Rorug02G0590500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005445
Physical Location & Seq
Forward (+)
71326811 .. 71327764
954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0590500.1

Sequence Viewer

Length: 954 bp
ATGGCGTCGACGACGACCACCTCCTTCACACTTTCACCAACGCCTCTTCCTCATCTCACTTTCAAACGCCCGCTTAACTTCCCTAATCCTCCTATTAAGACCTTCTCTCTGTTCCCTGGGAAGTTTCGACAACCTAGGGTTTTCGTGACCGGCGCGAGAGCAAGCCTTTGCGGAGGCGGAGACGCCGTAAAAAACAATGAGTCACCTTCGGAATTCAGGCAGCGTGGAGGAGGAAGATCATCGTATGCCAACAATGATGGTGAGGGGCTCGTTCTATGTCAAGAGGAGTTGCACAGGATCCTGAAACTCCTCGCCTCTATAATGTCGTTTGTATCCGTAGATGGTGATCCAAACAAAGGAGTTGAAGAAAAGAAACGTGAGTTGGTTTTGCAGTATATAGCCTCTAATGGTGGTGCAACTGTTCCGGCCGAAGAGTATTATCGTTGTCTTGCTAGGCTGCTTAAGGAGTGGCATACTGATATTCAAGAACAAGAGCAACGTTCTCGAGAGTTTGATTTCCGAAAGCTCTCGAAAATTATCTCTCTAATGAGAAAGGTCCTCAGCTGGATTCGTAAGTTCTTCGACTTTATAGGAAAGATTTTCAGCTGGAGTGGCGGGCCGCCGTGGTTTTGCATTCTATTGCTACTTTGTGCCATCGGTGTGGTTCTCTGTATTTTTCTCTTGCCTGTATTTCTTATTTGGAAATGTTGTGTTCGAAGACCAGACCCACCCCCCTCGCCACCGCCCATCAATCCCAGTGTAGTGAAAAATTTGTTGCCGTTCATCAATCCCAGTGTAGTGCAAAATTTGTTGCCATTGAGCACCTTCATTCCCAGCTTTAATCCGAGTCTAGTGAAAAATTTGTTGCCGTTGAGCAGCGTCAGATTAGCGACGCTAGCGATCCAACTAAAGATTTTTATTCCAGTGATGATCATGGTAGCTGCGGTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

317

Amino Acids

35.47

Weight (kDa)

