Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005445

Physical Location & Seq

Genomic Coordinates Reverse (-)

662246 .. 664754

Gene Structure 2509 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1010700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGAAGTGATGACTTTGAGAAGCCAGCACAGACCAATGTTCTTTGTAGCAACTGGATAGAATGGAAGCAACCCATTATATGGTTCCAAGGGACGAATGATGCTGTGGCAGCCCAGTTTTTCTTGAAGAATATCCACCCTGGGATGAGGAATGCTGCTTCTACTTTATTTGGGAAGCCAGAGGATCTCCATTCTCGGCCTACAGTCAATTGGGTTCTTGGTGGAGCGGAACCTGATATTTCACTGCACATGCGAATGCTCATGAATAAGTCTGTGAGAGCTGCACAGGCAGCATTGAATTGCATAAAAAAATCCATGCACAATCTTGGCAAGTCCCCAAGACCTAGGGTGGTGCTAGTGTCAGATAATCCCTCTCTTGTGAAAAGTATTACTCCAAATATAAGTAAATTTGCAGAGGTTATTCATTTTGATTATGAACTATTCAAAGGAAATATATCCGATGGCCGTAAAGGATTGCACAGTTTAGATTTTAGAGTGAAGGATTGGGGTCCAGCACCTAGATGGGTTGCTTTTGTGGACTTCTTTCTTGCATCGCGTGCAAAACATGCTGTTGTCTCCGGGGCTCACAGGCGTGTTGGGACTACCTATGCTCAGTTAATTGCGGCACTGGCTGCAGCAAACAATCTTGGCAACGACCCAACCGGTTCAAGTTTTGCATTCTTAAGCAGCTTCCAAGGTGATTTGTTGAGAGAAGGTCTAAGGTTTCAGATCGGTTGGGGGCATGTGTGGAACAGATTTGCTGGTCCACTCAGTTGCCATAGCCAGCCCAATCAGTGTGCTTTCACGCCACTTCTCCCTCCGGCTTGGTGGGATGGTCTTTGGCAATCCCCGCTTCCTAGGGATATCAAGAGGCTGGCGGAGTACGGGATTGAGTTATCCGGTTTTGGCACGATCGACGAAAATCATCTTCGGTCTTTTTGTAGTTCAAGGAAGGTGGTTGTGAAAACTATTCCGTTCCTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

36.65

Weight (kDa)

