Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8462439.1

Orthogroup ID

OG0005445

Physical Location & Seq

Genomic Coordinates Forward (+)

129 .. 1630

Gene Structure 1502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8462439.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atgaggactgatgactttgagaaaccaatgaagacaaatgtcatgtgtagcaactggaggagatggaagcaacctattatatggttccaaggtacaaatgacgctgtggcagcccagtttttcttgaagaatatacatccagagatgaggaaggctgcttctaatttatttggaaagccagaggctctccattctcggcctaatgtatttggagagctgatgagagtgcttatatctccttctgaagatgttgagcaagcaatcaattgggttatcggtggagtggatcctgatatttctctgcacatgcgaatgctcatgaataggtcggtgagagctgcacaggcagcactaaactgcatcagaaaagctgtgcgcaatcttggtaaagcctcaaggcccagggtggtcttagtgtcagataccccctctcttataaaaagtattacaccgaatataagcaagtttgctgaggtaattcattttgattacgaacttttcaaaggaaatatatctgacggcggtaaaagattgcgaagtttagaatttagagcaaaagattggggcccagcacccagatgggtcgcctttgtggacttctttcttgcatcacgggcaaaacatgctgttgtgtctggtgctcacaggcgtgttgggactacatatgctcagttaattgcagcactggctgcagcaaacaatctaggggacagtccaactggttcgaatttttcgttcttaagcagctttcaaagtgatttgttgagagaaggtttaagatttcagattggttggggacatgtgtggaacagatttgcaggtccccttagttgtcacaaccagcataaccaatgtgctttcacaccacttctccctcctgcatggtgggatggtctttggcaatctccactaacaagggatattaataggttggcagactacggcatccagttaactggttttggcaccattgatgaaacacatcttcagtctttttgtagctcaaagaaagttgctgtgaaaactattccgtacatattgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

347

Amino Acids

39.03

Weight (kDa)

