNNNNNGG 5 cut(s) 202, 429, 980, 1178, 1286
BsmAI GTCTC 3 cut(s) 121, 253, 664
BsmI GAATGC 2 cut(s) 232, 1065
BsnI GGCC 2 cut(s) 5, 998
Bso31I GGTCTC 2 cut(s) 121, 664
Bsp1286I GDGCHC 1 cut(s) 1044
Bsp143I GATC 1 cut(s) 157
Bsp19I CCATGG 2 cut(s) 687, 916
BspACI CCGC 8 cut(s) 49, 103, 111, 113, 443, 544, 588, 1261
BspANI GGCC 2 cut(s) 5, 998
BspCNI CTCAG 2 cut(s) 716, 1056
BspFNI CGCG 2 cut(s) 51, 113
BspMI ACCTGC 1 cut(s) 20
BspTNI GGTCTC 2 cut(s) 121, 664
BsrDI GCAATG 3 cut(s) 802, 928, 1189
BsrFI RCCGGY 1 cut(s) 750
BsrI ACTGG 1 cut(s) 438
BssAI RCCGGY 1 cut(s) 750
BssECI CCNNGG 6 cut(s) 111, 202, 227, 563, 687, 916
BssMI GATC 1 cut(s) 157
BssT1I CCWWGG 3 cut(s) 227, 687, 916
Bst2UI CCWGG 3 cut(s) 564, 1179, 1395
Bst4CI ACNGT 2 cut(s) 153, 852
BstAPI GCANNNNNTGC 1 cut(s) 238
BstBAI YACGTR 1 cut(s) 514
BstC8I GCNNGC 5 cut(s) 49, 709, 1087, 1209, 1216
BstDEI CTNAG 3 cut(s) 615, 703, 1043
BstDSI CCRYGG 3 cut(s) 111, 687, 916
BstEII GGTNACC 1 cut(s) 682
BstF5I GGATG 8 cut(s) 198, 327, 577, 744, 786, 833, 1288, 1341
BstFNI CGCG 2 cut(s) 51, 113
BstH2I RGCGCY 1 cut(s) 635
BstHHI GCGC 3 cut(s) 53, 634, 802
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 3 cut(s) 121, 253, 664
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 4 cut(s) 238, 473, 932, 1270
BstNI CCWGG 3 cut(s) 564, 1179, 1395
BstNSI RCATGY 2 cut(s) 711, 909
BstPI GGTNACC 1 cut(s) 682
BstSCI CCNGG 6 cut(s) 201, 422, 562, 734, 1177, 1393
BstUI CGCG 2 cut(s) 51, 113
BstV1I GCAGC 2 cut(s) 1223, 1337
BstXI CCANNNNNNTGG 1 cut(s) 529
BsuRI GGCC 2 cut(s) 5, 998
BtgI CCRYGG 3 cut(s) 111, 687, 916
BtgZI GCGATG 1 cut(s) 1245
BtsCI GGATG 8 cut(s) 198, 327, 577, 744, 786, 833, 1288, 1341
BtsI GCAGTG 1 cut(s) 1202
BtsIMutI CAGTG 3 cut(s) 243, 445, 1202
BveI ACCTGC 1 cut(s) 20
Cac8I GCNNGC 5 cut(s) 49, 709, 1087, 1209, 1216
CfoI GCGC 3 cut(s) 53, 634, 802
Cfr10I RCCGGY 1 cut(s) 750
Cfr13I GGNCC 5 cut(s) 4, 585, 835, 865, 997
Cfr42I CCGCGG 1 cut(s) 114
CseI GACGC 1 cut(s) 1407
Csp6I GTAC 2 cut(s) 1072, 1294
CspAI ACCGGT 1 cut(s) 750
CviQI GTAC 2 cut(s) 1072, 1294
DdeI CTNAG 3 cut(s) 615, 703, 1043
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eco130I CCWWGG 3 cut(s) 227, 687, 916
Eco24I GRGCYC 1 cut(s) 1044
Eco31I GGTCTC 2 cut(s) 121, 664
Eco32I GATATC 1 cut(s) 597
Eco47I GGWCC 3 cut(s) 585, 835, 865
Eco47III AGCGCT 1 cut(s) 633
Eco72I CACGTG 1 cut(s) 514
Eco91I GGTNACC 1 cut(s) 682
EcoO65I GGTNACC 1 cut(s) 682