9.62

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7810	PF25102	1 - 69	1.4e-30	Family of unknown function (DUF7810)
DUF7810	PF25102	68 - 325	2e-135	Family of unknown function (DUF7810)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26950
fragaria_vesca	FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950
malus_domestica	MD09G1007000.v1.1 MD17G1010700.v1.1
prunus_persica	Prupe.3G297400_v2.0.a1 Prupe.3G310100_v2.0.a1 Prupe.3G310100_v2.0.a1
pyrus_communis	pycom111g00520 pycom17g00550
rosa_chinensis	RchiOBHm_Chr2g0176111
rosa_laevigata	RLG00000022382
rosa_multiflora	Rmu_co8462439.1_g000001 Rmu_sc0041131.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076760
rosa_rugosa	Rorug02G0590500 Rorug02G0590600
rosa_samantha	Rh2AG669400 Rh2BG681000 Rh2CG643900 Rh2DG694700
rosa_wichuraiana	Rw2G054910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	81
AccBSI	CCGCTC	1 cut(s)	227
AccII	CGCG	1 cut(s)	556
AciI	CCGC	4 cut(s)	227, 623, 851, 878
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	463
AcsI	RAATTY	1 cut(s)	407
AfaI	GTAC	1 cut(s)	884
AfiI	CCNNNNNNNGG	1 cut(s)	81
AflII	CTTAAG	1 cut(s)	682
AgeI	ACCGGT	1 cut(s)	662
AgsI	TTSAA	5 cut(s)	127, 298, 445, 669, 948
AjnI	CCWGG	1 cut(s)	139
AleI	CACNNNNGTG	1 cut(s)	591
AluBI	AGCT	2 cut(s)	281, 690
AluI	AGCT	2 cut(s)	281, 690
Alw26I	GTCTC	1 cut(s)	580
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	2 cut(s)	197, 463
ApeKI	GCWGC	7 cut(s)	110, 155, 281, 290, 632, 635, 687
ApoI	RAATTY	1 cut(s)	407
AsiGI	ACCGGT	1 cut(s)	662
AspA2I	CCTAGG	2 cut(s)	344, 857
AspS9I	GGNCC	2 cut(s)	509, 764
AsuC2I	CCSGG	1 cut(s)	580
AsuHPI	GGTGA	1 cut(s)	710
AvaII	GGWCC	2 cut(s)	509, 764
AvrII	CCTAGG	2 cut(s)	344, 857
BanII	GRGCYC	1 cut(s)	586
BbvI	GCAGC	7 cut(s)	122, 142, 268, 302, 619, 647, 699
BccI	CCATC	3 cut(s)	455, 516, 827
BceAI	ACGGC	1 cut(s)	450
BciT130I	CCWGG	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	580
BcoDI	GTCTC	1 cut(s)	580
BfaI	CTAG	4 cut(s)	345, 356, 519, 858
BfmI	CTRYAG	2 cut(s)	201, 633
BfrI	CTTAAG	1 cut(s)	682
BisI	GCNGC	8 cut(s)	111, 156, 282, 291, 624, 633, 636, 688
BlnI	CCTAGG	2 cut(s)	344, 857
BlsI	GCNGC	8 cut(s)	112, 157, 283, 292, 625, 634, 637, 689
Bme1390I	CCNGG	2 cut(s)	141, 580
Bme18I	GGWCC	2 cut(s)	509, 764
BmgT120I	GGNCC	2 cut(s)	509, 764
BmiI	GGNNCC	3 cut(s)	86, 231, 510
BmrFI	CCNGG	2 cut(s)	141, 580
BmrI	ACTGGG	1 cut(s)	109
BmsI	GCATC	2 cut(s)	91, 560
BmuI	ACTGGG	1 cut(s)	109
BpuMI	CCSGG	1 cut(s)	580
BsaJI	CCNNGG	7 cut(s)	88, 139, 140, 344, 579, 694, 857
BsaWI	WCCGGW	2 cut(s)	662, 899
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse118I	RCCGGY	1 cut(s)	662
Bse1I	ACTGG	3 cut(s)	59, 115, 633
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	7 cut(s)	88, 139, 140, 344, 579, 694, 857
BseGI	GGATG	2 cut(s)	150, 838
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMII	CTCAG	2 cut(s)	626, 784
BseNI	ACTGG	3 cut(s)	59, 115, 633
BseXI	GCAGC	7 cut(s)	122, 142, 268, 302, 619, 647, 699
BsgI	GTGCAG	2 cut(s)	230, 267
Bsh1236I	CGCG	1 cut(s)	556
Bsh1285I	CGRYCG	1 cut(s)	915
BshFI	GGCC	2 cut(s)	199, 465
BshTI	ACCGGT	1 cut(s)	662
BsiEI	CGRYCG	1 cut(s)	915