9.83

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26950
fragaria_vesca	FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950
malus_domestica	MD09G1007000.v1.1 MD17G1010700.v1.1
prunus_persica	Prupe.3G297400_v2.0.a1 Prupe.3G310100_v2.0.a1 Prupe.3G310100_v2.0.a1
pyrus_communis	pycom111g00520 pycom17g00550
rosa_chinensis	RchiOBHm_Chr2g0176111
rosa_laevigata	RLG00000022382
rosa_multiflora	Rmu_co8462439.1_g000001 Rmu_sc0041131.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076760
rosa_rugosa	Rorug02G0590500 Rorug02G0590600
rosa_samantha	Rh2AG669400 Rh2BG681000 Rh2CG643900 Rh2DG694700
rosa_wichuraiana	Rw2G054910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	437
Acc16I	TGCGCA	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	809
AccB1I	GGYRCC	1 cut(s)	965
AciI	CCGC	1 cut(s)	522
AclWI	GGATC	2 cut(s)	281, 294
AcsI	RAATTY	2 cut(s)	545, 727
AcuI	CTGAAG	2 cut(s)	264, 971
AfaI	GTAC	2 cut(s)	94, 1034
AflII	CTTAAG	1 cut(s)	739
AflIII	ACRYGT	1 cut(s)	799
AgsI	TTSAA	3 cut(s)	127, 502, 752
AjnI	CCWGG	1 cut(s)	401
AleI	CACNNNNGTG	1 cut(s)	648
AluBI	AGCT	5 cut(s)	217, 338, 371, 747, 1002
AluI	AGCT	5 cut(s)	217, 338, 371, 747, 1002
Alw21I	GWGCWC	1 cut(s)	643
AlwI	GGATC	2 cut(s)	281, 294
AoxI	GGCC	3 cut(s)	197, 398, 565
ApaI	GGGCCC	1 cut(s)	569
ApeKI	GCWGC	8 cut(s)	110, 155, 338, 347, 680, 689, 692, 744
ApoI	RAATTY	2 cut(s)	545, 727
AseI	ATTAAT	1 cut(s)	924
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	4 cut(s)	399, 565, 566, 821
AsuHPI	GGTGA	1 cut(s)	343
AsuII	TTCGAA	1 cut(s)	725
AvaII	GGWCC	1 cut(s)	821
BaeGI	GKGCMC	1 cut(s)	569
BamHI	GGATCC	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	965
BanII	GRGCYC	1 cut(s)	569
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	643
BbvCI	CCTCAGC	1 cut(s)	471
BbvI	GCAGC	8 cut(s)	122, 142, 325, 359, 676, 692, 704, 756
BccI	CCATC	3 cut(s)	57, 573, 884
BceAI	ACGGC	2 cut(s)	535, 958
BciT130I	CCWGG	1 cut(s)	403
BfaI	CTAG	1 cut(s)	704
BfmI	CTRYAG	1 cut(s)	690
BfrI	CTTAAG	1 cut(s)	739
BfuAI	ACCTGC	1 cut(s)	809
BisI	GCNGC	8 cut(s)	111, 156, 339, 348, 681, 690, 693, 745
BlsI	GCNGC	8 cut(s)	112, 157, 340, 349, 682, 691, 694, 746
Bme1390I	CCNGG	1 cut(s)	403
Bme18I	GGWCC	1 cut(s)	821
BmgT120I	GGNCC	4 cut(s)	399, 565, 566, 821
BmiI	GGNNCC	6 cut(s)	86, 288, 566, 567, 823, 967
BmrFI	CCNGG	1 cut(s)	403
BmrI	ACTGGG	1 cut(s)	109
BmsI	GCATC	3 cut(s)	369, 617, 954
BmuI	ACTGGG	1 cut(s)	109
BoxI	GACNNNNGTC	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	76
Bpu10I	CCTNAGC	1 cut(s)	471
Bpu14I	TTCGAA	1 cut(s)	725
BpuEI	CTTGAG	1 cut(s)	379
BsaJI	CCNNGG	3 cut(s)	88, 401, 402
BsaXI	ACNNNNNCTCC	2 cut(s)	855, 885
Bse1I	ACTGG	6 cut(s)	59, 115, 690, 724, 949, 961
BseBI	CCWGG	1 cut(s)	403
BseDI	CCNNGG	3 cut(s)	88, 401, 402
BseGI	GGATG	3 cut(s)	136, 895, 945
BseMII	CTCAG	2 cut(s)	462, 683
BseNI	ACTGG	6 cut(s)	59, 115, 690, 724, 949, 961
BseRI	GAGGAG	1 cut(s)	73
BseSI	GKGCMC	1 cut(s)	569
BseXI	GCAGC	8 cut(s)	122, 142, 325, 359, 676, 692, 704, 756
BseYI	CCCAGC	1 cut(s)	568
BsgI	GTGCAG	2 cut(s)	287, 324
BshFI	GGCC	3 cut(s)	199, 400, 567
BshNI	GGYRCC	1 cut(s)	965
BsiHKAI	GWGCWC	1 cut(s)	643
BslFI	GGGAC	4 cut(s)	670, 722, 807, 810
BsmFI	GGGAC	4 cut(s)	670, 722, 807, 810
BsmI	GAATGC	1 cut(s)	318
BsnI	GGCC	3 cut(s)	199, 400, 567
