Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005445

Physical Location & Seq

Genomic Coordinates Forward (+)

26387103 .. 26389822

Gene Structure 2720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G297400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGGGCTGTTGATGCTCAACTTAAGACAAGTTGATCCTCCAACGAGCCCCGATTTCCCTATGCAAATTCACAATTGGGATTCAGAGTCTGAAAGCGGTGGTGGTAGGCTTGGGGTTAAGGACGAGGCAGAGAACAAGATTAAGAGAAAATCCAACTCCTGTGCTATGGTGGAAGAGATGGGAAAGGACTTCAAAGGAGGGTTCTGGGAGGAAAGTCTCAGAGTCAGGAAACTTATTCAGCATCACTTTGACTTGAATGGTGCTTCCCATGTCCGAAATCTTCTTCCAGAACAGTTTTGTCAGCATGGCTTTGTGATGGGTAAAGCATCAGAGGCAGGTTTCGGGAATGAAATGTACAAAAATTTTAGTGGTGCAGCATTAAGTATACTTTTAAACTGGTCCCTGATCATTGGGCAAAGCAGGCAAGCCTTTCTTTTCTTGTATTTCATAAATTCTTTTTCCCTGCGTATGCACCCTGAGATGAGGAATGCTGCTTCTATTTTATTTGGAAAGCCAGAGGTTCTCCATTCTCGGCCTAATGTATTTGGGGAGATAATGAGAGTGCTTATAACTCCTTCCGAGGATGTTGAGGATGCCTTCAATTGGGTTCTTAGTGGAGTGGAACCTGATATTTCACTGCACTTGCGAATGCTCATGAATAAAGCTGCACAGGCAGCATTGAACTGCATCATAAAAGCTAAGCAAAATCTTGGCAAGTCACCAAGACCCAGGGTAGTCATAGTGTCAGATACTCCCTCTCTCATGAAAAGTATTACACCAAATGTAATTAAACTTGCAGAGGTCATTCATTTTGATTATGAACTTTTCAAAGGAAATATATCTGATAGCAGAAAGGGATTGCACAGTTTAGATTTTAGAATGAAAGATTGGGGCCCAGCGCCCAGATGGATTGCCTTTGTAGACTTCTTTCTTGCATCACGTGCAAAATATGCTGTTGCGTCCGGGGCTCACAGGCATGTTGGGACGACTTATGCACAGTTAATTGCAGCACTGGCTGCAGCAAACAATCTTGGGACATACATGCATACGTGTTGTAATGTTCATTCTATTCCATCTTTCGCAGGTGACAAACCAACTGGTTCTAATTTTGCATTTTTAAGCAGCTTTCAAGGTGATTTGTTGAGAGAAGGTTTAAGATTTCAGATTGGTTGGGGGCATGTGTGGAACAGATTTGCAGGTCCCCTTGGGTGTCATAACCAGCCTAATCAATGTGCTTTCACACATCTTCTCCCTCCGGCATGGGATATCAAGAAGTTGGCGGAGTACGGGATCCAGTTAGCAGGGTTTGGCACAATTGATGAAAATTATCTTGACACTTTTTGTTGCTCAAGGAAGGTTGTGGTGAAAACTGTTCCATTCCTTCTGTTTCAGCCTATGTTTTGGCACGCCCCCCACTTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

475

Amino Acids

53.16

Weight (kDa)

