FvH4_6g53950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005445
Physical Location & Seq
Forward (+)
39466528 .. 39469488
2961 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53950.t9

Sequence Viewer

Length: 792 bp
ATGAGAGAAATCAAGCATCTGTGGAGACTTAATAAATGTGAAAAGAAGTATAAAAGGCAACTGATTATGAGGACTGATGACTTTGAGAAACCTATGAAGACAAATGTCCTGTGTAGCAACTGGAGGAAATGGAAGCAACCTATTATATGGTTCCAAGGAACAAATGACGCTGTGGCAGCCCAGTTTTTCTTGAAGAATATACACCCTGAGATGAGCAATGCTGCTTCTAATTTATTTGGAAAGCCAGAGATTCTCCATTCACGGCCTAATGTGTTTGGAGAGCTGATGAGAGTGCTTATATCTCCTTCTGAAGATGTTGAGGAAGCAGTCAATTGGGTTCTTGGCGGAGTGGATCCTGATATTTCTCTGCACATGCGAATGCTTATGAATAGGACAGTGAGAGCTGCACAGGCAGCATTGAACTGCATCAGAAAAGCTATGCGCAATTTGGGTGAATCCACAAGACCCAAGGTGGTCTTAGTGTCAGATACCCCCTCTCTTATAAAAAGTATTACACCTGATATAAGCAAGTTTGCAGAGGTAATTCATTTTGATTATGAACTTTTCAAAGGAAATATATCTGATGGCGGTAAAGGATTGCGAAGTTTAGAATTCAGAGCAAAAGATTGGGGCCCAGCACCCAGATGGGTAGCCTTTGTGGACTTCTTTCTTGCATCACGGGCAAAACATGCTGTTGTGTCTGGTGCTCACAGGCGTGTTGGGACTACATATGCTCAGTTAATTGCAGCACTGGCTGCAGCAAACAATCTAGCTTCCAAAGAGATTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

29.82

Weight (kDa)