Bsp119I	TTCGAA	1 cut(s)	725
Bsp120I	GGGCCC	1 cut(s)	565
Bsp1286I	GDGCHC	2 cut(s)	569, 643
Bsp143I	GATC	1 cut(s)	286
BspACI	CCGC	1 cut(s)	522
BspANI	GGCC	3 cut(s)	199, 400, 567
BspCNI	CTCAG	2 cut(s)	463, 682
BspHI	TCATGA	1 cut(s)	318
BspLI	GGNNCC	6 cut(s)	86, 288, 566, 567, 823, 967
BspMAI	CTGCAG	1 cut(s)	694
BspMI	ACCTGC	1 cut(s)	809
BspPI	GGATC	2 cut(s)	281, 294
BspT104I	TTCGAA	1 cut(s)	725
BspT107I	GGYRCC	1 cut(s)	965
BspTI	CTTAAG	1 cut(s)	739
BsrI	ACTGG	6 cut(s)	59, 115, 690, 724, 949, 961
BssECI	CCNNGG	3 cut(s)	88, 401, 402
BssMI	GATC	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	403
Bst4CI	ACNGT	1 cut(s)	713
BstAFI	CTTAAG	1 cut(s)	739
BstAPI	GCANNNNNTGC	2 cut(s)	623, 689
BstBI	TTCGAA	1 cut(s)	725
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	4 cut(s)	412, 471, 669, 827
BstF5I	GGATG	3 cut(s)	136, 895, 945
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	7 cut(s)	110, 344, 347, 614, 623, 686, 689
BstNI	CCWGG	1 cut(s)	403
BstNSI	RCATGY	3 cut(s)	310, 626, 803
BstPAI	GACNNNNGTC	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	401
BstSFI	CTRYAG	1 cut(s)	690
BstSLI	GKGCMC	1 cut(s)	569
BstV1I	GCAGC	8 cut(s)	122, 142, 325, 359, 676, 692, 704, 756
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	286
BstXI	CCANNNNNNTGG	1 cut(s)	956
BstYI	RGATCY	1 cut(s)	286
BsuRI	GGCC	3 cut(s)	199, 400, 567
BtsCI	GGATG	3 cut(s)	136, 895, 945
BtsIMutI	CAGTG	1 cut(s)	683
BveI	ACCTGC	1 cut(s)	809
Cac8I	GCNNGC	1 cut(s)	258
CciI	TCATGA	1 cut(s)	318
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	4 cut(s)	399, 565, 566, 821
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	93, 1033
CviAII	CATG	6 cut(s)	43, 307, 319, 623, 800, 882
CviQI	GTAC	2 cut(s)	93, 1033
DdeI	CTNAG	4 cut(s)	412, 471, 669, 827
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	569
Eco47I	GGWCC	1 cut(s)	821
Eco57I	CTGAAG	2 cut(s)	264, 971
EcoO109I	RGGNCCY	2 cut(s)	565, 821
EcoRII	CCWGG	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	569
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	6 cut(s)	46, 310, 322, 626, 803, 885
FaqI	GGGAC	4 cut(s)	670, 722, 807, 810
FatI	CATG	6 cut(s)	42, 306, 318, 622, 799, 881
FauNDI	CATATG	1 cut(s)	664
Fnu4HI	GCNGC	8 cut(s)	111, 156, 339, 348, 681, 690, 693, 745
FokI	GGATG	3 cut(s)	123, 902, 932
FriOI	GRGCYC	1 cut(s)	569
Fsp4HI	GCNGC	8 cut(s)	111, 156, 339, 348, 681, 690, 693, 745
FspBI	CTAG	1 cut(s)	704
FspI	TGCGCA	1 cut(s)	377
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	8 cut(s)	111, 156, 339, 348, 681, 690, 693, 745
GsaI	CCCAGC	1 cut(s)	572
GsuI	CTGGAG	1 cut(s)	76
HaeIII	GGCC	3 cut(s)	199, 400, 567
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	6 cut(s)	46, 310, 322, 626, 803, 885
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HincII	GTYRAC	1 cut(s)	954
HindII	GTYRAC	1 cut(s)	954
HpaI	GTTAAC	1 cut(s)	954
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	2 cut(s)	595, 954
Hpy188I	TCNGA	5 cut(s)	244, 365, 421, 517, 786
Hpy188III	TCNNGA	4 cut(s)	124, 140, 290, 319
Hpy8I	GTNNAC	2 cut(s)	595, 954
HpyAV	CCTTC	3 cut(s)	145, 249, 764
HpyCH4III	ACNGT	1 cut(s)	713
HpyCH4V	TGCA	8 cut(s)	304, 341, 360, 608, 680, 692, 818, 881
HpyF10VI	GCNNNNNNNGC	7 cut(s)	110, 344, 347, 614, 623, 686, 689
HpyF3I	CTNAG	4 cut(s)	412, 471, 669, 827
