Prupe.3G310100_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
26949741 .. 26953006
3266 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G310100.1

Sequence Viewer

Length: 1656 bp
ATGAGGTATGGTGTTTGGAGAAGGAGACGGGTGTCTGTAGGGTCAATTCTGATAGTGTGTGCATTGTGTGCTGGAATGGGGCTGTTGATGCTCAACTTAAGACAGGTTGATCCTCCAACGAGCCCCGATTTCCCCATGCAAATTCACAATTCGGATTCGGAGTCTGAAAGCGGTGGTGAGGTTGGGGTTGAGGACGAGCCTGAGAGCAAGAGTAAGAGAAAATCCAACTCCTGTGCTACGGTGGAAGAGATGGGAAAGGACTTCAAAGGAGGGTTCTGGGAGGAAAGTCTCAGAGTCAGGAAACTTATTCAACATCACTTTGACTTGAATGGTGCTTCCCGGGTCCGAAATCTTCCTCCCGAACAGTTTTGTCAGCATGGCTTTGTGATGGGTAAAGCATCAGAGGCAGGTTTCGGGAATGAAATGTACAAAATTTTAAATGGTGCAGCATTGAGTATACTATTAAACCGGTCCCTGATCATTGGGCAAACCAGGGGAAAATTCCCTTTCGGGGATTACATTTCTTATTCCAACGTTTCCTTTACCATGAGAGAAATTAAGCATCTGTGGAGACTTAATAAATGTGTTAAGAAGTATGGAAGGCAACTGATTATGAGGACTGATGACTTTGAGAAGCCAACACAGACAAATGTCCTTTGTAGTGACTGGAGGAAATGGAAGCAACCTATCATATGGTTCCAAGGTACAAATGATGCTGTGGCAGCCCAATTTTTCTTGAAAAATATACACCCTGAGATGAGGAATGCTGCTTCTATTTTATTTGGAAAGCCAGAGGTTCTCCATTCTCGGCCTAATGTATTTGGGGAGCTGATGAGAGTGCTTATAACTCCTTCCGAGGATGTTGAGGATGCCGTCAATTGGGTTCTTAGTGGAGTGGAACCTGATATTTCACTGCACATGCGAATGCTCATGAATAAGTCTATCAGAGCTGCTCAGGCAGCATTGAACTGCATCAGAAAAGCTAAGCAAAATCTTGGCAAGTCACCAAGACCCAGGGTAGTCATAGTGTCAGATACTCCCTCTCTTGTGAAAAGTATTACACCAAATATAAGCAAATTTGCAGAGGTCATTCATTTTGATTATGAACTTTTCAAAGGAAATATATCTGATAGCAGAAAGGGATTGCACAGTTTAGATTTTAGAATGAAAGATTGGGGCCCAGCGCCCAGATGGGTTGCCTTTGTAGACTTCTTTCTCGCATCACATGCAAAATATGCTGTTGTGTCTGGGGCTCACAGGCGTGTTGGGACGACTTATGCACAGTTAATTGCAGCACTGGCTGCAGCAAACAATCTTGGCGACAAACCAACTGGTTCTAATTTTGCATTTTTAAGCAGCTTTCAAGGTGATTTGTTGAGAGAAGGTTTAAGATTTCAGATTGGTTGGGGGCATGTGTGGAACAGATTTGCAGGCCCCCTTGGGTGTCATAAACAGCCTAATCAATGTGCTTTCACACCGCTTCTCCCTCCGGCATGGTGGGATGGCCTTTGGCAATCCCCCCTTCCAAGGGATATCAAGAAGTTGGCGGAGTACGGCATCCAGTTATCGGGCTTTGGCACAATGGATGAAAATTATCTCGACACATTTTGTAGCTCAAGGAAGGTTGTGGTGAAAACTGTTCCATTCCTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

552

Amino Acids

62.1

Weight (kDa)

9.44

Isoelectric Point (pI)

37.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 845
Acc36I ACCTGC 1 cut(s) 398
AccI GTMKAC 2 cut(s) 457, 1206
AciI CCGC 3 cut(s) 171, 1478, 1547