9.74

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 8
AccII CGCG 1 cut(s) 155
AciI CCGC 7 cut(s) 71, 171, 177, 615, 620, 743, 944
AclI AACGTT 1 cut(s) 499
AclWI GGATC 4 cut(s) 292, 305, 341, 895
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 4 cut(s) 212, 769, 805, 859
AcyI GRCGYC 2 cut(s) 5, 183
AfiI CCNNNNNNNGG 1 cut(s) 356
AflII CTTAAG 1 cut(s) 461
AgsI TTSAA 3 cut(s) 64, 365, 485
AjnI CCWGG 1 cut(s) 115
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
AluBI AGCT 5 cut(s) 526, 564, 606, 837, 941
AluI AGCT 5 cut(s) 526, 564, 606, 837, 941
Alw21I GWGCWC 1 cut(s) 824
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 4 cut(s) 292, 305, 341, 895
Ama87I CYCGRG 1 cut(s) 504
AoxI GGCC 2 cut(s) 426, 617
ApeKI GCWGC 4 cut(s) 220, 457, 876, 941
ApoI RAATTY 4 cut(s) 212, 769, 805, 859
AspA2I CCTAGG 1 cut(s) 134
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 2 cut(s) 556, 617
AsuHPI GGTGA 4 cut(s) 27, 195, 272, 356
AsuII TTCGAA 1 cut(s) 715
AsuNHI GCTAGC 1 cut(s) 895
AvaI CYCGRG 1 cut(s) 504
AvaII GGWCC 1 cut(s) 556
AvrII CCTAGG 1 cut(s) 134
BamHI GGATCC 1 cut(s) 297
BanII GRGCYC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 724
Bbv12I GWGCWC 1 cut(s) 824
BbvCI CCTCAGC 1 cut(s) 560
BbvI GCAGC 4 cut(s) 232, 444, 888, 928
BccI CCATC 4 cut(s) 251, 335, 662, 755
BceAI ACGGC 4 cut(s) 170, 607, 763, 853
BcgI CGANNNNNNTGC 2 cut(s) 485, 519
BciT130I CCWGG 1 cut(s) 117
BciVI GTATCC 1 cut(s) 343
BclI TGATCA 1 cut(s) 930
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 4 cut(s) 135, 453, 851, 896
BfrI CTTAAG 1 cut(s) 461
BfuI GTATCC 1 cut(s) 343
BisI GCNGC 5 cut(s) 221, 458, 620, 877, 942
BlnI CCTAGG 1 cut(s) 134
BlsI GCNGC 5 cut(s) 222, 459, 621, 878, 943
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 556
BmeT110I CYCGRG 1 cut(s) 504
BmgT120I GGNCC 2 cut(s) 556, 617
BmiI GGNNCC 1 cut(s) 299
BmrFI CCNGG 1 cut(s) 117
BmrI ACTGGG 2 cut(s) 750, 786
BmtI GCTAGC 1 cut(s) 899
BmuI ACTGGG 2 cut(s) 750, 786
BpiI GAAGAC 1 cut(s) 724
BpmI CTGGAG 1 cut(s) 628
Bpu10I CCTNAGC 1 cut(s) 560
Bpu14I TTCGAA 1 cut(s) 715
BsaBI GATNNNNATC 1 cut(s) 345
BsaHI GRCGYC 2 cut(s) 5, 183
BsaJI CCNNGG 4 cut(s) 115, 116, 134, 623
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 3 cut(s) 756, 792, 923
Bse8I GATNNNNATC 1 cut(s) 345
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 4 cut(s) 115, 116, 134, 623
BseJI GATNNNNATC 1 cut(s) 345
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMII CTCAG 1 cut(s) 574
BseNI ACTGG 3 cut(s) 756, 792, 923
BseRI GAGGAG 3 cut(s) 243, 299, 299
BseX3I CGGCCG 1 cut(s) 426
BseXI GCAGC 4 cut(s) 232, 444, 888, 928
BseYI CCCAGC 1 cut(s) 833
Bsh1236I CGCG 1 cut(s) 155
Bsh1285I CGRYCG 1 cut(s) 429
BshFI GGCC 2 cut(s) 428, 619
BsiEI CGRYCG 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 824
BsiHKCI CYCGRG 1 cut(s) 504
BsiSI CCGG 2 cut(s) 150, 425
BslI CCNNNNNNNGG 1 cut(s) 356
BsmAI GTCTC 1 cut(s) 174
BsmBI CGTCTC 1 cut(s) 174
BsmI GAATGC 1 cut(s) 633
BsnI GGCC 2 cut(s) 428, 619
BsoBI CYCGRG 1 cut(s) 504
Bsp119I TTCGAA 1 cut(s) 715
Bsp1286I GDGCHC 2 cut(s) 270, 824
Bsp143I GATC 5 cut(s) 236, 297, 346, 900, 930
BspACI CCGC 7 cut(s) 71, 171, 177, 615, 620, 743, 944
BspANI GGCC 2 cut(s) 428, 619