BsiSI	CCGG	4 cut(s)	579, 663, 821, 900
BslFI	GGGAC	3 cut(s)	106, 319, 613
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	580
BsmFI	GGGAC	3 cut(s)	106, 319, 613
BsmI	GAATGC	3 cut(s)	157, 261, 677
BsnI	GGCC	2 cut(s)	199, 465
Bsp1286I	GDGCHC	1 cut(s)	586
Bsp143I	GATC	3 cut(s)	184, 729, 912
BspACI	CCGC	4 cut(s)	227, 623, 851, 878
BspANI	GGCC	2 cut(s)	199, 465
BspCNI	CTCAG	2 cut(s)	625, 783
BspFNI	CGCG	1 cut(s)	556
BspHI	TCATGA	1 cut(s)	261
BspLI	GGNNCC	3 cut(s)	86, 231, 510
BspMAI	CTGCAG	1 cut(s)	637
BspPI	GGATC	1 cut(s)	192
BspTI	CTTAAG	1 cut(s)	682
BsrBI	CCGCTC	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	662
BsrI	ACTGG	3 cut(s)	59, 115, 633
BssAI	RCCGGY	1 cut(s)	662
BssECI	CCNNGG	7 cut(s)	88, 139, 140, 344, 579, 694, 857
BssMI	GATC	3 cut(s)	184, 729, 912
BssT1I	CCWWGG	4 cut(s)	88, 344, 694, 857
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	205, 482
BstAFI	CTTAAG	1 cut(s)	682
BstAPI	GCANNNNNTGC	3 cut(s)	557, 566, 632
BstC8I	GCNNGC	4 cut(s)	27, 558, 785, 876
BstDEI	CTNAG	3 cut(s)	612, 719, 770
BstF5I	GGATG	2 cut(s)	150, 838
BstFNI	CGCG	1 cut(s)	556
BstKTI	GATC	3 cut(s)	187, 732, 915
BstMAI	GTCTC	1 cut(s)	580
BstMBI	GATC	3 cut(s)	184, 729, 912
BstMCI	CGRYCG	1 cut(s)	915
BstMWI	GCNNNNNNNGC	8 cut(s)	110, 287, 290, 557, 566, 629, 632, 850
BstNI	CCWGG	1 cut(s)	141
BstNSI	RCATGY	3 cut(s)	253, 569, 746
BstSCI	CCNGG	2 cut(s)	139, 578
BstSFI	CTRYAG	2 cut(s)	201, 633
BstUI	CGCG	1 cut(s)	556
BstV1I	GCAGC	7 cut(s)	122, 142, 268, 302, 619, 647, 699
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	199, 465
BtgZI	GCGATG	1 cut(s)	537
BtsCI	GGATG	2 cut(s)	150, 838
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	3 cut(s)	242, 626, 800
Cac8I	GCNNGC	4 cut(s)	27, 558, 785, 876
CciI	TCATGA	1 cut(s)	261
Cfr10I	RCCGGY	1 cut(s)	662
Cfr13I	GGNCC	2 cut(s)	509, 764
Csp6I	GTAC	1 cut(s)	883
CspAI	ACCGGT	1 cut(s)	662
CspCI	CAANNNNNGTGG	2 cut(s)	936, 971
CviAII	CATG	5 cut(s)	250, 262, 316, 566, 743
CviQI	GTAC	1 cut(s)	883
DdeI	CTNAG	3 cut(s)	612, 719, 770
DpnI	GATC	3 cut(s)	186, 731, 914
DpnII	GATC	3 cut(s)	184, 729, 912
EaeI	YGGCCR	1 cut(s)	463
EciI	GGCGGA	1 cut(s)	893
Eco130I	CCWWGG	4 cut(s)	88, 344, 694, 857
Eco24I	GRGCYC	1 cut(s)	586
Eco32I	GATATC	1 cut(s)	865
Eco47I	GGWCC	2 cut(s)	509, 764
EcoRII	CCWGG	1 cut(s)	139
EcoRV	GATATC	1 cut(s)	865
EcoT14I	CCWWGG	4 cut(s)	88, 344, 694, 857
EcoT38I	GRGCYC	1 cut(s)	586
ErhI	CCWWGG	4 cut(s)	88, 344, 694, 857
FaeI	CATG	5 cut(s)	253, 265, 319, 569, 746
FaqI	GGGAC	3 cut(s)	106, 319, 613
FatI	CATG	5 cut(s)	249, 261, 315, 565, 742
FauI	CCCGC	1 cut(s)	858
Fnu4HI	GCNGC	8 cut(s)	111, 156, 282, 291, 624, 633, 636, 688
FokI	GGATG	2 cut(s)	157, 845
FriOI	GRGCYC	1 cut(s)	586
Fsp4HI	GCNGC	8 cut(s)	111, 156, 282, 291, 624, 633, 636, 688
FspBI	CTAG	4 cut(s)	345, 356, 519, 858
GluI	GCNGC	8 cut(s)	111, 156, 282, 291, 624, 633, 636, 688
HaeIII	GGCC	2 cut(s)	199, 465
HapII	CCGG	4 cut(s)	579, 663, 821, 900
Hin1II	CATG	5 cut(s)	253, 265, 319, 569, 746
HpaII	CCGG	4 cut(s)	579, 663, 821, 900
HphI	GGTGA	1 cut(s)	710
Hpy166II	GTNNAC	2 cut(s)	538, 767
Hpy188I	TCNGA	3 cut(s)	364, 460, 729
Hpy188III	TCNNGA	3 cut(s)	124, 262, 868
