pycom111g00990

SWI SNF complex component SNF12 homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
Physical Location & Seq
Reverse (-)
635683 .. 637523
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g00990.2

Sequence Viewer

Length: 1563 bp
ATGTCTATGAACAATAATAACCCACCTAAGAGTCTCGGAGCCCCCTCGTCACCCTTTGGCAATGTCAGTATGGTAGGGCAATCTATGTCTGCAAACCCTGCATTTCAACAATCGCAAGCCCAAACACAGATTGGGGCTGGTTACCAAGGTCAGTTTCAGCTCTCCCAAGCCCAGGCTATTGCCCAGGCTCAGTCAAAAGTTCATGCCCAATTCCAAGCTCAGTTCCAAGCTCAGGCGATGGCCCTTAACCAGAACCAATCTGTTGGCATTGCGAATTTGGGGTCATCTTCACCTTCCTTTTCCACACCTGGGAATGCAAGTGCCAAGCGCTACCCCCAAAAACCACCAATGCGCCCTTCTGGTGCTTCTCCTACGCACACGATGTCACCTCTGAGAACCATGGAACTCAACCCTGCTGCTCGTAAAAAGAAGCAGAAGCTTCCCGATAAACAGCTACAAGACAAAGTAGCCACCATTCTGCCTGAATCTGCTCTCTACACCCAGCTTCTCGAGTTTGAGGCTCGTGTTGATTCTGCCCTTGCAAGAAAGAAGGTTGACATCCAAGAGGCCCTTAAAAGCCCACCTTGCATTCAGAAAACGCTGCGGATTTATGTTTTTAACACTTTTGCTAATCAGGTTCGCTCGATTCCACAGAAGCCAAATGCTGATCCCCCTACTTGGACACTTAAAATAGTTGGGAGGATCTTGGAAGATGGGGTTGATCCTGACCAGCCTGGAATGGTCCAGAAATCAAATCCCTTTTATCCAAAGTTCTCATCTTTCTTCAAGAGAGTAACAATTTCTTTGGATCAGAGACTATATCCTGATAATCATATCATTTTGTGGGAAAATGCTCGATCACCGGCACCTCATGAGGGCTTCGAGGTGAAGAGAAAAGGGGACAAAGAATTTACTGTGAACATACGGTTGGAAATGAATTATGCGCCCGAGAAGTATAAGCTTTCTCAACCGTTGATGGAAATTCTTGGTATTGAGGTTGAAACCCGCCCCAGGATAATAGCTTCAATCTGGCACTATGTGAAAGCTAGGAAATTGCAGAACCAGCATGACCCCTCTTTCTTTAACTGTGATCCACCACTTCAGAAAGTATTTGGGGAAGAGAAGATGAAATTCACCATGGTATCGCAGAAGATATCTCAGCATTTGTTCCCCCCGCAACCTATACATTTGGAGCATAAGATAAAGCTTTCAGGAAATAGTCCAGCTGGAACTGCATGTTATGATGTGTTGGTTGATGTTCCTTTCCCAATCCAAAGGGATCTGTCTGCTCTTTTGGCCAACTCCGAGAAGAACAAAGAGATTGATGTCTGTGATGAAGCAATATGTGCAGCTATAAGAAAAATCCATGAACATCGTCGCAGGCGAGCGTTTTTCCTTGGGTTTAGTCAATCTCCTGTAGAATTTATCAATGCACTGATTGAATCTCAAAACAAAGATTTAAAGCTTGTAGCTGGAGTAGCAAACCGTAGTGCTGAAAAACAGAGGATCGATCAGATTTCTTCCACCAGCCATGGGTTGAAGATGCTGTTATCCGGTATCTGA

Protein Analysis

521

Amino Acids

58.08

Weight (kDa)

9.6

Isoelectric Point (pI)