8.75

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26950
fragaria_vesca	FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950
malus_domestica	MD09G1007000.v1.1 MD17G1010700.v1.1
prunus_persica	Prupe.3G297400_v2.0.a1 Prupe.3G310100_v2.0.a1 Prupe.3G310100_v2.0.a1
pyrus_communis	pycom111g00520 pycom17g00550
rosa_chinensis	RchiOBHm_Chr2g0176111
rosa_laevigata	RLG00000022382
rosa_multiflora	Rmu_co8462439.1_g000001 Rmu_sc0041131.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076760
rosa_rugosa	Rorug02G0590500 Rorug02G0590600
rosa_samantha	Rh2AG669400 Rh2BG681000 Rh2CG643900 Rh2DG694700
rosa_wichuraiana	Rw2G054910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	569
AarI	CACCTGC	1 cut(s)	1073
Acc36I	ACCTGC	3 cut(s)	326, 1073, 1187
AccI	GTMKAC	2 cut(s)	385, 921
AciI	CCGC	2 cut(s)	96, 1280
AclWI	GGATC	3 cut(s)	29, 1285, 1298
AcsI	RAATTY	3 cut(s)	66, 361, 451
AcvI	CACGTG	1 cut(s)	941
AfaI	GTAC	2 cut(s)	356, 1286
AfiI	CCNNNNNNNGG	1 cut(s)	603
AflII	CTTAAG	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	1049
AgsI	TTSAA	6 cut(s)	193, 256, 601, 682, 829, 1130
AjnI	CCWGG	1 cut(s)	728
AjuI	GAANNNNNNNTTGG	2 cut(s)	871, 903
AluBI	AGCT	3 cut(s)	665, 698, 1125
AluI	AGCT	3 cut(s)	665, 698, 1125
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	3 cut(s)	29, 1285, 1298
AlwNI	CAGNNNCTG	1 cut(s)	89
AoxI	GGCC	2 cut(s)	533, 892
ApaI	GGGCCC	1 cut(s)	896
ApeKI	GCWGC	8 cut(s)	374, 491, 665, 674, 1007, 1016, 1019, 1122
ApoI	RAATTY	3 cut(s)	66, 361, 451
AspLEI	GCGC	1 cut(s)	901
AspS9I	GGNCC	4 cut(s)	399, 892, 893, 1199
AsuC2I	CCSGG	1 cut(s)	964
AsuHPI	GGTGA	4 cut(s)	711, 1097, 1145, 1375
AvaII	GGWCC	2 cut(s)	399, 1199
BaeGI	GKGCMC	1 cut(s)	896
BamHI	GGATCC	1 cut(s)	1290
BanII	GRGCYC	3 cut(s)	50, 896, 970
BbrPI	CACGTG	1 cut(s)	941
BbvI	GCAGC	8 cut(s)	386, 478, 652, 686, 1003, 1019, 1031, 1134
BccI	CCATC	4 cut(s)	172, 310, 900, 1081
BciT130I	CCWGG	1 cut(s)	730
BclI	TGATCA	1 cut(s)	405
BcnI	CCSGG	1 cut(s)	964
BcoDI	GTCTC	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	1017
BfoI	RGCGCY	1 cut(s)	902
BfrI	CTTAAG	1 cut(s)	22
BfuAI	ACCTGC	3 cut(s)	326, 1073, 1187
BisI	GCNGC	8 cut(s)	375, 492, 666, 675, 1008, 1017, 1020, 1123
BlpI	GCTNAGC	1 cut(s)	699
BlsI	GCNGC	8 cut(s)	376, 493, 667, 676, 1009, 1018, 1021, 1124
Bme1390I	CCNGG	2 cut(s)	730, 964
Bme18I	GGWCC	2 cut(s)	399, 1199
BmgT120I	GGNCC	4 cut(s)	399, 892, 893, 1199
BmiI	GGNNCC	6 cut(s)	401, 624, 893, 894, 1201, 1292
BmrFI	CCNGG	2 cut(s)	730, 964
BmsI	GCATC	6 cut(s)	3, 250, 335, 583, 696, 944
Bpu1102I	GCTNAGC	1 cut(s)	699
BpuEI	CTTGAG	1 cut(s)	1333
BpuMI	CCSGG	1 cut(s)	964
BsaAI	YACGTR	2 cut(s)	941, 1050
BsaJI	CCNNGG	5 cut(s)	579, 728, 729, 963, 1204
BsaXI	ACNNNNNCTCC	2 cut(s)	1233, 1263
