Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041131.1

Orthogroup ID

OG0005445

Physical Location & Seq

Genomic Coordinates Forward (+)

1674 .. 2616

Gene Structure 943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041131.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgattaggaggcatgccgtatggagaaggagacgagtttctgtagggtcaattctgatattcggtgcaatttttgccggaatcggattgctgattctcaacttaagacctgtccatgatgattctccaacgacaacgagccgcgatttgcctgttgaaattcacgactcggtttcgatttcggagtcggagtcggactctggtgctggtgctggagttggggttgagtcggagactcggagcagcgagagcgagagtaagagtaagagaaaatcgagctcgtgtgcttcggtgcaagagatgggaaaggagtttgaaggagggttttgggatgaaagtttcagagtgaggaaacttattcaaaagcactttgaattgaatggtgcttcgagggtgcggaatcttcctccacaacagttttgccagcatggttttgtgcttggtaaatcagcagaggcaggcttcgggaatgaaatgtacaagatcttaagtggtgcagcactgagtgtgatgttaaaccgaagccgttattgtggcttaccgctgaagcatattaacgtactctatggcttagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.11

Weight (kDa)

9.3

Isoelectric Point (pI)

64.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26950
fragaria_vesca	FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950
malus_domestica	MD09G1007000.v1.1 MD17G1010700.v1.1
prunus_persica	Prupe.3G297400_v2.0.a1 Prupe.3G310100_v2.0.a1 Prupe.3G310100_v2.0.a1
pyrus_communis	pycom111g00520 pycom17g00550
rosa_chinensis	RchiOBHm_Chr2g0176111
rosa_laevigata	RLG00000022382
rosa_multiflora	Rmu_co8462439.1_g000001 Rmu_sc0041131.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076760
rosa_rugosa	Rorug02G0590500 Rorug02G0590600
rosa_samantha	Rh2AG669400 Rh2BG681000 Rh2CG643900 Rh2DG694700
rosa_wichuraiana	Rw2G054910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	144
AciI	CCGC	3 cut(s)	142, 397, 542
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	566
AdeI	CACNNNGTG	1 cut(s)	506
AfaI	GTAC	2 cut(s)	479, 561
AflII	CTTAAG	2 cut(s)	103, 487
AgsI	TTSAA	5 cut(s)	158, 317, 362, 374, 379
AluBI	AGCT	1 cut(s)	279
AluI	AGCT	1 cut(s)	279
Alw21I	GWGCWC	1 cut(s)	281
Alw26I	GTCTC	2 cut(s)	25, 227
ApeKI	GCWGC	2 cut(s)	243, 497
ApoI	RAATTY	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	281
BauI	CACGAG	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	281
BbvI	GCAGC	2 cut(s)	255, 509
BccI	CCATC	1 cut(s)	295
BceAI	ACGGC	2 cut(s)	2, 510
BcoDI	GTCTC	2 cut(s)	25, 227
BfmI	CTRYAG	1 cut(s)	42
BfrI	CTTAAG	2 cut(s)	103, 487
BglII	AGATCT	1 cut(s)	483
BisI	GCNGC	3 cut(s)	142, 244, 498
BlsI	GCNGC	3 cut(s)	143, 245, 499
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
BpmI	CTGGAG	1 cut(s)	234
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 206, 207, 237
BseGI	GGATG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	494
BseXI	GCAGC	2 cut(s)	255, 509
BsgI	GTGCAG	1 cut(s)	516
Bsh1236I	CGCG	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	78
BsmAI	GTCTC	2 cut(s)	25, 227
BsmBI	CGTCTC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	1 cut(s)	483
BspACI	CCGC	3 cut(s)	142, 397, 542
BspCNI	CTCAG	1 cut(s)	495
BspFNI	CGCG	1 cut(s)	144
BspTI	CTTAAG	2 cut(s)	103, 487
BsrGI	TGTACA	1 cut(s)	477
BssMI	GATC	1 cut(s)	483
BssSI	CACGAG	1 cut(s)	280
Bst2BI	CACGAG	1 cut(s)	280
Bst4CI	ACNGT	1 cut(s)	417
BstAFI	CTTAAG	2 cut(s)	103, 487
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstAUI	TGTACA	1 cut(s)	477
BstC8I	GCNNGC	3 cut(s)	15, 425, 460
BstDEI	CTNAG	2 cut(s)	503, 571
BstF5I	GGATG	1 cut(s)	337
BstFNI	CGCG	1 cut(s)	144
BstKTI	GATC	1 cut(s)	486
BstMAI	GTCTC	2 cut(s)	25, 227
BstMBI	GATC	1 cut(s)	483
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 249
BstNSI	RCATGY	1 cut(s)	17
BstSFI	CTRYAG	1 cut(s)	42
