Rh2DG694700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
91076085 .. 91078877
2793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG694700.1

Sequence Viewer

Length: 1707 bp
ATGATTAGGAGGCATGGCGTATGGAGAAGGAGACGAGTTTCTGTAGGGTCAATTCTGATATTCGGTGCAATTTTTGCCGGAATCGGATTGCTGATTCTCAACTTAAGACCTGTCCATGATGATTCTCCAACGACAACGAGCCGCGATTTCCCTGTTGAAATTCACGACTCGGTTTCGATTTCGGAGTCGGAGTCGGAGTCTGAGAGCGGTGCTGGTGCTGGAGTTGGGGTTGAGTCGGAGACTCGGAGCAGCGAGAGTAAGGGTAAGAGAAAATCGAGCTCGTGTGCTTCGGTGGAAGGGATGGGAAAGGAGTTTGAAGGAGGGTTTTGGGATGAAAGTTTCAGAGTGAGGAAACTTATTCAAAATCACTTTGAATTGAATGGTGCTTCGAGGGTGCGGAATCTTCCTCCACAACAGTTTTGCCAGCATGGTTTTGTGCTTGGCAAATCAGCAGAGGCAGGCTTCGGGAATGAAATGTACAAGATCTTAAGTGGTGCAGCACTGAGTGTGATGTTAAACCGGTCCCTGATTATTGGGCAAACCAGGGGAAAATTCCCTTTTGGGGATTACATTTCTTATTCCAACCTTTCTTTTACAATGAAAGAAATCAAGCATCTGTGGAGACTTAATAAATGTGTAAAGAAGTATGGAAGGCAACTGATCATGAGGACTGATGACTTTGAGAAACCAATGAAGACAAATGTCATGTGTAGCAACTGGAGGAGATGGAAGCAACCTATTATATGGTTCCAAGGTACAAATGACGCTGTGGCAGCCCAGTTTTTCTTGAAGAATATACATCCAGAGATGAGGAAGGCTGCTTCTAATTTATTTGGAAAGCCAGAGGCTCTCCATTCTCGGCCTAATGTATTTGGAGAGCTGATGAGAGTGCTTATATCTCCTTCTGAAGATGTTGAGCAAGCAATCAATTGGGTTATCGGTGGAGTGGATCCTGATATTTCTCTGCACATGCGAATGCTCATGAATAGGTCGGTGAGAGCTGCACAGGCAGCACTAAACTGCATCAGAAAAGCTGTGCGCAATCTTGGTAAAGCCTCAAGGCCCAGGGTGGTCTTAGTGTCAGATACCCCCTCTCTTATAAAAAGTATTACACCGAATATAAGCAAGTTTGCTGAGGTAATTCATTTTGATTACGAACTTTTCAAAGGAAATATATCTGACAGCGGTAAAAGATTGCGAAGTTTAGAATTTAGAGCAAAAGATTGGGGCCCAGCACCCAGATGGGTCGCCTTTGTGGACTTCTTTCTTGCATCACGGGCAAAACATGCTGTTGTGTCTGGTGCTCACAGGCGTGTTGGGACTACATATGCTCAGTTAATTGCAGCACTGGCTGCAGCAAACAATCTAGGGGACAGTCCAACTGGTTCGAATTTTTCGTTCTTAAGCAGCTTTCAAAGTGATTTGTTGAGAGAAGGTTTAAGATTTCAGATTGGTTGGGGACATGTGTGGAACAGATTTGCAGGTCCCCTTAGTTGTCACAACCAGCATAACCAATGTGCTTTCACACCACTTCTCCCTCCTGCATGGTGGGATGGTCTTTGGCAATCTCCACTAACAAGGGATATTAATAGGTTGGCAGACTACGGCATCCAGTTAACTGGTTTTGGCACCATTGATGAAACACATCTTCAGTCTTTTTGTAGCTCAAAGAAAGTTGCTGTGAAAACTATTCCGTACATATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

568

Amino Acids

63.61

Weight (kDa)

9.81

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7810 PF25102 91 - 564 1.8e-264 Family of unknown function (DUF7810)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1100