Bsc4I	CCNNNNNNNGG	1 cut(s)	603
Bse1I	ACTGG	4 cut(s)	401, 1017, 1102, 1294
BseBI	CCWGG	1 cut(s)	730
BseDI	CCNNGG	5 cut(s)	579, 728, 729, 963, 1204
BseGI	GGATG	2 cut(s)	589, 598
BseLI	CCNNNNNNNGG	1 cut(s)	603
BseMII	CTCAG	2 cut(s)	232, 468
BseNI	ACTGG	4 cut(s)	401, 1017, 1102, 1294
BseSI	GKGCMC	1 cut(s)	896
BseXI	GCAGC	8 cut(s)	386, 478, 652, 686, 1003, 1019, 1031, 1134
BseYI	CCCAGC	1 cut(s)	895
BsgI	GTGCAG	3 cut(s)	393, 623, 651
BshFI	GGCC	2 cut(s)	535, 894
BsiSI	CCGG	2 cut(s)	963, 1256
BslFI	GGGAC	4 cut(s)	385, 997, 1048, 1185
BslI	CCNNNNNNNGG	1 cut(s)	603
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	4 cut(s)	385, 997, 1048, 1185
BsmI	GAATGC	2 cut(s)	493, 654
BsnI	GGCC	2 cut(s)	535, 894
Bsp120I	GGGCCC	1 cut(s)	892
Bsp1286I	GDGCHC	3 cut(s)	50, 896, 970
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	3 cut(s)	34, 405, 1290
Bsp1720I	GCTNAGC	1 cut(s)	699
BspACI	CCGC	2 cut(s)	96, 1280
BspANI	GGCC	2 cut(s)	535, 894
BspCNI	CTCAG	2 cut(s)	231, 469
BspHI	TCATGA	2 cut(s)	654, 762
BspLI	GGNNCC	6 cut(s)	401, 624, 893, 894, 1201, 1292
BspMAI	CTGCAG	1 cut(s)	1021
BspMI	ACCTGC	3 cut(s)	326, 1073, 1187
BspPI	GGATC	3 cut(s)	29, 1285, 1298
BspTI	CTTAAG	1 cut(s)	22
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	4 cut(s)	401, 1017, 1102, 1294
BssECI	CCNNGG	5 cut(s)	579, 728, 729, 963, 1204
BssMI	GATC	3 cut(s)	34, 405, 1290
BssNAI	GTATAC	1 cut(s)	386
BssT1I	CCWWGG	1 cut(s)	1204
Bst1107I	GTATAC	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	730
Bst4CI	ACNGT	4 cut(s)	294, 866, 999, 1372
Bst6I	CTCTTC	1 cut(s)	168
BstAFI	CTTAAG	1 cut(s)	22
BstAPI	GCANNNNNTGC	3 cut(s)	941, 950, 1016
BstAUI	TGTACA	1 cut(s)	354
BstBAI	YACGTR	2 cut(s)	941, 1050
BstC8I	GCNNGC	3 cut(s)	422, 426, 1407
BstDEI	CTNAG	4 cut(s)	218, 477, 611, 699
BstF5I	GGATG	2 cut(s)	589, 598
BstH2I	RGCGCY	1 cut(s)	902
BstHHI	GCGC	1 cut(s)	901
BstKTI	GATC	3 cut(s)	37, 408, 1293
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	3 cut(s)	34, 405, 1290
BstNI	CCWGG	1 cut(s)	730
BstNSI	RCATGY	3 cut(s)	980, 1045, 1181
BstSCI	CCNGG	2 cut(s)	728, 962
BstSFI	CTRYAG	1 cut(s)	1017
BstSLI	GKGCMC	1 cut(s)	896
BstV1I	GCAGC	8 cut(s)	386, 478, 652, 686, 1003, 1019, 1031, 1134
BstX2I	RGATCY	1 cut(s)	1290
BstYI	RGATCY	1 cut(s)	1290
BstZ17I	GTATAC	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	535, 894
BtsCI	GGATG	2 cut(s)	589, 598
BtsI	GCAGTG	1 cut(s)	635
BtsIMutI	CAGTG	2 cut(s)	635, 1010
BveI	ACCTGC	3 cut(s)	326, 1073, 1187
Cac8I	GCNNGC	3 cut(s)	422, 426, 1407
CaiI	CAGNNNCTG	1 cut(s)	89
CciI	TCATGA	2 cut(s)	654, 762
CfoI	GCGC	1 cut(s)	901
Cfr13I	GGNCC	4 cut(s)	399, 892, 893, 1199
CseI	GACGC	1 cut(s)	948
Csp6I	GTAC	2 cut(s)	355, 1285
CviAII	CATG	8 cut(s)	269, 305, 655, 763, 977, 1042, 1178, 1260