EcoRI GAATTC 2 cut(s) 400, 889
EcoRII CCWGG 3 cut(s) 562, 1177, 1393
EcoRV GATATC 1 cut(s) 597
EcoT14I CCWWGG 3 cut(s) 227, 687, 916
EcoT22I ATGCAT 2 cut(s) 833, 937
EcoT38I GRGCYC 1 cut(s) 1044
ErhI CCWWGG 3 cut(s) 227, 687, 916
FauI CCCGC 2 cut(s) 56, 537
Fnu4HI GCNGC 5 cut(s) 111, 444, 1212, 1262, 1326
FokI GGATG 8 cut(s) 185, 334, 584, 731, 793, 840, 1295, 1348
FriOI GRGCYC 1 cut(s) 1044
Fsp4HI GCNGC 5 cut(s) 111, 444, 1212, 1262, 1326
FspBI CTAG 2 cut(s) 447, 1383
GlaI GCGC 3 cut(s) 52, 633, 801
GluI GCNGC 5 cut(s) 111, 444, 1212, 1262, 1326
HaeII RGCGCY 1 cut(s) 635
HaeIII GGCC 2 cut(s) 5, 998
HapII CCGG 6 cut(s) 126, 202, 423, 735, 751, 1280
HgaI GACGC 1 cut(s) 1407
HhaI GCGC 3 cut(s) 53, 634, 802
Hin6I GCGC 3 cut(s) 51, 632, 800
HinP1I GCGC 3 cut(s) 51, 632, 800
HinfI GANTC 6 cut(s) 409, 433, 655, 1077, 1174, 1390
HpaII CCGG 6 cut(s) 126, 202, 423, 735, 751, 1280
HphI GGTGA 4 cut(s) 111, 140, 676, 703
Hpy166II GTNNAC 2 cut(s) 288, 585
Hpy188I TCNGA 1 cut(s) 1046
Hpy188III TCNNGA 2 cut(s) 659, 1310
Hpy8I GTNNAC 2 cut(s) 288, 585
Hpy99I CGWCG 2 cut(s) 226, 464
HpyAV CCTTC 5 cut(s) 301, 1031, 1280, 1316, 1326
HpyCH4III ACNGT 2 cut(s) 153, 852
HpyCH4IV ACGT 1 cut(s) 513
HpyF10VI GCNNNNNNNGC 4 cut(s) 238, 473, 932, 1270
HpyF3I CTNAG 3 cut(s) 615, 703, 1043
HpySE526I ACGT 1 cut(s) 513
HspAI GCGC 3 cut(s) 51, 632, 800
KspI CCGCGG 1 cut(s) 114
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 1412
Lsp1109I GCAGC 2 cut(s) 1223, 1337
LweI GCATC 3 cut(s) 753, 818, 922
MaeI CTAG 2 cut(s) 447, 1383
MaeII ACGT 1 cut(s) 513
MaeIII GTNAC 5 cut(s) 128, 206, 469, 682, 985
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 2 cut(s) 175, 337
MhlI GDGCHC 1 cut(s) 1044
MluCI AATT 4 cut(s) 400, 527, 889, 1158
MlyI GAGTC 1 cut(s) 1384
MmeI TCCRAC 1 cut(s) 1390
Mph1103I ATGCAT 2 cut(s) 833, 937
MseI TTAA 2 cut(s) 134, 1157
MslI CAYNNNNRTG 3 cut(s) 417, 689, 921
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 6 cut(s) 126, 202, 423, 735, 751, 1280
MspR9I CCNGG 6 cut(s) 203, 424, 564, 736, 1179, 1395
Mva1269I GAATGC 2 cut(s) 232, 1065
MvaI CCWGG 3 cut(s) 564, 1179, 1395
MvnI CGCG 2 cut(s) 51, 113
MwoI GCNNNNNNNGC 4 cut(s) 238, 473, 932, 1270
NciI CCSGG 3 cut(s) 203, 424, 736
NcoI CCATGG 2 cut(s) 687, 916
NdeII GATC 1 cut(s) 157
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 5 cut(s) 128, 206, 469, 682, 985
NsiI ATGCAT 2 cut(s) 833, 937
NspI RCATGY 2 cut(s) 711, 909