Acc16I TGCGCA 1 cut(s) 1040
Acc36I ACCTGC 1 cut(s) 1472
AccB1I GGYRCC 1 cut(s) 1628
AccBSI CCGCTC 1 cut(s) 207
AccII CGCG 1 cut(s) 144
AciI CCGC 4 cut(s) 142, 207, 397, 1185
AclWI GGATC 2 cut(s) 944, 957
AcsI RAATTY 4 cut(s) 159, 551, 1208, 1390
AcuI CTGAAG 2 cut(s) 927, 1634
AdeI CACNNNGTG 1 cut(s) 506
AfaI GTAC 3 cut(s) 479, 757, 1697
AfiI CCNNNNNNNGG 1 cut(s) 562
AflII CTTAAG 3 cut(s) 103, 487, 1402
AflIII ACRYGT 1 cut(s) 1462
AgeI ACCGGT 1 cut(s) 519
AgsI TTSAA 8 cut(s) 158, 317, 362, 374, 379, 790, 1165, 1415
AjnI CCWGG 2 cut(s) 542, 1064
AleI CACNNNNGTG 1 cut(s) 1311
AluBI AGCT 6 cut(s) 279, 880, 1001, 1034, 1410, 1665
AluI AGCT 6 cut(s) 279, 880, 1001, 1034, 1410, 1665
Alw21I GWGCWC 2 cut(s) 281, 1306
Alw26I GTCTC 3 cut(s) 25, 233, 616
AlwI GGATC 2 cut(s) 944, 957
AoxI GGCC 3 cut(s) 860, 1061, 1228
ApaI GGGCCC 1 cut(s) 1232
ApoI RAATTY 4 cut(s) 159, 551, 1208, 1390
AseI ATTAAT 1 cut(s) 1587
AsiGI ACCGGT 1 cut(s) 519
AspLEI GCGC 1 cut(s) 1041
AspS9I GGNCC 5 cut(s) 522, 1062, 1228, 1229, 1484
AsuHPI GGTGA 1 cut(s) 1006
AsuII TTCGAA 1 cut(s) 1388
AvaII GGWCC 2 cut(s) 522, 1484
BaeGI GKGCMC 1 cut(s) 1232
BamHI GGATCC 1 cut(s) 949
BanI GGYRCC 1 cut(s) 1628
BanII GRGCYC 2 cut(s) 281, 1232
BauI CACGAG 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 701
Bbv12I GWGCWC 2 cut(s) 281, 1306
BbvCI CCTCAGC 1 cut(s) 1134
BccI CCATC 4 cut(s) 295, 720, 1236, 1547
BceAI ACGGC 1 cut(s) 1621
BciT130I CCWGG 2 cut(s) 544, 1066
BclI TGATCA 1 cut(s) 660
BcoDI GTCTC 3 cut(s) 25, 233, 616
BfaI CTAG 1 cut(s) 1367
BfmI CTRYAG 2 cut(s) 42, 1353
BfrI CTTAAG 3 cut(s) 103, 487, 1402
BfuAI ACCTGC 1 cut(s) 1472
BglII AGATCT 1 cut(s) 483
Bme1390I CCNGG 2 cut(s) 544, 1066
Bme18I GGWCC 2 cut(s) 522, 1484
BmgT120I GGNCC 5 cut(s) 522, 1062, 1228, 1229, 1484
BmiI GGNNCC 7 cut(s) 524, 749, 951, 1229, 1230, 1486, 1630
BmrFI CCNGG 2 cut(s) 544, 1066
BmrI ACTGGG 1 cut(s) 772
BmsI GCATC 4 cut(s) 622, 1032, 1280, 1617
BmuI ACTGGG 1 cut(s) 772
BoxI GACNNNNGTC 1 cut(s) 701
BpiI GAAGAC 1 cut(s) 701
BpmI CTGGAG 2 cut(s) 240, 739
Bpu10I CCTNAGC 1 cut(s) 1134
Bpu14I TTCGAA 1 cut(s) 1388
BpuEI CTTGAG 1 cut(s) 1042