CviQI	GTAC	2 cut(s)	355, 1285
DdeI	CTNAG	4 cut(s)	218, 477, 611, 699
DpnI	GATC	3 cut(s)	36, 407, 1292
DpnII	GATC	3 cut(s)	34, 405, 1290
DraI	TTTAAA	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
EciI	GGCGGA	1 cut(s)	1295
Eco130I	CCWWGG	1 cut(s)	1204
Eco24I	GRGCYC	3 cut(s)	50, 896, 970
Eco32I	GATATC	1 cut(s)	1267
Eco47I	GGWCC	2 cut(s)	399, 1199
Eco72I	CACGTG	1 cut(s)	941
EcoO109I	RGGNCCY	2 cut(s)	892, 1199
EcoRII	CCWGG	1 cut(s)	728
EcoRV	GATATC	1 cut(s)	1267
EcoT14I	CCWWGG	1 cut(s)	1204
EcoT22I	ATGCAT	1 cut(s)	1047
EcoT38I	GRGCYC	3 cut(s)	50, 896, 970
ErhI	CCWWGG	1 cut(s)	1204
FaeI	CATG	8 cut(s)	272, 308, 658, 766, 980, 1045, 1181, 1263
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FaqI	GGGAC	4 cut(s)	385, 997, 1048, 1185
FatI	CATG	8 cut(s)	268, 304, 654, 762, 976, 1041, 1177, 1259
FbaI	TGATCA	1 cut(s)	405
FblI	GTMKAC	2 cut(s)	385, 921
Fnu4HI	GCNGC	8 cut(s)	375, 492, 666, 675, 1008, 1017, 1020, 1123
FokI	GGATG	2 cut(s)	596, 605
FriOI	GRGCYC	3 cut(s)	50, 896, 970
Fsp4HI	GCNGC	8 cut(s)	375, 492, 666, 675, 1008, 1017, 1020, 1123
GlaI	GCGC	1 cut(s)	900
GluI	GCNGC	8 cut(s)	375, 492, 666, 675, 1008, 1017, 1020, 1123
GsaI	CCCAGC	1 cut(s)	899
HaeII	RGCGCY	1 cut(s)	902
HaeIII	GGCC	2 cut(s)	535, 894
HapII	CCGG	2 cut(s)	963, 1256
HgaI	GACGC	1 cut(s)	948
HhaI	GCGC	1 cut(s)	901
Hin1II	CATG	8 cut(s)	272, 308, 658, 766, 980, 1045, 1181, 1263
Hin6I	GCGC	1 cut(s)	899
HinP1I	GCGC	1 cut(s)	899
HinfI	GANTC	3 cut(s)	80, 86, 222
HpaII	CCGG	2 cut(s)	963, 1256
HphI	GGTGA	4 cut(s)	711, 1097, 1145, 1375
Hpy166II	GTNNAC	2 cut(s)	386, 922
Hpy188I	TCNGA	9 cut(s)	85, 91, 221, 275, 331, 580, 748, 844, 1164
Hpy188III	TCNNGA	7 cut(s)	226, 287, 343, 655, 763, 1270, 1331
Hpy8I	GTNNAC	2 cut(s)	386, 922
HpyAV	CCTTC	5 cut(s)	585, 607, 1142, 1348, 1391
HpyCH4III	ACNGT	4 cut(s)	294, 866, 999, 1372
HpyCH4IV	ACGT	2 cut(s)	940, 1049
HpyF3I	CTNAG	4 cut(s)	218, 477, 611, 699
HpySE526I	ACGT	2 cut(s)	940, 1049
Hsp92II	CATG	8 cut(s)	272, 308, 658, 766, 980, 1045, 1181, 1263
HspAI	GCGC	1 cut(s)	899
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	3 cut(s)	34, 405, 1290
Lsp1109I	GCAGC	8 cut(s)	386, 478, 652, 686, 1003, 1019, 1031, 1134
LweI	GCATC	6 cut(s)	3, 250, 335, 583, 696, 944
MaeII	ACGT	2 cut(s)	940, 1049
MaeIII	GTNAC	2 cut(s)	717, 1085
MalI	GATC	3 cut(s)	36, 407, 1292
MboI	GATC	3 cut(s)	34, 405, 1290
MboII	GAAGA	4 cut(s)	185, 272, 275, 1238
MfeI	CAATTG	3 cut(s)	73, 601, 1314
MflI	RGATCY	1 cut(s)	1290
MhlI	GDGCHC	3 cut(s)	50, 896, 970
MlyI	GAGTC	2 cut(s)	95, 231
MmeI	TCCRAC	2 cut(s)	65, 177
Mph1103I	ATGCAT	1 cut(s)	1047
MseI	TTAA	9 cut(s)	23, 117, 141, 380, 392, 789, 1001, 1118, 1154
MslI	CAYNNNNRTG	1 cut(s)	975
MspCI	CTTAAG	1 cut(s)	22
MspI	CCGG	2 cut(s)	963, 1256