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	255, 509
BstX2I	RGATCY	1 cut(s)	483
BstYI	RGATCY	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	500
Cac8I	GCNNGC	3 cut(s)	15, 425, 460
Csp6I	GTAC	2 cut(s)	478, 560
CviAII	CATG	3 cut(s)	14, 116, 428
CviJI	RGCY	6 cut(s)	141, 279, 462, 525, 537, 570
CviKI_1	RGCY	6 cut(s)	141, 279, 462, 525, 537, 570
CviQI	GTAC	2 cut(s)	478, 560
DdeI	CTNAG	2 cut(s)	503, 571
DpnI	GATC	1 cut(s)	485
DpnII	GATC	1 cut(s)	483
DraIII	CACNNNGTG	1 cut(s)	506
Ecl136II	GAGCTC	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	281
Eco53kI	GAGCTC	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	566
EcoICRI	GAGCTC	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	281
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	3 cut(s)	17, 119, 431
FaiI	YATR	6 cut(s)	15, 22, 117, 429, 552, 567
FatI	CATG	3 cut(s)	13, 115, 427
Fnu4HI	GCNGC	3 cut(s)	142, 244, 498
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	281
Fsp4HI	GCNGC	3 cut(s)	142, 244, 498
GluI	GCNGC	3 cut(s)	142, 244, 498
GsuI	CTGGAG	1 cut(s)	234
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	3 cut(s)	17, 119, 431
HpaII	CCGG	1 cut(s)	78
Hpy188I	TCNGA	8 cut(s)	57, 86, 184, 190, 196, 232, 240, 344
Hpy188III	TCNNGA	2 cut(s)	164, 466
HpyAV	CCTTC	2 cut(s)	21, 311
HpyCH4III	ACNGT	1 cut(s)	417
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	3 cut(s)	68, 295, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 249
HpyF3I	CTNAG	2 cut(s)	503, 571
HpySE526I	ACGT	1 cut(s)	558
Hsp92II	CATG	3 cut(s)	17, 119, 431
Kzo9I	GATC	1 cut(s)	483
LmnI	GCTCC	1 cut(s)	240
LpnPI	CCDG	8 cut(s)	91, 123, 165, 186, 192, 198, 437, 444
Lsp1109I	GCAGC	2 cut(s)	255, 509
MaeII	ACGT	1 cut(s)	558
MalI	GATC	1 cut(s)	485
MboI	GATC	1 cut(s)	483
MboII	GAAGA	1 cut(s)	395
MflI	RGATCY	1 cut(s)	483
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	4 cut(s)	51, 69, 159, 374
MlyI	GAGTC	6 cut(s)	161, 191, 194, 200, 229, 236
MmeI	TCCRAC	4 cut(s)	152, 168, 174, 210
MnlI	CCTC	6 cut(s)	3, 314, 342, 384, 417, 448
MseI	TTAA	4 cut(s)	104, 488, 515, 555
MspA1I	CMGCKG	1 cut(s)	544
MspCI	CTTAAG	2 cut(s)	103, 487
MspI	CCGG	1 cut(s)	78
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	74, 249
NdeII	GATC	1 cut(s)	483
NlaIII	CATG	3 cut(s)	17, 119, 431
NspI	RCATGY	1 cut(s)	17
PaeI	GCATGC	1 cut(s)	17
PfeI	GAWTC	4 cut(s)	81, 94, 122, 400
PkrI	GCNGC	3 cut(s)	143, 245, 499
PleI	GAGTC	6 cut(s)	161, 191, 193, 199, 229, 235
PpsI	GAGTC	6 cut(s)	161, 191, 193, 199, 229, 235
Psp124BI	GAGCTC	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	483
RsaI	GTAC	2 cut(s)	479, 561
RsaNI	GTAC	2 cut(s)	478, 560
SacI	GAGCTC	1 cut(s)	281
SaqAI	TTAA	4 cut(s)	104, 488, 515, 555
SatI	GCNGC	3 cut(s)	142, 244, 498
Sau3AI	GATC	1 cut(s)	483
SchI	GAGTC	6 cut(s)	161, 191, 194, 200, 229, 236
SduI	GDGCHC	1 cut(s)	281
SetI	ASST	3 cut(s)	112, 281, 561
SfcI	CTRYAG	1 cut(s)	42
SmlI	CTYRAG	2 cut(s)	103, 487
SmoI	CTYRAG	2 cut(s)	103, 487
SphI	GCATGC	1 cut(s)	17
Sse9I	AATT	4 cut(s)	51, 69, 159, 374
SsiI	CCGC	3 cut(s)	142, 397, 542
SstI	GAGCTC	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	417
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	3 cut(s)	176, 275, 389
TasI	AATT	4 cut(s)	51, 69, 159, 374
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	4 cut(s)	81, 94, 122, 400
Tru1I	TTAA	4 cut(s)	104, 488, 515, 555
Tru9I	TTAA	4 cut(s)	104, 488, 515, 555
TscAI	CASTG	1 cut(s)	507
TseI	GCWGC	2 cut(s)	243, 497
TspDTI	ATGAA	2 cut(s)	348, 486
TspRI	CASTG	1 cut(s)	507
Vha464I	CTTAAG	2 cut(s)	103, 487
XapI	RAATTY	1 cut(s)	159
XceI	RCATGY	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.