58.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 865
AciI CCGC 3 cut(s) 604, 1006, 1175
AclWI GGATC 7 cut(s) 662, 710, 716, 816, 1085, 1287, 1514
AcoI YGGCCR 1 cut(s) 1296
AcsI RAATTY 5 cut(s) 274, 908, 981, 1130, 1421
AcuI CTGAAG 1 cut(s) 1085
AdeI CACNNNGTG 1 cut(s) 1039
AfeI AGCGCT 1 cut(s) 329
AfiI CCNNNNNNNGG 7 cut(s) 172, 232, 309, 678, 875, 1011, 1533
AgsI TTSAA 6 cut(s) 107, 787, 1001, 1026, 1442, 1540
AjnI CCWGG 5 cut(s) 171, 183, 307, 733, 1010
AjuI GAANNNNNNNTTGG 6 cut(s) 138, 170, 340, 372, 911, 943
Alw26I GTCTC 2 cut(s) 38, 808
AlwI GGATC 7 cut(s) 662, 710, 716, 816, 1085, 1287, 1514
Ama87I CYCGRG 2 cut(s) 509, 947
Aor51HI AGCGCT 1 cut(s) 329
AoxI GGCC 3 cut(s) 240, 567, 1296
ApeKI GCWGC 3 cut(s) 416, 601, 1349
ApoI RAATTY 5 cut(s) 274, 908, 981, 1130, 1421
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AspLEI GCGC 3 cut(s) 330, 354, 946
AspS9I GGNCC 3 cut(s) 241, 568, 742
AsuHPI GGTGA 6 cut(s) 42, 282, 378, 852, 898, 1126
AvaI CYCGRG 2 cut(s) 509, 947
AvaII GGWCC 1 cut(s) 742
BaeI ACNNNNGTAYC 2 cut(s) 1125, 1158
BalI TGGCCA 1 cut(s) 1298
BanI GGYRCC 1 cut(s) 865
BanII GRGCYC 1 cut(s) 43
BauI CACGAG 1 cut(s) 522
BbvI GCAGC 3 cut(s) 403, 588, 1361
BccI CCATC 3 cut(s) 232, 707, 970
BciT130I CCWGG 5 cut(s) 173, 185, 309, 735, 1012
BcoDI GTCTC 2 cut(s) 38, 808
BfaI CTAG 1 cut(s) 1047
BfmI CTRYAG 1 cut(s) 1416
BfoI RGCGCY 1 cut(s) 331
BisI GCNGC 3 cut(s) 417, 602, 1350
BlsI GCNGC 3 cut(s) 418, 603, 1351
Bme1390I CCNGG 5 cut(s) 173, 185, 309, 735, 1012
Bme18I GGWCC 1 cut(s) 742
BmeT110I CYCGRG 2 cut(s) 509, 947
BmgT120I GGNCC 3 cut(s) 241, 568, 742
BmiI GGNNCC 2 cut(s) 40, 867
BmrFI CCNGG 5 cut(s) 173, 185, 309, 735, 1012
BmsI GCATC 1 cut(s) 1533
BpmI CTGGAG 1 cut(s) 1494
Bpu10I CCTNAGC 1 cut(s) 231
Bsa29I ATCGAT 1 cut(s) 1509
BsaJI CCNNGG 9 cut(s) 145, 171, 183, 308, 399, 1010, 1137, 1396, 1531
BsaWI WCCGGW 1 cut(s) 1553
Bsc4I CCNNNNNNNGG 7 cut(s) 172, 232, 309, 678, 875, 1011, 1533
Bse118I RCCGGY 1 cut(s) 862
Bse3DI GCAATG 2 cut(s) 67, 267
BseBI CCWGG 5 cut(s) 173, 185, 309, 735, 1012
BseCI ATCGAT 1 cut(s) 1509
BseDI CCNNGG 9 cut(s) 145, 171, 183, 308, 399, 1010, 1137, 1396, 1531
BseGI GGATG 1 cut(s) 558
BseLI CCNNNNNNNGG 7 cut(s) 172, 232, 309, 678, 875, 1011, 1533
BseMI GCAATG 2 cut(s) 67, 267
BseMII CTCAG 5 cut(s) 203, 233, 245, 383, 1172
BseXI GCAGC 3 cut(s) 403, 588, 1361
BseYI CCCAGC 1 cut(s) 501
BsgI GTGCAG 1 cut(s) 1368
BshFI GGCC 3 cut(s) 242, 569, 1298
BshNI GGYRCC 1 cut(s) 865
BshVI ATCGAT 1 cut(s) 1509
BsiHKCI CYCGRG 2 cut(s) 509, 947
BsiSI CCGG 2 cut(s) 863, 1554
BslFI GGGAC 1 cut(s) 914
BslI CCNNNNNNNGG 7 cut(s) 172, 232, 309, 678, 875, 1011, 1533
BsmAI GTCTC 2 cut(s) 38, 808