AclI AACGTT 1 cut(s) 534
AclWI GGATC 1 cut(s) 104
AcsI RAATTY 4 cut(s) 141, 432, 500, 1076
AfaI GTAC 3 cut(s) 428, 706, 1553
AfiI CCNNNNNNNGG 5 cut(s) 511, 879, 1527, 1528, 1567
AflII CTTAAG 1 cut(s) 97
AgeI ACCGGT 1 cut(s) 468
AgsI TTSAA 7 cut(s) 265, 311, 328, 739, 967, 1114, 1364
AjnI CCWGG 2 cut(s) 491, 1013
AjuI GAANNNNNNNTTGG 2 cut(s) 1156, 1188
AleI CACNNNNGTG 1 cut(s) 1260
AluBI AGCT 5 cut(s) 829, 950, 983, 1359, 1614
AluI AGCT 5 cut(s) 829, 950, 983, 1359, 1614
Alw26I GTCTC 3 cut(s) 19, 293, 565
AlwI GGATC 1 cut(s) 104
Ama87I CYCGRG 1 cut(s) 339
AoxI GGCC 4 cut(s) 809, 1177, 1432, 1504
ApaI GGGCCC 1 cut(s) 1181
ApeKI GCWGC 9 cut(s) 446, 722, 767, 950, 959, 1292, 1301, 1304, 1356
ApoI RAATTY 4 cut(s) 141, 432, 500, 1076
AsiGI ACCGGT 1 cut(s) 468
AspLEI GCGC 1 cut(s) 1186
AspS9I GGNCC 5 cut(s) 343, 471, 1177, 1178, 1433
AsuC2I CCSGG 2 cut(s) 340, 341
AsuHPI GGTGA 4 cut(s) 188, 996, 1379, 1642
AvaI CYCGRG 1 cut(s) 339
AvaII GGWCC 2 cut(s) 343, 471
BaeGI GKGCMC 1 cut(s) 1181
BanII GRGCYC 3 cut(s) 125, 1181, 1255
BbvI GCAGC 9 cut(s) 458, 734, 754, 937, 971, 1288, 1304, 1316, 1368
BccI CCATC 4 cut(s) 244, 382, 1185, 1496
BceAI ACGGC 2 cut(s) 857, 1570
BciT130I CCWGG 2 cut(s) 493, 1015
BclI TGATCA 1 cut(s) 477
BcnI CCSGG 2 cut(s) 340, 341
BcoDI GTCTC 3 cut(s) 19, 293, 565
BfmI CTRYAG 2 cut(s) 36, 1302
BfoI RGCGCY 1 cut(s) 1187
BfrI CTTAAG 1 cut(s) 97
BfuAI ACCTGC 1 cut(s) 398
BisI GCNGC 9 cut(s) 447, 723, 768, 951, 960, 1293, 1302, 1305, 1357
BlpI GCTNAGC 1 cut(s) 984
BlsI GCNGC 9 cut(s) 448, 724, 769, 952, 961, 1294, 1303, 1306, 1358
Bme1390I CCNGG 4 cut(s) 340, 341, 493, 1015
Bme18I GGWCC 2 cut(s) 343, 471
BmeT110I CYCGRG 1 cut(s) 339
BmgT120I GGNCC 5 cut(s) 343, 471, 1177, 1178, 1433
BmiI GGNNCC 7 cut(s) 344, 473, 698, 900, 1178, 1179, 1435
BmrFI CCNGG 4 cut(s) 340, 341, 493, 1015
BmsI GCATC 8 cut(s) 78, 407, 571, 703, 859, 981, 1229, 1566
BoxI GACNNNNGTC 2 cut(s) 31, 650
BpmI CTGGAG 1 cut(s) 688
Bpu10I CCTNAGC 1 cut(s) 954
Bpu1102I GCTNAGC 1 cut(s) 984
BpuEI CTTGAG 1 cut(s) 1600
BpuMI CCSGG 2 cut(s) 340, 341
BsaJI CCNNGG 8 cut(s) 339, 492, 700, 855, 1013, 1014, 1438, 1526