9.77

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7810 PF25102 74 - 381 4.3e-158 Family of unknown function (DUF7810)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 503
Acc16I TGCGCA 1 cut(s) 443
AciI CCGC 2 cut(s) 345, 588
AclWI GGATC 2 cut(s) 347, 360
AcsI RAATTY 1 cut(s) 611
AcuI CTGAAG 1 cut(s) 330
AgsI TTSAA 3 cut(s) 193, 421, 568
AleI CACNNNNGTG 1 cut(s) 714
AluBI AGCT 4 cut(s) 283, 404, 437, 773
AluI AGCT 4 cut(s) 283, 404, 437, 773
Alw21I GWGCWC 1 cut(s) 709
Alw26I GTCTC 1 cut(s) 19
AlwI GGATC 2 cut(s) 347, 360
AoxI GGCC 2 cut(s) 263, 631
ApaI GGGCCC 1 cut(s) 635
ApeKI GCWGC 7 cut(s) 176, 221, 404, 413, 746, 755, 758
ApoI RAATTY 1 cut(s) 611
AspLEI GCGC 1 cut(s) 444
AspS9I GGNCC 2 cut(s) 631, 632
AsuHPI GGTGA 1 cut(s) 464
BaeGI GKGCMC 1 cut(s) 635
BamHI GGATCC 1 cut(s) 352
BanII GRGCYC 1 cut(s) 635
BbsI GAAGAC 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 709
BbvI GCAGC 7 cut(s) 188, 208, 391, 425, 742, 758, 770
BccI CCATC 2 cut(s) 578, 639
BceAI ACGGC 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 1 cut(s) 770
BfmI CTRYAG 1 cut(s) 756
BisI GCNGC 7 cut(s) 177, 222, 405, 414, 747, 756, 759
BlsI GCNGC 7 cut(s) 178, 223, 406, 415, 748, 757, 760
BmgT120I GGNCC 2 cut(s) 631, 632
BmiI GGNNCC 4 cut(s) 152, 354, 632, 633
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 3 cut(s) 25, 435, 683
BmuI ACTGGG 1 cut(s) 175
BoxI GACNNNNGTC 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 104
BpmI CTGGAG 1 cut(s) 142
BsaJI CCNNGG 2 cut(s) 154, 468
Bse1I ACTGG 3 cut(s) 125, 181, 756
Bse3DI GCAATG 1 cut(s) 223
BseDI CCNNGG 2 cut(s) 154, 468
BseMI GCAATG 1 cut(s) 223
BseMII CTCAG 2 cut(s) 198, 749
BseNI ACTGG 3 cut(s) 125, 181, 756
BseSI GKGCMC 1 cut(s) 635
BseXI GCAGC 7 cut(s) 188, 208, 391, 425, 742, 758, 770
BseYI CCCAGC 1 cut(s) 634
BsgI GTGCAG 2 cut(s) 353, 390
BshFI GGCC 2 cut(s) 265, 633
BsiHKAI GWGCWC 1 cut(s) 709
BslFI GGGAC 1 cut(s) 736
BsmAI GTCTC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 736
BsmI GAATGC 1 cut(s) 384
BsnI GGCC 2 cut(s) 265, 633
Bsp120I GGGCCC 1 cut(s) 631
Bsp1286I GDGCHC 2 cut(s) 635, 709
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 2 cut(s) 345, 588
BspANI GGCC 2 cut(s) 265, 633
BspCNI CTCAG 2 cut(s) 199, 748
BspLI GGNNCC 4 cut(s) 152, 354, 632, 633
BspMAI CTGCAG 1 cut(s) 760
BspPI GGATC 2 cut(s) 347, 360
BsrDI GCAATG 1 cut(s) 223
BsrI ACTGG 3 cut(s) 125, 181, 756
BssECI CCNNGG 2 cut(s) 154, 468
BssMI GATC 1 cut(s) 352
BssT1I CCWWGG 2 cut(s) 154, 468
Bst4CI ACNGT 1 cut(s) 397
BstAPI GCANNNNNTGC 2 cut(s) 689, 755
BstDEI CTNAG 3 cut(s) 207, 478, 735
BstHHI GCGC 1 cut(s) 444
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 7 cut(s) 176, 410, 413, 680, 689, 752, 755
BstNSI RCATGY 2 cut(s) 376, 692
BstPAI GACNNNNGTC 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 756
BstSLI GKGCMC 1 cut(s) 635
BstV1I GCAGC 7 cut(s) 188, 208, 391, 425, 742, 758, 770
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 2 cut(s) 265, 633
BtsIMutI CAGTG 2 cut(s) 402, 749
CfoI GCGC 1 cut(s) 444
Cfr13I GGNCC 2 cut(s) 631, 632
CseI GACGC 1 cut(s) 176
CviAII CATG 2 cut(s) 373, 689
DdeI CTNAG 3 cut(s) 207, 478, 735
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
EciI GGCGGA 1 cut(s) 360
Eco130I CCWWGG 2 cut(s) 154, 468
Eco24I GRGCYC 1 cut(s) 635
Eco57I CTGAAG 1 cut(s) 330
EcoO109I RGGNCCY 1 cut(s) 631
EcoRI GAATTC 1 cut(s) 611