Hsp92II	CATG	6 cut(s)	46, 310, 322, 626, 803, 885
HspAI	GCGC	1 cut(s)	376
KspAI	GTTAAC	1 cut(s)	954
Kzo9I	GATC	1 cut(s)	286
Lsp1109I	GCAGC	8 cut(s)	122, 142, 325, 359, 676, 692, 704, 756
LweI	GCATC	3 cut(s)	369, 617, 954
MaeI	CTAG	1 cut(s)	704
MaeIII	GTNAC	1 cut(s)	833
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	4 cut(s)	43, 139, 257, 977
MfeI	CAATTG	1 cut(s)	265
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	2 cut(s)	569, 643
MluCI	AATT	6 cut(s)	163, 265, 477, 545, 675, 727
MmeI	TCCRAC	1 cut(s)	740
MnlI	CCTC	7 cut(s)	51, 141, 175, 403, 439, 466, 885
MseI	TTAA	5 cut(s)	674, 740, 776, 924, 953
MslI	CAYNNNNRTG	3 cut(s)	311, 577, 648
MspCI	CTTAAG	1 cut(s)	739
MspR9I	CCNGG	1 cut(s)	403
MunI	CAATTG	1 cut(s)	265
Mva1269I	GAATGC	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	403
MwoI	GCNNNNNNNGC	7 cut(s)	110, 344, 347, 614, 623, 686, 689
NdeI	CATATG	1 cut(s)	664
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	6 cut(s)	46, 310, 322, 626, 803, 885
NlaIV	GGNNCC	6 cut(s)	86, 288, 566, 567, 823, 967
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	833
NsbI	TGCGCA	1 cut(s)	377
NspI	RCATGY	3 cut(s)	310, 626, 803
NspV	TTCGAA	1 cut(s)	725
OliI	CACNNNNGTG	1 cut(s)	648
PagI	TCATGA	1 cut(s)	318
PasI	CCCWGGG	1 cut(s)	402
PciI	ACATGT	1 cut(s)	799
PcsI	WCGNNNNNNNCGW	1 cut(s)	731
PctI	GAATGC	1 cut(s)	318
PkrI	GCNGC	8 cut(s)	112, 157, 340, 349, 682, 691, 694, 746
PpuMI	RGGWCCY	1 cut(s)	821
PscI	ACATGT	1 cut(s)	799
PshAI	GACNNNNGTC	1 cut(s)	38
PshBI	ATTAAT	1 cut(s)	924
PsiI	TTATAA	1 cut(s)	437
Psp5II	RGGWCCY	1 cut(s)	821
Psp6I	CCWGG	1 cut(s)	401
PspFI	CCCAGC	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	401
PspN4I	GGNNCC	6 cut(s)	86, 288, 566, 567, 823, 967
PspOMI	GGGCCC	1 cut(s)	565
PspPI	GGNCC	4 cut(s)	399, 565, 566, 821
PspPPI	RGGWCCY	1 cut(s)	821
PstI	CTGCAG	1 cut(s)	694
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	2 cut(s)	94, 1034
RsaNI	GTAC	2 cut(s)	93, 1033
RseI	CAYNNNNRTG	3 cut(s)	311, 577, 648
SaqAI	TTAA	5 cut(s)	674, 740, 776, 924, 953
SatI	GCNGC	8 cut(s)	111, 156, 339, 348, 681, 690, 693, 745
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	4 cut(s)	399, 565, 566, 821
ScrFI	CCNGG	1 cut(s)	403
SduI	GDGCHC	2 cut(s)	569, 643
SfaNI	GCATC	3 cut(s)	369, 617, 954
SfcI	CTRYAG	1 cut(s)	690
SfuI	TTCGAA	1 cut(s)	725
SinI	GGWCC	1 cut(s)	821
SmiMI	CAYNNNNRTG	3 cut(s)	311, 577, 648
SmlI	CTYRAG	2 cut(s)	394, 739
SmoI	CTYRAG	2 cut(s)	394, 739
Sse9I	AATT	6 cut(s)	163, 265, 477, 545, 675, 727
SsiI	CCGC	1 cut(s)	522
SspMI	CTAG	1 cut(s)	704
StyD4I	CCNGG	1 cut(s)	401
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	713
TaqI	TCGA	1 cut(s)	725
TasI	AATT	6 cut(s)	163, 265, 477, 545, 675, 727
Tru1I	TTAA	5 cut(s)	674, 740, 776, 924, 953
Tru9I	TTAA	5 cut(s)	674, 740, 776, 924, 953
TscAI	CASTG	1 cut(s)	690
TseFI	GTSAC	1 cut(s)	833
TseI	GCWGC	8 cut(s)	110, 155, 338, 347, 680, 689, 692, 744
Tsp45I	GTSAC	1 cut(s)	833
TspDTI	ATGAA	4 cut(s)	44, 335, 470, 990
TspGWI	ACGGA	1 cut(s)	1020
TspRI	CASTG	1 cut(s)	690
Vha464I	CTTAAG	1 cut(s)	739
VpaK11BI	GGWCC	1 cut(s)	821
VspI	ATTAAT	1 cut(s)	924
XapI	RAATTY	2 cut(s)	545, 727
XceI	RCATGY	3 cut(s)	310, 626, 803
XcmI	CCANNNNNNNNNTGG	1 cut(s)	576
XspI	CTAG	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.