BsaWI WCCGGW 1 cut(s) 468
BsaXI ACNNNNNCTCC 2 cut(s) 1467, 1497
Bsc4I CCNNNNNNNGG 5 cut(s) 511, 879, 1527, 1528, 1567
Bse118I RCCGGY 1 cut(s) 468
Bse1I ACTGG 4 cut(s) 671, 1302, 1336, 1561
BseBI CCWGG 2 cut(s) 493, 1015
BseDI CCNNGG 8 cut(s) 339, 492, 700, 855, 1013, 1014, 1438, 1526
BseGI GGATG 5 cut(s) 865, 874, 1507, 1557, 1591
BseLI CCNNNNNNNGG 5 cut(s) 511, 879, 1527, 1528, 1567
BseMII CTCAG 4 cut(s) 192, 304, 744, 968
BseNI ACTGG 4 cut(s) 671, 1302, 1336, 1561
BseSI GKGCMC 1 cut(s) 1181
BseXI GCAGC 9 cut(s) 458, 734, 754, 937, 971, 1288, 1304, 1316, 1368
BseYI CCCAGC 1 cut(s) 1180
BsgI GTGCAG 2 cut(s) 465, 899
BshFI GGCC 4 cut(s) 811, 1179, 1434, 1506
BshTI ACCGGT 1 cut(s) 468
BsiHKCI CYCGRG 1 cut(s) 339
BsiSI CCGG 3 cut(s) 340, 469, 1490
BslFI GGGAC 2 cut(s) 457, 1282
BslI CCNNNNNNNGG 5 cut(s) 511, 879, 1527, 1528, 1567
BsmAI GTCTC 3 cut(s) 19, 293, 565
BsmBI CGTCTC 1 cut(s) 19
BsmFI GGGAC 2 cut(s) 457, 1282
BsmI GAATGC 2 cut(s) 769, 930
BsnI GGCC 4 cut(s) 811, 1179, 1434, 1506
BsoBI CYCGRG 1 cut(s) 339
Bsp120I GGGCCC 1 cut(s) 1177
Bsp1286I GDGCHC 3 cut(s) 125, 1181, 1255
Bsp1407I TGTACA 1 cut(s) 426
Bsp143I GATC 2 cut(s) 109, 477
Bsp1720I GCTNAGC 1 cut(s) 984
BspACI CCGC 3 cut(s) 171, 1478, 1547
BspANI GGCC 4 cut(s) 811, 1179, 1434, 1506
BspCNI CTCAG 4 cut(s) 193, 303, 745, 967
BspHI TCATGA 1 cut(s) 930
BspLI GGNNCC 7 cut(s) 344, 473, 698, 900, 1178, 1179, 1435
BspMAI CTGCAG 1 cut(s) 1306
BspMI ACCTGC 1 cut(s) 398
BspPI GGATC 1 cut(s) 104
BspTI CTTAAG 1 cut(s) 97
BsrFI RCCGGY 1 cut(s) 468
BsrGI TGTACA 1 cut(s) 426
BsrI ACTGG 4 cut(s) 671, 1302, 1336, 1561
BssAI RCCGGY 1 cut(s) 468
BssECI CCNNGG 8 cut(s) 339, 492, 700, 855, 1013, 1014, 1438, 1526
BssMI GATC 2 cut(s) 109, 477
BssNAI GTATAC 1 cut(s) 458
BssT1I CCWWGG 3 cut(s) 700, 1438, 1526
Bst1107I GTATAC 1 cut(s) 458
Bst2UI CCWGG 2 cut(s) 493, 1015
Bst4CI ACNGT 5 cut(s) 241, 366, 1151, 1284, 1639
Bst6I CTCTTC 1 cut(s) 240
BstAFI CTTAAG 1 cut(s) 97
BstAPI GCANNNNNTGC 4 cut(s) 68, 1226, 1235, 1301
BstAUI TGTACA 1 cut(s) 426
BstC8I GCNNGC 1 cut(s) 1432
BstDEI CTNAG 6 cut(s) 201, 290, 753, 887, 954, 984