EcoT14I CCWWGG 2 cut(s) 154, 468
EcoT38I GRGCYC 1 cut(s) 635
ErhI CCWWGG 2 cut(s) 154, 468
FaeI CATG 2 cut(s) 376, 692
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FaqI GGGAC 1 cut(s) 736
FatI CATG 2 cut(s) 372, 688
FauNDI CATATG 1 cut(s) 730
Fnu4HI GCNGC 7 cut(s) 177, 222, 405, 414, 747, 756, 759
FriOI GRGCYC 1 cut(s) 635
Fsp4HI GCNGC 7 cut(s) 177, 222, 405, 414, 747, 756, 759
FspBI CTAG 1 cut(s) 770
FspI TGCGCA 1 cut(s) 443
GlaI GCGC 1 cut(s) 443
GluI GCNGC 7 cut(s) 177, 222, 405, 414, 747, 756, 759
GsaI CCCAGC 1 cut(s) 638
GsuI CTGGAG 1 cut(s) 142
HaeIII GGCC 2 cut(s) 265, 633
HgaI GACGC 1 cut(s) 176
HhaI GCGC 1 cut(s) 444
Hin1II CATG 2 cut(s) 376, 692
Hin6I GCGC 1 cut(s) 442
HinP1I GCGC 1 cut(s) 442
HinfI GANTC 2 cut(s) 250, 455
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 1 cut(s) 661
Hpy188I TCNGA 5 cut(s) 310, 431, 487, 583, 617
Hpy188III TCNNGA 2 cut(s) 190, 356
Hpy8I GTNNAC 1 cut(s) 661
HpyAV CCTTC 1 cut(s) 315
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4V TGCA 7 cut(s) 370, 407, 426, 536, 674, 746, 758
HpyF10VI GCNNNNNNNGC 7 cut(s) 176, 410, 413, 680, 689, 752, 755
HpyF3I CTNAG 3 cut(s) 207, 478, 735
Hsp92II CATG 2 cut(s) 376, 692
HspAI GCGC 1 cut(s) 442
Kzo9I GATC 1 cut(s) 352
Lsp1109I GCAGC 7 cut(s) 188, 208, 391, 425, 742, 758, 770
LweI GCATC 3 cut(s) 25, 435, 683
MaeI CTAG 1 cut(s) 770
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 3 cut(s) 109, 205, 323
MfeI CAATTG 1 cut(s) 331
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 2 cut(s) 635, 709
MluCI AATT 6 cut(s) 229, 331, 445, 543, 611, 741
MnlI CCTC 5 cut(s) 63, 117, 313, 505, 532
MseI TTAA 3 cut(s) 30, 740, 790
MslI CAYNNNNRTG 3 cut(s) 377, 643, 714
MunI CAATTG 1 cut(s) 331
Mva1269I GAATGC 1 cut(s) 384
MwoI GCNNNNNNNGC 7 cut(s) 176, 410, 413, 680, 689, 752, 755
NdeI CATATG 1 cut(s) 730
NdeII GATC 1 cut(s) 352
NlaIII CATG 2 cut(s) 376, 692
NlaIV GGNNCC 4 cut(s) 152, 354, 632, 633
NsbI TGCGCA 1 cut(s) 443
NspI RCATGY 2 cut(s) 376, 692
OliI CACNNNNGTG 1 cut(s) 714
PctI GAATGC 1 cut(s) 384
PfeI GAWTC 2 cut(s) 250, 455
PkrI GCNGC 7 cut(s) 178, 223, 406, 415, 748, 757, 760
PshAI GACNNNNGTC 1 cut(s) 104
PsiI TTATAA 1 cut(s) 503
PspFI CCCAGC 1 cut(s) 634
PspN4I GGNNCC 4 cut(s) 152, 354, 632, 633
PspOMI GGGCCC 1 cut(s) 631
PspPI GGNCC 2 cut(s) 631, 632
PstI CTGCAG 1 cut(s) 760
PsuI RGATCY 1 cut(s) 352
RseI CAYNNNNRTG 3 cut(s) 377, 643, 714
SaqAI TTAA 3 cut(s) 30, 740, 790
SatI GCNGC 7 cut(s) 177, 222, 405, 414, 747, 756, 759
Sau3AI GATC 1 cut(s) 352
Sau96I GGNCC 2 cut(s) 631, 632
SduI GDGCHC 2 cut(s) 635, 709
SetI ASST 9 cut(s) 94, 142, 285, 406, 439, 474, 520, 543, 775
SfaNI GCATC 3 cut(s) 25, 435, 683
SfcI CTRYAG 1 cut(s) 756
SmiMI CAYNNNNRTG 3 cut(s) 377, 643, 714
Sse9I AATT 6 cut(s) 229, 331, 445, 543, 611, 741
SsiI CCGC 2 cut(s) 345, 588
SspMI CTAG 1 cut(s) 770
StyI CCWWGG 2 cut(s) 154, 468
TaaI ACNGT 1 cut(s) 397
TasI AATT 6 cut(s) 229, 331, 445, 543, 611, 741
TfiI GAWTC 2 cut(s) 250, 455
Tru1I TTAA 3 cut(s) 30, 740, 790
Tru9I TTAA 3 cut(s) 30, 740, 790
TscAI CASTG 2 cut(s) 402, 756
TseI GCWGC 7 cut(s) 176, 221, 404, 413, 746, 755, 758
TspDTI ATGAA 4 cut(s) 110, 401, 536, 573
TspRI CASTG 2 cut(s) 402, 756
XapI RAATTY 1 cut(s) 611
XceI RCATGY 2 cut(s) 376, 692
XcmI CCANNNNNNNNNTGG 1 cut(s) 642
XspI CTAG 1 cut(s) 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.