BspCNI CTCAG 1 cut(s) 573
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 299
BspOI GCTAGC 1 cut(s) 899
BspPI GGATC 4 cut(s) 292, 305, 341, 895
BspT104I TTCGAA 1 cut(s) 715
BspTI CTTAAG 1 cut(s) 461
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 3 cut(s) 756, 792, 923
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 4 cut(s) 115, 116, 134, 623
BssMI GATC 5 cut(s) 236, 297, 346, 900, 930
BssNI GRCGYC 2 cut(s) 5, 183
BssT1I CCWWGG 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 2 cut(s) 51, 426
BstACI GRCGYC 2 cut(s) 5, 183
BstAFI CTTAAG 1 cut(s) 461
BstBI TTCGAA 1 cut(s) 715
BstC8I GCNNGC 4 cut(s) 71, 163, 617, 897
BstDEI CTNAG 1 cut(s) 560
BstDSI CCRYGG 1 cut(s) 623
BstFNI CGCG 1 cut(s) 155
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 5 cut(s) 239, 300, 349, 903, 933
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 5 cut(s) 236, 297, 346, 900, 930
BstMCI CGRYCG 1 cut(s) 429
BstMWI GCNNNNNNNGC 2 cut(s) 612, 896
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 4 cut(s) 232, 444, 888, 928
BstV2I GAAGAC 1 cut(s) 724
BstX2I RGATCY 1 cut(s) 297
BstXI CCANNNNNNTGG 1 cut(s) 661
BstYI RGATCY 1 cut(s) 297
BstZI CGGCCG 1 cut(s) 426
BsuI GTATCC 1 cut(s) 343
BsuRI GGCC 2 cut(s) 428, 619
BtgI CCRYGG 1 cut(s) 623
BtsIMutI CAGTG 3 cut(s) 763, 799, 930
Cac8I GCNNGC 4 cut(s) 71, 163, 617, 897
CfoI GCGC 1 cut(s) 155
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 2 cut(s) 556, 617
CseI GACGC 3 cut(s) 191, 868, 901
CviAII CATG 1 cut(s) 934
DdeI CTNAG 1 cut(s) 560
DpnI GATC 5 cut(s) 238, 299, 348, 902, 932
DpnII GATC 5 cut(s) 236, 297, 346, 900, 930
EaeI YGGCCR 1 cut(s) 426
EagI CGGCCG 1 cut(s) 426
Eam1104I CTCTTC 2 cut(s) 51, 426
EarI CTCTTC 2 cut(s) 51, 426
EciI GGCGGA 1 cut(s) 192
EclXI CGGCCG 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 556
Eco52I CGGCCG 1 cut(s) 426
Eco88I CYCGRG 1 cut(s) 504
EcoO109I RGGNCCY 1 cut(s) 556
EcoRI GAATTC 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 134
EcoT38I GRGCYC 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 1 cut(s) 937
FaiI YATR 8 cut(s) 246, 277, 320, 396, 398, 474, 590, 935
FatI CATG 1 cut(s) 933
FauI CCCGC 2 cut(s) 78, 608
FbaI TGATCA 1 cut(s) 930
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 5 cut(s) 221, 458, 620, 877, 942
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 5 cut(s) 221, 458, 620, 877, 942
FspBI CTAG 4 cut(s) 135, 453, 851, 896
GlaI GCGC 1 cut(s) 154
GluI GCNGC 5 cut(s) 221, 458, 620, 877, 942
GsaI CCCAGC 1 cut(s) 837
GsuI CTGGAG 1 cut(s) 628
HaeIII GGCC 2 cut(s) 428, 619
HapII CCGG 2 cut(s) 150, 425
HgaI GACGC 3 cut(s) 191, 868, 901
HhaI GCGC 1 cut(s) 155
Hin1I GRCGYC 2 cut(s) 5, 183
Hin1II CATG 1 cut(s) 937
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 3 cut(s) 200, 568, 847
HpaII CCGG 2 cut(s) 150, 425
HphI GGTGA 4 cut(s) 27, 195, 272, 356
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 4 cut(s) 211, 521, 846, 884
Hpy188III TCNNGA 7 cut(s) 145, 281, 301, 485, 504, 506, 529
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 4 cut(s) 10, 13, 16, 895
HpyAV CCTTC 4 cut(s) 34, 112, 216, 835
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4IV ACGT 2 cut(s) 376, 499
HpyCH4V TGCA 5 cut(s) 292, 391, 416, 633, 802