BstF5I GGATG 5 cut(s) 865, 874, 1507, 1557, 1591
BstH2I RGCGCY 1 cut(s) 1187
BstHHI GCGC 1 cut(s) 1186
BstKTI GATC 2 cut(s) 112, 480
BstMAI GTCTC 3 cut(s) 19, 293, 565
BstMBI GATC 2 cut(s) 109, 477
BstNI CCWGG 2 cut(s) 493, 1015
BstNSI RCATGY 3 cut(s) 922, 1229, 1415
BstPAI GACNNNNGTC 2 cut(s) 31, 650
BstSCI CCNGG 4 cut(s) 338, 339, 491, 1013
BstSFI CTRYAG 2 cut(s) 36, 1302
BstSLI GKGCMC 1 cut(s) 1181
BstV1I GCAGC 9 cut(s) 458, 734, 754, 937, 971, 1288, 1304, 1316, 1368
BstZ17I GTATAC 1 cut(s) 458
BsuRI GGCC 4 cut(s) 811, 1179, 1434, 1506
BtsCI GGATG 5 cut(s) 865, 874, 1507, 1557, 1591
BtsI GCAGTG 1 cut(s) 911
BtsIMutI CAGTG 2 cut(s) 911, 1295
BveI ACCTGC 1 cut(s) 398
Cac8I GCNNGC 1 cut(s) 1432
CciI TCATGA 1 cut(s) 930
CfoI GCGC 1 cut(s) 1186
Cfr10I RCCGGY 1 cut(s) 468
Cfr13I GGNCC 5 cut(s) 343, 471, 1177, 1178, 1433
Cfr9I CCCGGG 1 cut(s) 339
Csp6I GTAC 3 cut(s) 427, 705, 1552
CspAI ACCGGT 1 cut(s) 468
CviAII CATG 8 cut(s) 136, 377, 547, 919, 931, 1226, 1412, 1494
CviQI GTAC 3 cut(s) 427, 705, 1552
DdeI CTNAG 6 cut(s) 201, 290, 753, 887, 954, 984
DpnI GATC 2 cut(s) 111, 479
DpnII GATC 2 cut(s) 109, 477
DraI TTTAAA 1 cut(s) 438
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
EciI GGCGGA 1 cut(s) 1562
Eco130I CCWWGG 3 cut(s) 700, 1438, 1526
Eco24I GRGCYC 3 cut(s) 125, 1181, 1255
Eco32I GATATC 1 cut(s) 1534
Eco47I GGWCC 2 cut(s) 343, 471
Eco88I CYCGRG 1 cut(s) 339
EcoO109I RGGNCCY 2 cut(s) 1177, 1433
EcoRII CCWGG 2 cut(s) 491, 1013
EcoRV GATATC 1 cut(s) 1534
EcoT14I CCWWGG 3 cut(s) 700, 1438, 1526
EcoT38I GRGCYC 3 cut(s) 125, 1181, 1255
ErhI CCWWGG 3 cut(s) 700, 1438, 1526
Esp3I CGTCTC 1 cut(s) 19
FaeI CATG 8 cut(s) 139, 380, 550, 922, 934, 1229, 1415, 1497
FaqI GGGAC 2 cut(s) 457, 1282
FatI CATG 8 cut(s) 135, 376, 546, 918, 930, 1225, 1411, 1493
FauNDI CATATG 1 cut(s) 692
FbaI TGATCA 1 cut(s) 477
FblI GTMKAC 2 cut(s) 457, 1206
Fnu4HI GCNGC 9 cut(s) 447, 723, 768, 951, 960, 1293, 1302, 1305, 1357
FokI GGATG 5 cut(s) 872, 881, 1514, 1544, 1598
FriOI GRGCYC 3 cut(s) 125, 1181, 1255
Fsp4HI GCNGC 9 cut(s) 447, 723, 768, 951, 960, 1293, 1302, 1305, 1357
GlaI GCGC 1 cut(s) 1185