OliI CACNNNNGTG 1 cut(s) 689
PaeI GCATGC 1 cut(s) 711
PctI GAATGC 2 cut(s) 232, 1065
PfeI GAWTC 5 cut(s) 409, 433, 655, 1077, 1174
PflFI GACNNNGTC 1 cut(s) 680
PflMI CCANNNNNTGG 1 cut(s) 980
PfoI TCCNGGA 1 cut(s) 1393
PinAI ACCGGT 1 cut(s) 750
PkrI GCNGC 5 cut(s) 112, 445, 1213, 1263, 1327
PleI GAGTC 1 cut(s) 1384
PmaCI CACGTG 1 cut(s) 514
PmlI CACGTG 1 cut(s) 514
PpsI GAGTC 1 cut(s) 1384
Ppu21I YACGTR 1 cut(s) 514
PshBI ATTAAT 1 cut(s) 1157
Psp6I CCWGG 3 cut(s) 562, 1177, 1393
PspCI CACGTG 1 cut(s) 514
PspEI GGTNACC 1 cut(s) 682
PspGI CCWGG 3 cut(s) 562, 1177, 1393
PspPI GGNCC 5 cut(s) 4, 585, 835, 865, 997
PsyI GACNNNGTC 1 cut(s) 680
RsaI GTAC 2 cut(s) 1073, 1295
RsaNI GTAC 2 cut(s) 1072, 1294
RseI CAYNNNNRTG 3 cut(s) 417, 689, 921
SacII CCGCGG 1 cut(s) 114
SaqAI TTAA 2 cut(s) 134, 1157
SatI GCNGC 5 cut(s) 111, 444, 1212, 1262, 1326
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 5 cut(s) 4, 585, 835, 865, 997
SchI GAGTC 1 cut(s) 1384
ScrFI CCNGG 6 cut(s) 203, 424, 564, 736, 1179, 1395
SduI GDGCHC 1 cut(s) 1044
SfaNI GCATC 3 cut(s) 753, 818, 922
Sfr303I CCGCGG 1 cut(s) 114
SgrBI CCGCGG 1 cut(s) 114
SinI GGWCC 3 cut(s) 585, 835, 865
SmiMI CAYNNNNRTG 3 cut(s) 417, 689, 921
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
SphI GCATGC 1 cut(s) 711
Sse9I AATT 4 cut(s) 400, 527, 889, 1158
SsiI CCGC 8 cut(s) 49, 103, 111, 113, 443, 544, 588, 1261
SspMI CTAG 2 cut(s) 447, 1383
StyD4I CCNGG 6 cut(s) 201, 422, 562, 734, 1177, 1393
StyI CCWWGG 3 cut(s) 227, 687, 916
TaaI ACNGT 2 cut(s) 153, 852
TaiI ACGT 1 cut(s) 516
TaqI TCGA 7 cut(s) 156, 273, 317, 336, 459, 623, 1080
TaqII GACCGA 2 cut(s) 852, 882
TasI AATT 4 cut(s) 400, 527, 889, 1158
TatI WGTACW 1 cut(s) 1071
TauI GCSGC 3 cut(s) 113, 446, 1264
TfiI GAWTC 5 cut(s) 409, 433, 655, 1077, 1174
Tru1I TTAA 2 cut(s) 134, 1157
Tru9I TTAA 2 cut(s) 134, 1157
TscAI CASTG 3 cut(s) 243, 445, 1209
TseFI GTSAC 5 cut(s) 128, 206, 469, 682, 985
TseI GCWGC 2 cut(s) 1211, 1325
Tsp45I GTSAC 5 cut(s) 128, 206, 469, 682, 985
TspDTI ATGAA 9 cut(s) 38, 338, 344, 401, 540, 570, 668, 1050, 1299
TspGWI ACGGA 1 cut(s) 728
TspRI CASTG 3 cut(s) 243, 445, 1209
Tth111I GACNNNGTC 1 cut(s) 680
Van91I CCANNNNNTGG 1 cut(s) 980
VpaK11BI GGWCC 3 cut(s) 585, 835, 865
VspI ATTAAT 1 cut(s) 1157
XapI RAATTY 2 cut(s) 400, 889
XceI RCATGY 2 cut(s) 711, 909
XspI CTAG 2 cut(s) 447, 1383
Zsp2I ATGCAT 2 cut(s) 833, 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.