HpyF10VI GCNNNNNNNGC 2 cut(s) 612, 896
HpyF3I CTNAG 1 cut(s) 560
HpySE526I ACGT 2 cut(s) 376, 499
Hsp92I GRCGYC 2 cut(s) 5, 183
Hsp92II CATG 1 cut(s) 937
HspAI GCGC 1 cut(s) 153
Ksp22I TGATCA 1 cut(s) 930
Kzo9I GATC 5 cut(s) 236, 297, 346, 900, 930
Lsp1109I GCAGC 4 cut(s) 232, 444, 888, 928
MaeI CTAG 4 cut(s) 135, 453, 851, 896
MaeII ACGT 2 cut(s) 376, 499
MaeIII GTNAC 2 cut(s) 145, 201
MalI GATC 5 cut(s) 238, 299, 348, 902, 932
MboI GATC 5 cut(s) 236, 297, 346, 900, 930
MboII GAAGA 6 cut(s) 38, 246, 377, 443, 571, 729
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 2 cut(s) 270, 824
MluCI AATT 5 cut(s) 212, 534, 769, 805, 859
MlyI GAGTC 2 cut(s) 209, 856
MmeI TCCRAC 1 cut(s) 928
MseI TTAA 4 cut(s) 75, 96, 462, 840
MslI CAYNNNNRTG 1 cut(s) 659
MspA1I CMGCKG 2 cut(s) 564, 606
MspCI CTTAAG 1 cut(s) 461
MspI CCGG 2 cut(s) 150, 425
MspR9I CCNGG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 633
MvaI CCWGG 1 cut(s) 117
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 612, 896
NdeII GATC 5 cut(s) 236, 297, 346, 900, 930
NheI GCTAGC 1 cut(s) 895
NlaIII CATG 1 cut(s) 937
NlaIV GGNNCC 1 cut(s) 299
NmuCI GTSAC 2 cut(s) 145, 201
NspV TTCGAA 1 cut(s) 715
PaeR7I CTCGAG 1 cut(s) 504
PasI CCCWGGG 1 cut(s) 116
PctI GAATGC 1 cut(s) 633
PfeI GAWTC 1 cut(s) 568
PkrI GCNGC 5 cut(s) 222, 459, 621, 878, 943
PleI GAGTC 2 cut(s) 208, 855
PpsI GAGTC 2 cut(s) 208, 855
PpuMI RGGWCCY 1 cut(s) 556
Psp1406I AACGTT 1 cut(s) 499
Psp5II RGGWCCY 1 cut(s) 556
Psp6I CCWGG 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 833
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 299
PspPI GGNCC 2 cut(s) 556, 617
PspPPI RGGWCCY 1 cut(s) 556
PsuI RGATCY 1 cut(s) 297
PvuII CAGCTG 2 cut(s) 564, 606
RseI CAYNNNNRTG 1 cut(s) 659
SalI GTCGAC 1 cut(s) 7
SaqAI TTAA 4 cut(s) 75, 96, 462, 840
SatI GCNGC 5 cut(s) 221, 458, 620, 877, 942
Sau3AI GATC 5 cut(s) 236, 297, 346, 900, 930
Sau96I GGNCC 2 cut(s) 556, 617
SchI GAGTC 2 cut(s) 209, 856
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 2 cut(s) 270, 824
Sfr274I CTCGAG 1 cut(s) 504
SfuI TTCGAA 1 cut(s) 715
SgrDI CGTCGACG 1 cut(s) 7
SinI GGWCC 1 cut(s) 556
SlaI CTCGAG 1 cut(s) 504
SmiMI CAYNNNNRTG 1 cut(s) 659
SmlI CTYRAG 2 cut(s) 461, 504
SmoI CTYRAG 2 cut(s) 461, 504
Sse9I AATT 5 cut(s) 212, 534, 769, 805, 859
SsiI CCGC 7 cut(s) 71, 171, 177, 615, 620, 743, 944
SspMI CTAG 4 cut(s) 135, 453, 851, 896
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 421
TaiI ACGT 2 cut(s) 379, 502
TaqI TCGA 6 cut(s) 8, 127, 505, 530, 582, 715
TasI AATT 5 cut(s) 212, 534, 769, 805, 859
TauI GCSGC 1 cut(s) 622
TfiI GAWTC 1 cut(s) 568
Tru1I TTAA 4 cut(s) 75, 96, 462, 840
Tru9I TTAA 4 cut(s) 75, 96, 462, 840
TscAI CASTG 3 cut(s) 763, 799, 930
TseFI GTSAC 2 cut(s) 145, 201
TseI GCWGC 4 cut(s) 220, 457, 876, 941
Tsp45I GTSAC 2 cut(s) 145, 201
TspDTI ATGAA 2 cut(s) 772, 817
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 3 cut(s) 763, 799, 930
Vha464I CTTAAG 1 cut(s) 461
VpaK11BI GGWCC 1 cut(s) 556
XapI RAATTY 4 cut(s) 212, 769, 805, 859
XhoI CTCGAG 1 cut(s) 504
XmaJI CCTAGG 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 4 cut(s) 135, 453, 851, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.