GluI GCNGC 9 cut(s) 447, 723, 768, 951, 960, 1293, 1302, 1305, 1357
GsaI CCCAGC 1 cut(s) 1184
GsuI CTGGAG 1 cut(s) 688
HaeII RGCGCY 1 cut(s) 1187
HaeIII GGCC 4 cut(s) 811, 1179, 1434, 1506
HapII CCGG 3 cut(s) 340, 469, 1490
HhaI GCGC 1 cut(s) 1186
Hin1II CATG 8 cut(s) 139, 380, 550, 922, 934, 1229, 1415, 1497
Hin6I GCGC 1 cut(s) 1184
HinP1I GCGC 1 cut(s) 1184
HinfI GANTC 3 cut(s) 155, 161, 294
HpaII CCGG 3 cut(s) 340, 469, 1490
HphI GGTGA 4 cut(s) 188, 996, 1379, 1642
Hpy166II GTNNAC 2 cut(s) 458, 1207
Hpy188III TCNNGA 7 cut(s) 298, 359, 415, 736, 931, 1537, 1598
Hpy8I GTNNAC 2 cut(s) 458, 1207
HpyAV CCTTC 6 cut(s) 15, 594, 861, 1376, 1532, 1615
HpyCH4III ACNGT 5 cut(s) 241, 366, 1151, 1284, 1639
HpyCH4IV ACGT 1 cut(s) 534
HpyF3I CTNAG 6 cut(s) 201, 290, 753, 887, 954, 984
HpySE526I ACGT 1 cut(s) 534
Hsp92II CATG 8 cut(s) 139, 380, 550, 922, 934, 1229, 1415, 1497
HspAI GCGC 1 cut(s) 1184
Ksp22I TGATCA 1 cut(s) 477
Kzo9I GATC 2 cut(s) 109, 477
LmnI GCTCC 1 cut(s) 826
Lsp1109I GCAGC 9 cut(s) 458, 734, 754, 937, 971, 1288, 1304, 1316, 1368
LweI GCATC 8 cut(s) 78, 407, 571, 703, 859, 981, 1229, 1566
MaeII ACGT 1 cut(s) 534
MaeIII GTNAC 2 cut(s) 662, 1002
MalI GATC 2 cut(s) 111, 479
MboI GATC 2 cut(s) 109, 477
MboII GAAGA 2 cut(s) 257, 344
MfeI CAATTG 1 cut(s) 877
MhlI GDGCHC 3 cut(s) 125, 1181, 1255
MlyI GAGTC 2 cut(s) 170, 303
MmeI TCCRAC 3 cut(s) 140, 249, 555
MseI TTAA 9 cut(s) 98, 437, 464, 558, 576, 588, 1286, 1352, 1388
MslI CAYNNNNRTG 2 cut(s) 923, 1260
MspCI CTTAAG 1 cut(s) 97
MspI CCGG 3 cut(s) 340, 469, 1490
MspR9I CCNGG 4 cut(s) 340, 341, 493, 1015
MunI CAATTG 1 cut(s) 877
Mva1269I GAATGC 2 cut(s) 769, 930
MvaI CCWGG 2 cut(s) 493, 1015
NciI CCSGG 2 cut(s) 340, 341
NdeI CATATG 1 cut(s) 692
NdeII GATC 2 cut(s) 109, 477
NlaIII CATG 8 cut(s) 139, 380, 550, 922, 934, 1229, 1415, 1497
NlaIV GGNNCC 7 cut(s) 344, 473, 698, 900, 1178, 1179, 1435
NmeAIII GCCGAG 1 cut(s) 787
NmuCI GTSAC 2 cut(s) 662, 1002
NspI RCATGY 3 cut(s) 922, 1229, 1415
OliI CACNNNNGTG 1 cut(s) 1260
PagI TCATGA 1 cut(s) 930
PasI CCCWGGG 1 cut(s) 1014
PctI GAATGC 2 cut(s) 769, 930
PfeI GAWTC 1 cut(s) 155