BsaJI CCNNGG 4 cut(s) 543, 751, 1064, 1065
BsaWI WCCGGW 1 cut(s) 519
BsaXI ACNNNNNCTCC 8 cut(s) 176, 182, 206, 212, 213, 243, 1518, 1548
Bsc4I CCNNNNNNNGG 1 cut(s) 562
Bse118I RCCGGY 1 cut(s) 519
Bse1I ACTGG 6 cut(s) 722, 778, 1353, 1387, 1612, 1624
BseBI CCWGG 2 cut(s) 544, 1066
BseDI CCNNGG 4 cut(s) 543, 751, 1064, 1065
BseGI GGATG 5 cut(s) 306, 337, 799, 1558, 1608
BseLI CCNNNNNNNGG 1 cut(s) 562
BseMII CTCAG 4 cut(s) 192, 494, 1125, 1346
BseNI ACTGG 6 cut(s) 722, 778, 1353, 1387, 1612, 1624
BseRI GAGGAG 1 cut(s) 736
BseSI GKGCMC 1 cut(s) 1232
BseYI CCCAGC 1 cut(s) 1231
BsgI GTGCAG 3 cut(s) 516, 950, 987
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 3 cut(s) 862, 1063, 1230
BshNI GGYRCC 1 cut(s) 1628
BshTI ACCGGT 1 cut(s) 519
BsiHKAI GWGCWC 2 cut(s) 281, 1306
BsiSI CCGG 2 cut(s) 78, 520
BslFI GGGAC 5 cut(s) 508, 1333, 1385, 1470, 1473
BslI CCNNNNNNNGG 1 cut(s) 562
BsmAI GTCTC 3 cut(s) 25, 233, 616
BsmBI CGTCTC 1 cut(s) 25
BsmFI GGGAC 5 cut(s) 508, 1333, 1385, 1470, 1473
BsmI GAATGC 1 cut(s) 981
BsnI GGCC 3 cut(s) 862, 1063, 1230
Bsp119I TTCGAA 1 cut(s) 1388
Bsp120I GGGCCC 1 cut(s) 1228
Bsp1286I GDGCHC 3 cut(s) 281, 1232, 1306
Bsp1407I TGTACA 1 cut(s) 477
Bsp143I GATC 3 cut(s) 483, 660, 949
BspACI CCGC 4 cut(s) 142, 207, 397, 1185
BspANI GGCC 3 cut(s) 862, 1063, 1230
BspCNI CTCAG 4 cut(s) 193, 495, 1126, 1345
BspFNI CGCG 1 cut(s) 144
BspHI TCATGA 2 cut(s) 663, 981
BspLI GGNNCC 7 cut(s) 524, 749, 951, 1229, 1230, 1486, 1630
BspMAI CTGCAG 1 cut(s) 1357
BspMI ACCTGC 1 cut(s) 1472
BspPI GGATC 2 cut(s) 944, 957
BspT104I TTCGAA 1 cut(s) 1388
BspT107I GGYRCC 1 cut(s) 1628
BspTI CTTAAG 3 cut(s) 103, 487, 1402
BsrBI CCGCTC 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 519
BsrGI TGTACA 1 cut(s) 477
BsrI ACTGG 6 cut(s) 722, 778, 1353, 1387, 1612, 1624
BssAI RCCGGY 1 cut(s) 519
BssECI CCNNGG 4 cut(s) 543, 751, 1064, 1065
BssMI GATC 3 cut(s) 483, 660, 949
BssSI CACGAG 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 751
Bst2BI CACGAG 1 cut(s) 280
Bst2UI CCWGG 2 cut(s) 544, 1066
Bst4CI ACNGT 2 cut(s) 417, 1376
BstAFI CTTAAG 3 cut(s) 103, 487, 1402
BstAPI GCANNNNNTGC 3 cut(s) 74, 1286, 1352