BsmFI GGGAC 1 cut(s) 914
BsmI GAATGC 2 cut(s) 319, 588
BsnI GGCC 3 cut(s) 242, 569, 1298
BsoBI CYCGRG 2 cut(s) 509, 947
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 9 cut(s) 667, 702, 721, 808, 857, 1090, 1279, 1506, 1510
Bsp19I CCATGG 3 cut(s) 399, 1137, 1531
BspACI CCGC 3 cut(s) 604, 1006, 1175
BspANI GGCC 3 cut(s) 242, 569, 1298
BspCNI CTCAG 5 cut(s) 202, 232, 244, 384, 1171
BspDI ATCGAT 1 cut(s) 1509
BspHI TCATGA 1 cut(s) 871
BspLI GGNNCC 2 cut(s) 40, 867
BspPI GGATC 7 cut(s) 662, 710, 716, 816, 1085, 1287, 1514
BspT107I GGYRCC 1 cut(s) 865
BsrDI GCAATG 2 cut(s) 67, 267
BsrFI RCCGGY 1 cut(s) 862
BssAI RCCGGY 1 cut(s) 862
BssECI CCNNGG 9 cut(s) 145, 171, 183, 308, 399, 1010, 1137, 1396, 1531
BssMI GATC 9 cut(s) 667, 702, 721, 808, 857, 1090, 1279, 1506, 1510
BssSI CACGAG 1 cut(s) 522
BssT1I CCWWGG 5 cut(s) 145, 399, 1137, 1396, 1531
Bst2BI CACGAG 1 cut(s) 522
Bst2UI CCWGG 5 cut(s) 173, 185, 309, 735, 1012
Bst4CI ACNGT 5 cut(s) 916, 927, 972, 1088, 1487
Bst6I CTCTTC 2 cut(s) 884, 1113
BstAPI GCANNNNNTGC 2 cut(s) 98, 1346
BstC8I GCNNGC 3 cut(s) 117, 1382, 1386
BstDEI CTNAG 6 cut(s) 27, 189, 219, 231, 392, 1158
BstDSI CCRYGG 3 cut(s) 399, 1137, 1531
BstEII GGTNACC 1 cut(s) 140
BstF5I GGATG 1 cut(s) 558
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 3 cut(s) 330, 354, 946
BstKTI GATC 9 cut(s) 670, 705, 724, 811, 860, 1093, 1282, 1509, 1513
BstMAI GTCTC 2 cut(s) 38, 808
BstMBI GATC 9 cut(s) 667, 702, 721, 808, 857, 1090, 1279, 1506, 1510
BstMWI GCNNNNNNNGC 7 cut(s) 98, 585, 1063, 1232, 1295, 1346, 1478
BstNI CCWGG 5 cut(s) 173, 185, 309, 735, 1012
BstNSI RCATGY 1 cut(s) 1239
BstPI GGTNACC 1 cut(s) 140
BstSCI CCNGG 5 cut(s) 171, 183, 307, 733, 1010
BstSFI CTRYAG 1 cut(s) 1416
BstV1I GCAGC 3 cut(s) 403, 588, 1361
BstX2I RGATCY 2 cut(s) 702, 1279
BstXI CCANNNNNNTGG 1 cut(s) 263
BstYI RGATCY 2 cut(s) 702, 1279
Bsu15I ATCGAT 1 cut(s) 1509
BsuRI GGCC 3 cut(s) 242, 569, 1298
BsuTUI ATCGAT 1 cut(s) 1509
BtgI CCRYGG 3 cut(s) 399, 1137, 1531
BtgZI GCGATG 1 cut(s) 251
BtsCI GGATG 1 cut(s) 558
BtsIMutI CAGTG 1 cut(s) 1433
Cac8I GCNNGC 3 cut(s) 117, 1382, 1386
CciI TCATGA 1 cut(s) 871
CfoI GCGC 3 cut(s) 330, 354, 946
Cfr10I RCCGGY 1 cut(s) 862
Cfr13I GGNCC 3 cut(s) 241, 568, 742
ClaI ATCGAT 1 cut(s) 1509
CviAII CATG 8 cut(s) 203, 400, 872, 1067, 1138, 1236, 1367, 1532
DdeI CTNAG 6 cut(s) 27, 189, 219, 231, 392, 1158
DpnI GATC 9 cut(s) 669, 704, 723, 810, 859, 1092, 1281, 1508, 1512
DpnII GATC 9 cut(s) 667, 702, 721, 808, 857, 1090, 1279, 1506, 1510
DraI TTTAAA 1 cut(s) 1461
DraIII CACNNNGTG 1 cut(s) 1039
EaeI YGGCCR 1 cut(s) 1296
Eam1104I CTCTTC 2 cut(s) 884, 1113
EarI CTCTTC 2 cut(s) 884, 1113