Hpy8I	GTNNAC	2 cut(s)	538, 767
Hpy99I	CGWCG	1 cut(s)	920
HpyAV	CCTTC	3 cut(s)	493, 707, 946
HpyCH4III	ACNGT	2 cut(s)	205, 482
HpyF10VI	GCNNNNNNNGC	8 cut(s)	110, 287, 290, 557, 566, 629, 632, 850
HpyF3I	CTNAG	3 cut(s)	612, 719, 770
Hsp92II	CATG	5 cut(s)	253, 265, 319, 569, 746
Kzo9I	GATC	3 cut(s)	184, 729, 912
LmnI	GCTCC	1 cut(s)	224
Lsp1109I	GCAGC	7 cut(s)	122, 142, 268, 302, 619, 647, 699
LweI	GCATC	2 cut(s)	91, 560
MaeI	CTAG	4 cut(s)	345, 356, 519, 858
MalI	GATC	3 cut(s)	186, 731, 914
MbiI	CCGCTC	1 cut(s)	227
MboI	GATC	3 cut(s)	184, 729, 912
MboII	GAAGA	2 cut(s)	139, 920
MfeI	CAATTG	1 cut(s)	208
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	586
MluCI	AATT	4 cut(s)	208, 298, 407, 618
MnlI	CCTC	6 cut(s)	141, 175, 382, 409, 828, 864
MseI	TTAA	2 cut(s)	617, 683
MslI	CAYNNNNRTG	3 cut(s)	254, 520, 591
MspCI	CTTAAG	1 cut(s)	682
MspI	CCGG	4 cut(s)	579, 663, 821, 900
MspR9I	CCNGG	2 cut(s)	141, 580
MunI	CAATTG	1 cut(s)	208
Mva1269I	GAATGC	3 cut(s)	157, 261, 677
MvaI	CCWGG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	556
MwoI	GCNNNNNNNGC	8 cut(s)	110, 287, 290, 557, 566, 629, 632, 850
NciI	CCSGG	1 cut(s)	580
NdeII	GATC	3 cut(s)	184, 729, 912
NlaIII	CATG	5 cut(s)	253, 265, 319, 569, 746
NlaIV	GGNNCC	3 cut(s)	86, 231, 510
NmeAIII	GCCGAG	1 cut(s)	175
NspI	RCATGY	3 cut(s)	253, 569, 746
OliI	CACNNNNGTG	1 cut(s)	591
PagI	TCATGA	1 cut(s)	261
PasI	CCCWGGG	1 cut(s)	140
PctI	GAATGC	3 cut(s)	157, 261, 677
PflMI	CCANNNNNTGG	1 cut(s)	81
PinAI	ACCGGT	1 cut(s)	662
PkrI	GCNGC	8 cut(s)	112, 157, 283, 292, 625, 634, 637, 689
Ple19I	CGATCG	1 cut(s)	915
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	3 cut(s)	86, 231, 510
PspPI	GGNCC	2 cut(s)	509, 764
PstI	CTGCAG	1 cut(s)	637
PsuI	RGATCY	1 cut(s)	184
PvuI	CGATCG	1 cut(s)	915
RsaI	GTAC	1 cut(s)	884
RsaNI	GTAC	1 cut(s)	883
RseI	CAYNNNNRTG	3 cut(s)	254, 520, 591
SaqAI	TTAA	2 cut(s)	617, 683
SatI	GCNGC	8 cut(s)	111, 156, 282, 291, 624, 633, 636, 688
Sau3AI	GATC	3 cut(s)	184, 729, 912
Sau96I	GGNCC	2 cut(s)	509, 764
ScrFI	CCNGG	2 cut(s)	141, 580
SduI	GDGCHC	1 cut(s)	586
SfaNI	GCATC	2 cut(s)	91, 560
SfcI	CTRYAG	2 cut(s)	201, 633
SinI	GGWCC	2 cut(s)	509, 764
SmiMI	CAYNNNNRTG	3 cut(s)	254, 520, 591
SmlI	CTYRAG	1 cut(s)	682
SmoI	CTYRAG	1 cut(s)	682
Sse9I	AATT	4 cut(s)	208, 298, 407, 618
SsiI	CCGC	4 cut(s)	227, 623, 851, 878
SspMI	CTAG	4 cut(s)	345, 356, 519, 858
StyD4I	CCNGG	2 cut(s)	139, 578
StyI	CCWWGG	4 cut(s)	88, 344, 694, 857
TaaI	ACNGT	2 cut(s)	205, 482
TaqI	TCGA	1 cut(s)	915
TaqII	GACCGA	1 cut(s)	921
TasI	AATT	4 cut(s)	208, 298, 407, 618
TauI	GCSGC	1 cut(s)	626
Tru1I	TTAA	2 cut(s)	617, 683
Tru9I	TTAA	2 cut(s)	617, 683
TscAI	CASTG	3 cut(s)	249, 633, 800
TseI	GCWGC	7 cut(s)	110, 155, 281, 290, 632, 635, 687
TspDTI	ATGAA	3 cut(s)	278, 413, 450
TspGWI	ACGGA	1 cut(s)	963
TspRI	CASTG	3 cut(s)	249, 633, 800
Van91I	CCANNNNNTGG	1 cut(s)	81
Vha464I	CTTAAG	1 cut(s)	682
VpaK11BI	GGWCC	2 cut(s)	509, 764
XapI	RAATTY	1 cut(s)	407
XceI	RCATGY	3 cut(s)	253, 569, 746
XcmI	CCANNNNNNNNNTGG	1 cut(s)	519
XmaJI	CCTAGG	2 cut(s)	344, 857
XspI	CTAG	4 cut(s)	345, 356, 519, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.