BstAUI TGTACA 1 cut(s) 477
BstBI TTCGAA 1 cut(s) 1388
BstC8I GCNNGC 3 cut(s) 425, 460, 921
BstDEI CTNAG 6 cut(s) 201, 503, 1075, 1134, 1332, 1490
BstF5I GGATG 5 cut(s) 306, 337, 799, 1558, 1608
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 1041
BstKTI GATC 3 cut(s) 486, 663, 952
BstMAI GTCTC 3 cut(s) 25, 233, 616
BstMBI GATC 3 cut(s) 483, 660, 949
BstMWI GCNNNNNNNGC 8 cut(s) 74, 773, 1007, 1010, 1277, 1286, 1349, 1352
BstNI CCWGG 2 cut(s) 544, 1066
BstNSI RCATGY 3 cut(s) 973, 1289, 1466
BstPAI GACNNNNGTC 1 cut(s) 701
BstSCI CCNGG 2 cut(s) 542, 1064
BstSFI CTRYAG 2 cut(s) 42, 1353
BstSLI GKGCMC 1 cut(s) 1232
BstUI CGCG 1 cut(s) 144
BstV2I GAAGAC 1 cut(s) 701
BstX2I RGATCY 2 cut(s) 483, 949
BstXI CCANNNNNNTGG 1 cut(s) 1619
BstYI RGATCY 2 cut(s) 483, 949
BsuRI GGCC 3 cut(s) 862, 1063, 1230
BtsCI GGATG 5 cut(s) 306, 337, 799, 1558, 1608
BtsIMutI CAGTG 2 cut(s) 500, 1346
BveI ACCTGC 1 cut(s) 1472
Cac8I GCNNGC 3 cut(s) 425, 460, 921
CciI TCATGA 2 cut(s) 663, 981
CfoI GCGC 1 cut(s) 1041
Cfr10I RCCGGY 1 cut(s) 519
Cfr13I GGNCC 5 cut(s) 522, 1062, 1228, 1229, 1484
CseI GACGC 1 cut(s) 773
Csp6I GTAC 3 cut(s) 478, 756, 1696
CspAI ACCGGT 1 cut(s) 519
CviQI GTAC 3 cut(s) 478, 756, 1696
DdeI CTNAG 6 cut(s) 201, 503, 1075, 1134, 1332, 1490
DpnI GATC 3 cut(s) 485, 662, 951
DpnII GATC 3 cut(s) 483, 660, 949
DraIII CACNNNGTG 1 cut(s) 506
Ecl136II GAGCTC 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 751
Eco24I GRGCYC 2 cut(s) 281, 1232
Eco47I GGWCC 2 cut(s) 522, 1484
Eco53kI GAGCTC 1 cut(s) 279
Eco57I CTGAAG 2 cut(s) 927, 1634
EcoICRI GAGCTC 1 cut(s) 279
EcoO109I RGGNCCY 2 cut(s) 1228, 1484
EcoRII CCWGG 2 cut(s) 542, 1064
EcoT14I CCWWGG 1 cut(s) 751
EcoT38I GRGCYC 2 cut(s) 281, 1232
ErhI CCWWGG 1 cut(s) 751
Esp3I CGTCTC 1 cut(s) 25
FaqI GGGAC 5 cut(s) 508, 1333, 1385, 1470, 1473
FauNDI CATATG 1 cut(s) 1327
FbaI TGATCA 1 cut(s) 660
FokI GGATG 5 cut(s) 313, 344, 786, 1565, 1595
FriOI GRGCYC 2 cut(s) 281, 1232
FspBI CTAG 1 cut(s) 1367
FspI TGCGCA 1 cut(s) 1040
GlaI GCGC 1 cut(s) 1040
GsaI CCCAGC 1 cut(s) 1235
GsuI CTGGAG 2 cut(s) 240, 739
HaeIII GGCC 3 cut(s) 862, 1063, 1230
HapII CCGG 2 cut(s) 78, 520