MspR9I	CCNGG	2 cut(s)	730, 964
MunI	CAATTG	3 cut(s)	73, 601, 1314
Mva1269I	GAATGC	2 cut(s)	493, 654
MvaI	CCWGG	1 cut(s)	730
NciI	CCSGG	1 cut(s)	964
NdeII	GATC	3 cut(s)	34, 405, 1290
NlaIII	CATG	8 cut(s)	272, 308, 658, 766, 980, 1045, 1181, 1263
NlaIV	GGNNCC	6 cut(s)	401, 624, 893, 894, 1201, 1292
NmeAIII	GCCGAG	1 cut(s)	511
NmuCI	GTSAC	2 cut(s)	717, 1085
NsiI	ATGCAT	1 cut(s)	1047
NspI	RCATGY	3 cut(s)	980, 1045, 1181
PagI	TCATGA	2 cut(s)	654, 762
PaqCI	CACCTGC	1 cut(s)	1073
PasI	CCCWGGG	1 cut(s)	729
PctI	GAATGC	2 cut(s)	493, 654
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	8 cut(s)	376, 493, 667, 676, 1009, 1018, 1021, 1124
PleI	GAGTC	2 cut(s)	94, 230
PmaCI	CACGTG	1 cut(s)	941
PmlI	CACGTG	1 cut(s)	941
PpsI	GAGTC	2 cut(s)	94, 230
Ppu21I	YACGTR	2 cut(s)	941, 1050
PpuMI	RGGWCCY	1 cut(s)	1199
PsiI	TTATAA	1 cut(s)	569
Psp5II	RGGWCCY	1 cut(s)	1199
Psp6I	CCWGG	1 cut(s)	728
PspCI	CACGTG	1 cut(s)	941
PspFI	CCCAGC	1 cut(s)	895
PspGI	CCWGG	1 cut(s)	728
PspN4I	GGNNCC	6 cut(s)	401, 624, 893, 894, 1201, 1292
PspOMI	GGGCCC	1 cut(s)	892
PspPI	GGNCC	4 cut(s)	399, 892, 893, 1199
PspPPI	RGGWCCY	1 cut(s)	1199
PstI	CTGCAG	1 cut(s)	1021
PstNI	CAGNNNCTG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	1290
RsaI	GTAC	2 cut(s)	356, 1286
RsaNI	GTAC	2 cut(s)	355, 1285
RseI	CAYNNNNRTG	1 cut(s)	975
SaqAI	TTAA	9 cut(s)	23, 117, 141, 380, 392, 789, 1001, 1118, 1154
SatI	GCNGC	8 cut(s)	375, 492, 666, 675, 1008, 1017, 1020, 1123
Sau3AI	GATC	3 cut(s)	34, 405, 1290
Sau96I	GGNCC	4 cut(s)	399, 892, 893, 1199
SchI	GAGTC	2 cut(s)	95, 231
ScrFI	CCNGG	2 cut(s)	730, 964
SduI	GDGCHC	3 cut(s)	50, 896, 970
SfaNI	GCATC	6 cut(s)	3, 250, 335, 583, 696, 944
SfcI	CTRYAG	1 cut(s)	1017
SinI	GGWCC	2 cut(s)	399, 1199
SmiMI	CAYNNNNRTG	1 cut(s)	975
SmlI	CTYRAG	2 cut(s)	22, 1348
SmoI	CTYRAG	2 cut(s)	22, 1348
SsiI	CCGC	2 cut(s)	96, 1280
StyD4I	CCNGG	2 cut(s)	728, 962
StyI	CCWWGG	1 cut(s)	1204
TaaI	ACNGT	4 cut(s)	294, 866, 999, 1372
TaiI	ACGT	2 cut(s)	943, 1052
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	9 cut(s)	23, 117, 141, 380, 392, 789, 1001, 1118, 1154
Tru9I	TTAA	9 cut(s)	23, 117, 141, 380, 392, 789, 1001, 1118, 1154
TscAI	CASTG	2 cut(s)	642, 1017
TseFI	GTSAC	2 cut(s)	717, 1085
TseI	GCWGC	8 cut(s)	374, 491, 665, 674, 1007, 1016, 1019, 1122
Tsp45I	GTSAC	2 cut(s)	717, 1085
TspDTI	ATGAA	9 cut(s)	363, 436, 671, 779, 797, 834, 896, 1052, 1335
TspRI	CASTG	2 cut(s)	642, 1017
Vha464I	CTTAAG	1 cut(s)	22
VpaK11BI	GGWCC	2 cut(s)	399, 1199
XapI	RAATTY	3 cut(s)	66, 361, 451
XceI	RCATGY	3 cut(s)	980, 1045, 1181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	903
XmiI	GTMKAC	2 cut(s)	385, 921
Zsp2I	ATGCAT	1 cut(s)	1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.