Eco130I CCWWGG 5 cut(s) 145, 399, 1137, 1396, 1531
Eco24I GRGCYC 1 cut(s) 43
Eco32I GATATC 1 cut(s) 1155
Eco47I GGWCC 1 cut(s) 742
Eco47III AGCGCT 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 1085
Eco88I CYCGRG 2 cut(s) 509, 947
Eco91I GGTNACC 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 568
EcoO65I GGTNACC 1 cut(s) 140
EcoRII CCWGG 5 cut(s) 171, 183, 307, 733, 1010
EcoRV GATATC 1 cut(s) 1155
EcoT14I CCWWGG 5 cut(s) 145, 399, 1137, 1396, 1531
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 5 cut(s) 145, 399, 1137, 1396, 1531
FaeI CATG 8 cut(s) 206, 403, 875, 1070, 1141, 1239, 1370, 1535
FalI AAGNNNNNCTT 4 cut(s) 555, 587, 568, 600
FaqI GGGAC 1 cut(s) 914
FatI CATG 8 cut(s) 202, 399, 871, 1066, 1137, 1235, 1366, 1531
FauI CCCGC 2 cut(s) 1013, 1182
Fnu4HI GCNGC 3 cut(s) 417, 602, 1350
FokI GGATG 1 cut(s) 545
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 3 cut(s) 417, 602, 1350
FspBI CTAG 1 cut(s) 1047
GlaI GCGC 3 cut(s) 329, 353, 945
GluI GCNGC 3 cut(s) 417, 602, 1350
GsaI CCCAGC 1 cut(s) 505
GsuI CTGGAG 1 cut(s) 1494
HaeII RGCGCY 1 cut(s) 331
HaeIII GGCC 3 cut(s) 242, 569, 1298
HapII CCGG 2 cut(s) 863, 1554
HhaI GCGC 3 cut(s) 330, 354, 946
Hin1II CATG 8 cut(s) 206, 403, 875, 1070, 1141, 1239, 1370, 1535
Hin6I GCGC 3 cut(s) 328, 352, 944
HinP1I GCGC 3 cut(s) 328, 352, 944
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HindIII AAGCTT 4 cut(s) 437, 959, 1205, 1463
HinfI GANTC 5 cut(s) 31, 485, 530, 646, 1442
HpaII CCGG 2 cut(s) 863, 1554
HphI GGTGA 6 cut(s) 42, 282, 378, 852, 898, 1126
Hpy166II GTNNAC 2 cut(s) 556, 919
Hpy188I TCNGA 8 cut(s) 38, 393, 594, 813, 1104, 1306, 1515, 1562
Hpy188III TCNNGA 8 cut(s) 443, 509, 725, 745, 787, 824, 872, 1212
Hpy8I GTNNAC 2 cut(s) 556, 919
Hpy99I CGWCG 1 cut(s) 1380
HpyAV CCTTC 3 cut(s) 303, 366, 544
HpyCH4III ACNGT 5 cut(s) 916, 927, 972, 1088, 1487
HpyCH4V TGCA 9 cut(s) 92, 101, 317, 542, 588, 1057, 1235, 1349, 1433
HpyF10VI GCNNNNNNNGC 7 cut(s) 98, 585, 1063, 1232, 1295, 1346, 1478
HpyF3I CTNAG 6 cut(s) 27, 189, 219, 231, 392, 1158
Hsp92II CATG 8 cut(s) 206, 403, 875, 1070, 1141, 1239, 1370, 1535
HspAI GCGC 3 cut(s) 328, 352, 944
Kzo9I GATC 9 cut(s) 667, 702, 721, 808, 857, 1090, 1279, 1506, 1510
LmnI GCTCC 2 cut(s) 38, 1192
Lsp1109I GCAGC 3 cut(s) 403, 588, 1361
LweI GCATC 1 cut(s) 1533
MaeI CTAG 1 cut(s) 1047
MaeIII GTNAC 4 cut(s) 48, 140, 384, 793
MalI GATC 9 cut(s) 669, 704, 723, 810, 859, 1092, 1281, 1508, 1512
MboI GATC 9 cut(s) 667, 702, 721, 808, 857, 1090, 1279, 1506, 1510
MflI RGATCY 2 cut(s) 702, 1279
MhlI GDGCHC 1 cut(s) 43
MlsI TGGCCA 1 cut(s) 1298
MluCI AATT 9 cut(s) 209, 274, 798, 908, 937, 981, 1052, 1130, 1421
MluNI TGGCCA 1 cut(s) 1298