HgaI GACGC 1 cut(s) 773
HhaI GCGC 1 cut(s) 1041
Hin6I GCGC 1 cut(s) 1039
HinP1I GCGC 1 cut(s) 1039
HincII GTYRAC 1 cut(s) 1617
HindII GTYRAC 1 cut(s) 1617
HpaI GTTAAC 1 cut(s) 1617
HpaII CCGG 2 cut(s) 78, 520
HphI GGTGA 1 cut(s) 1006
Hpy166II GTNNAC 2 cut(s) 1258, 1617
Hpy188III TCNNGA 7 cut(s) 164, 466, 664, 787, 803, 953, 982
Hpy8I GTNNAC 2 cut(s) 1258, 1617
HpyAV CCTTC 7 cut(s) 21, 290, 311, 645, 808, 912, 1427
HpyCH4III ACNGT 2 cut(s) 417, 1376
HpyF10VI GCNNNNNNNGC 8 cut(s) 74, 773, 1007, 1010, 1277, 1286, 1349, 1352
HpyF3I CTNAG 6 cut(s) 201, 503, 1075, 1134, 1332, 1490
HspAI GCGC 1 cut(s) 1039
Ksp22I TGATCA 1 cut(s) 660
KspAI GTTAAC 1 cut(s) 1617
Kzo9I GATC 3 cut(s) 483, 660, 949
LmnI GCTCC 1 cut(s) 246
LweI GCATC 4 cut(s) 622, 1032, 1280, 1617
MaeI CTAG 1 cut(s) 1367
MaeIII GTNAC 1 cut(s) 1496
MalI GATC 3 cut(s) 485, 662, 951
MbiI CCGCTC 1 cut(s) 207
MboI GATC 3 cut(s) 483, 660, 949
MboII GAAGA 5 cut(s) 395, 706, 802, 920, 1640
MfeI CAATTG 1 cut(s) 928
MflI RGATCY 2 cut(s) 483, 949
MhlI GDGCHC 3 cut(s) 281, 1232, 1306
MlyI GAGTC 6 cut(s) 161, 194, 200, 206, 235, 242
MmeI TCCRAC 6 cut(s) 152, 168, 174, 216, 606, 1403
MseI TTAA 9 cut(s) 104, 488, 515, 627, 1337, 1403, 1439, 1587, 1616
MslI CAYNNNNRTG 3 cut(s) 974, 1240, 1311
MspA1I CMGCKG 1 cut(s) 1185
MspCI CTTAAG 3 cut(s) 103, 487, 1402
MspI CCGG 2 cut(s) 78, 520
MspR9I CCNGG 2 cut(s) 544, 1066
MunI CAATTG 1 cut(s) 928
Mva1269I GAATGC 1 cut(s) 981
MvaI CCWGG 2 cut(s) 544, 1066
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 8 cut(s) 74, 773, 1007, 1010, 1277, 1286, 1349, 1352
NdeI CATATG 1 cut(s) 1327
NdeII GATC 3 cut(s) 483, 660, 949
NlaIV GGNNCC 7 cut(s) 524, 749, 951, 1229, 1230, 1486, 1630
NmeAIII GCCGAG 1 cut(s) 838
NmuCI GTSAC 1 cut(s) 1496
NsbI TGCGCA 1 cut(s) 1040
NspI RCATGY 3 cut(s) 973, 1289, 1466
NspV TTCGAA 1 cut(s) 1388
OliI CACNNNNGTG 1 cut(s) 1311
PagI TCATGA 2 cut(s) 663, 981
PasI CCCWGGG 1 cut(s) 1065
PciI ACATGT 1 cut(s) 1462
PcsI WCGNNNNNNNCGW 1 cut(s) 1394
PctI GAATGC 1 cut(s) 981
PfeI GAWTC 4 cut(s) 81, 94, 122, 400
PinAI ACCGGT 1 cut(s) 519
PleI GAGTC 6 cut(s) 161, 193, 199, 205, 235, 241
PpsI GAGTC 6 cut(s) 161, 193, 199, 205, 235, 241