PinAI ACCGGT 1 cut(s) 468
PkrI GCNGC 9 cut(s) 448, 724, 769, 952, 961, 1294, 1303, 1306, 1358
PleI GAGTC 2 cut(s) 169, 302
PpsI GAGTC 2 cut(s) 169, 302
PshAI GACNNNNGTC 2 cut(s) 31, 650
PsiI TTATAA 1 cut(s) 845
Psp1406I AACGTT 1 cut(s) 534
Psp6I CCWGG 2 cut(s) 491, 1013
PspFI CCCAGC 1 cut(s) 1180
PspGI CCWGG 2 cut(s) 491, 1013
PspN4I GGNNCC 7 cut(s) 344, 473, 698, 900, 1178, 1179, 1435
PspOMI GGGCCC 1 cut(s) 1177
PspPI GGNCC 5 cut(s) 343, 471, 1177, 1178, 1433
PstI CTGCAG 1 cut(s) 1306
RsaI GTAC 3 cut(s) 428, 706, 1553
RsaNI GTAC 3 cut(s) 427, 705, 1552
RseI CAYNNNNRTG 2 cut(s) 923, 1260
SaqAI TTAA 9 cut(s) 98, 437, 464, 558, 576, 588, 1286, 1352, 1388
SatI GCNGC 9 cut(s) 447, 723, 768, 951, 960, 1293, 1302, 1305, 1357
Sau3AI GATC 2 cut(s) 109, 477
Sau96I GGNCC 5 cut(s) 343, 471, 1177, 1178, 1433
SchI GAGTC 2 cut(s) 170, 303
ScrFI CCNGG 4 cut(s) 340, 341, 493, 1015
SduI GDGCHC 3 cut(s) 125, 1181, 1255
SfaNI GCATC 8 cut(s) 78, 407, 571, 703, 859, 981, 1229, 1566
SfcI CTRYAG 2 cut(s) 36, 1302
SinI GGWCC 2 cut(s) 343, 471
SmaI CCCGGG 1 cut(s) 341
SmiMI CAYNNNNRTG 2 cut(s) 923, 1260
SmlI CTYRAG 2 cut(s) 97, 1615
SmoI CTYRAG 2 cut(s) 97, 1615
SsiI CCGC 3 cut(s) 171, 1478, 1547
StyD4I CCNGG 4 cut(s) 338, 339, 491, 1013
StyI CCWWGG 3 cut(s) 700, 1438, 1526
TaaI ACNGT 5 cut(s) 241, 366, 1151, 1284, 1639
TaiI ACGT 1 cut(s) 537
TaqI TCGA 1 cut(s) 1599
TatI WGTACW 1 cut(s) 426
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 9 cut(s) 98, 437, 464, 558, 576, 588, 1286, 1352, 1388
Tru9I TTAA 9 cut(s) 98, 437, 464, 558, 576, 588, 1286, 1352, 1388
TscAI CASTG 2 cut(s) 918, 1302
TseFI GTSAC 2 cut(s) 662, 1002
TseI GCWGC 9 cut(s) 446, 722, 767, 950, 959, 1292, 1301, 1304, 1356
Tsp45I GTSAC 2 cut(s) 662, 1002
TspDTI ATGAA 6 cut(s) 435, 947, 1082, 1119, 1181, 1602
TspMI CCCGGG 1 cut(s) 339
TspRI CASTG 2 cut(s) 918, 1302
Vha464I CTTAAG 1 cut(s) 97
VpaK11BI GGWCC 2 cut(s) 343, 471
XapI RAATTY 4 cut(s) 141, 432, 500, 1076
XceI RCATGY 3 cut(s) 922, 1229, 1415
XcmI CCANNNNNNNNNTGG 1 cut(s) 1188
XmaI CCCGGG 1 cut(s) 339
XmiI GTMKAC 2 cut(s) 457, 1206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.