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 909
Mox20I TGGCCA 1 cut(s) 1298
MscI TGGCCA 1 cut(s) 1298
MseI TTAA 6 cut(s) 246, 573, 618, 687, 1083, 1460
Msp20I TGGCCA 1 cut(s) 1298
MspA1I CMGCKG 1 cut(s) 1226
MspI CCGG 2 cut(s) 863, 1554
MspR9I CCNGG 5 cut(s) 173, 185, 309, 735, 1012
Mva1269I GAATGC 2 cut(s) 319, 588
MvaI CCWGG 5 cut(s) 173, 185, 309, 735, 1012
MwoI GCNNNNNNNGC 7 cut(s) 98, 585, 1063, 1232, 1295, 1346, 1478
NcoI CCATGG 3 cut(s) 399, 1137, 1531
NdeII GATC 9 cut(s) 667, 702, 721, 808, 857, 1090, 1279, 1506, 1510
NlaIII CATG 8 cut(s) 206, 403, 875, 1070, 1141, 1239, 1370, 1535
NlaIV GGNNCC 2 cut(s) 40, 867
NmuCI GTSAC 2 cut(s) 48, 384
NspI RCATGY 1 cut(s) 1239
PaeR7I CTCGAG 1 cut(s) 509
PagI TCATGA 1 cut(s) 871
PcsI WCGNNNNNNNCGW 1 cut(s) 1381
PctI GAATGC 2 cut(s) 319, 588
PfeI GAWTC 4 cut(s) 485, 530, 646, 1442
PkrI GCNGC 3 cut(s) 418, 603, 1351
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
Psp6I CCWGG 5 cut(s) 171, 183, 307, 733, 1010
PspEI GGTNACC 1 cut(s) 140
PspFI CCCAGC 1 cut(s) 501
PspGI CCWGG 5 cut(s) 171, 183, 307, 733, 1010
PspN4I GGNNCC 2 cut(s) 40, 867
PspPI GGNCC 3 cut(s) 241, 568, 742
PsuI RGATCY 2 cut(s) 702, 1279
PvuII CAGCTG 1 cut(s) 1226
SaqAI TTAA 6 cut(s) 246, 573, 618, 687, 1083, 1460
SatI GCNGC 3 cut(s) 417, 602, 1350
Sau3AI GATC 9 cut(s) 667, 702, 721, 808, 857, 1090, 1279, 1506, 1510
Sau96I GGNCC 3 cut(s) 241, 568, 742
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 5 cut(s) 173, 185, 309, 735, 1012
SduI GDGCHC 1 cut(s) 43
SfaNI GCATC 1 cut(s) 1533
SfcI CTRYAG 1 cut(s) 1416
Sfr274I CTCGAG 1 cut(s) 509
SinI GGWCC 1 cut(s) 742
SlaI CTCGAG 1 cut(s) 509
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 9 cut(s) 209, 274, 798, 908, 937, 981, 1052, 1130, 1421
SsiI CCGC 3 cut(s) 604, 1006, 1175
SspMI CTAG 1 cut(s) 1047
StyD4I CCNGG 5 cut(s) 171, 183, 307, 733, 1010
StyI CCWWGG 5 cut(s) 145, 399, 1137, 1396, 1531
TaaI ACNGT 5 cut(s) 916, 927, 972, 1088, 1487
TaqI TCGA 5 cut(s) 510, 644, 856, 882, 1509
TasI AATT 9 cut(s) 209, 274, 798, 908, 937, 981, 1052, 1130, 1421
TfiI GAWTC 4 cut(s) 485, 530, 646, 1442
Tru1I TTAA 6 cut(s) 246, 573, 618, 687, 1083, 1460
Tru9I TTAA 6 cut(s) 246, 573, 618, 687, 1083, 1460
TscAI CASTG 1 cut(s) 1440
TseFI GTSAC 2 cut(s) 48, 384
TseI GCWGC 3 cut(s) 416, 601, 1349
Tsp45I GTSAC 2 cut(s) 48, 384
TspDTI ATGAA 6 cut(s) 23, 191, 950, 1142, 1350, 1383
TspRI CASTG 1 cut(s) 1440
VpaK11BI GGWCC 1 cut(s) 742
XapI RAATTY 5 cut(s) 274, 908, 981, 1130, 1421
XceI RCATGY 1 cut(s) 1239
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XhoI CTCGAG 1 cut(s) 509
XspI CTAG 1 cut(s) 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.