PpuMI RGGWCCY 1 cut(s) 1484
PscI ACATGT 1 cut(s) 1462
PshAI GACNNNNGTC 1 cut(s) 701
PshBI ATTAAT 1 cut(s) 1587
PsiI TTATAA 1 cut(s) 1100
Psp124BI GAGCTC 1 cut(s) 281
Psp5II RGGWCCY 1 cut(s) 1484
Psp6I CCWGG 2 cut(s) 542, 1064
PspFI CCCAGC 1 cut(s) 1231
PspGI CCWGG 2 cut(s) 542, 1064
PspN4I GGNNCC 7 cut(s) 524, 749, 951, 1229, 1230, 1486, 1630
PspOMI GGGCCC 1 cut(s) 1228
PspPI GGNCC 5 cut(s) 522, 1062, 1228, 1229, 1484
PspPPI RGGWCCY 1 cut(s) 1484
PstI CTGCAG 1 cut(s) 1357
PsuI RGATCY 2 cut(s) 483, 949
RsaI GTAC 3 cut(s) 479, 757, 1697
RsaNI GTAC 3 cut(s) 478, 756, 1696
RseI CAYNNNNRTG 3 cut(s) 974, 1240, 1311
SacI GAGCTC 1 cut(s) 281
SaqAI TTAA 9 cut(s) 104, 488, 515, 627, 1337, 1403, 1439, 1587, 1616
Sau3AI GATC 3 cut(s) 483, 660, 949
Sau96I GGNCC 5 cut(s) 522, 1062, 1228, 1229, 1484
SchI GAGTC 6 cut(s) 161, 194, 200, 206, 235, 242
ScrFI CCNGG 2 cut(s) 544, 1066
SduI GDGCHC 3 cut(s) 281, 1232, 1306
SfaNI GCATC 4 cut(s) 622, 1032, 1280, 1617
SfcI CTRYAG 2 cut(s) 42, 1353
SfuI TTCGAA 1 cut(s) 1388
SinI GGWCC 2 cut(s) 522, 1484
SmiMI CAYNNNNRTG 3 cut(s) 974, 1240, 1311
SmlI CTYRAG 4 cut(s) 103, 487, 1057, 1402
SmoI CTYRAG 4 cut(s) 103, 487, 1057, 1402
SsiI CCGC 4 cut(s) 142, 207, 397, 1185
SspMI CTAG 1 cut(s) 1367
SstI GAGCTC 1 cut(s) 281
StyD4I CCNGG 2 cut(s) 542, 1064
StyI CCWWGG 1 cut(s) 751
TaaI ACNGT 2 cut(s) 417, 1376
TaqI TCGA 4 cut(s) 176, 275, 389, 1388
TatI WGTACW 1 cut(s) 477
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 4 cut(s) 81, 94, 122, 400
Tru1I TTAA 9 cut(s) 104, 488, 515, 627, 1337, 1403, 1439, 1587, 1616
Tru9I TTAA 9 cut(s) 104, 488, 515, 627, 1337, 1403, 1439, 1587, 1616
TscAI CASTG 2 cut(s) 507, 1353
TseFI GTSAC 1 cut(s) 1496
Tsp45I GTSAC 1 cut(s) 1496
TspDTI ATGAA 7 cut(s) 348, 486, 614, 707, 998, 1133, 1653
TspGWI ACGGA 1 cut(s) 1683
TspRI CASTG 2 cut(s) 507, 1353
Vha464I CTTAAG 3 cut(s) 103, 487, 1402
VpaK11BI GGWCC 2 cut(s) 522, 1484
VspI ATTAAT 1 cut(s) 1587
XapI RAATTY 4 cut(s) 159, 551, 1208, 1390
XceI RCATGY 3 cut(s) 973, 1289, 1466
XcmI CCANNNNNNNNNTGG 1 cut(s) 1239
XspI CTAG 1 cut(s) 1367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.