Rh2AG669400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0005445
Physical Location & Seq
Forward (+)
88363198 .. 88366531
3334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG669400.1

Sequence Viewer

Length: 1206 bp
ATGACGAGGAGGCATGGCGTATGGAGAAGGAGACGAGTTTCTGTAGGGTCAATTCTGATATTCGGTGCAATTTTTGTCGGAATCGGATTGCTGATTCTCAACTTAAGACCTGTCCATGATGATTCTCCAACGACAACGAGCCGCGATTTCCGTGTTGAAATTCACGACTCGGTTTCGATTTCGGAGTCGGAGTCGAAGTCGAACTCTGAGAGCGGTGCTGGTGCTGGAGTTGGGGTTGAGTCGGAGACTCGGAGCAGCGAGAGTAAGAGTAAGAGTAAGAGAAAATCGAGCTCGTGTGCTTCGGTGGAAGAGATGGGAAAGGAGTTTGAAGGAGGGTTTTGGGATGAAAGTTTCAGAGTGAGGAAACTTATTCAAAATCACTTTGAATTGAATGGTGCTTCGAGGGTGCGGAATCTTCCTCCACAACAGTTTTGCCAGCATGGTTTTGTGCTTGGTAAATCAGCAGAGGCAGGCTTCGGGAATGAAATGTACAAGATCTTAAGTGGTGCAGCACTGAGTGTGATGTTAAACCGGTCCCTGATTATTGGGCAAACCAGGGGAAAATTCCCTTTTGGGGATTACATTTCTTATTCCAACCTTTCTTTTACAATGAAAGAAATCAAGCATCTGTGGAGACTTAATAAATGTGTAAAGAAGTACGGAAGGCAACTGATTATGAGGACTGATGACTTTGAGAAACCAATGAAGACAAATGTCCTGTGTAGCAACTGGAGGAGATGGAAGCAACCTATTATATGGTTCCAAGGTACAAATGACGCTGTGGCAGCCCAGTTTTTCTTGAAGAATATACATCCAGAGATGAGGAAGGCTGCTTCTAATTTATTTGGAAAGCCAGAGGTTCTCCGTTCTCGGCCTAATGTATTTGGAGAGCTGATGAGAGTGCTTATATCTCCTTCTGAAGATGTTGAGCAAGCAATCAATTGGATTATCGGTGGAGTGGATCCTGATATTTCTCTGCACATGCGAATGCTCATGAATAGGTCGGTGAGAGCTGCACAGGCAGCACTAAACTGCATCAGAAAAGCTGTGCGCAATCTTGGTAAAGCCTCAAGGCCCAGGGTGGTCTTAGTGTCAGATACCCCCTCTCTTATAAAAAGTATTACACTGAATATAAGCAAGTTTGCAGAGGTACTTTACTTGATGTGCGGAGAATGGCCAAATCATATTGCATCATCAGCATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

401

Amino Acids

45.09

Weight (kDa)

9.91

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7810 PF25102 95 - 392 3.1e-157 Family of unknown function (DUF7810)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1112
Acc16I TGCGCA 1 cut(s) 1052
AccBSI CCGCTC 1 cut(s) 213
AccII CGCG 1 cut(s) 144
AciI CCGC 4 cut(s) 142, 213, 409, 1167
AclWI GGATC 2 cut(s) 956, 969
AcoI YGGCCR 1 cut(s) 1175
AcsI RAATTY 2 cut(s) 159, 563
AcuI CTGAAG 1 cut(s) 939
AdeI CACNNNGTG 1 cut(s) 518
AfaI GTAC 4 cut(s) 491, 659, 769, 1152
AfiI CCNNNNNNNGG 1 cut(s) 574
AflII CTTAAG 2 cut(s) 103, 499
AgeI ACCGGT 1 cut(s) 531
AgsI TTSAA 6 cut(s) 158, 329, 374, 386, 391, 802
AjnI CCWGG 2 cut(s) 554, 1076
AluBI AGCT 4 cut(s) 291, 892, 1013, 1046
AluI AGCT 4 cut(s) 291, 892, 1013, 1046
Alw21I GWGCWC 1 cut(s) 293
Alw26I GTCTC 3 cut(s) 25, 239, 628
AlwI GGATC 2 cut(s) 956, 969
AoxI GGCC 3 cut(s) 872, 1073, 1175
ApeKI GCWGC 6 cut(s) 255, 509, 785, 830, 1013, 1022
ApoI RAATTY 2 cut(s) 159, 563
AsiGI ACCGGT 1 cut(s) 531
AspLEI GCGC 1 cut(s) 1053
AspS9I GGNCC 2 cut(s) 534, 1074
AsuHPI GGTGA 1 cut(s) 1018
AvaII GGWCC 1 cut(s) 534
BalI TGGCCA 1 cut(s) 1177
BamHI GGATCC 1 cut(s) 961
BanII GRGCYC 1 cut(s) 293
BauI CACGAG 1 cut(s) 292
BbsI GAAGAC 1 cut(s) 713
Bbv12I GWGCWC 1 cut(s) 293
BbvI GCAGC 6 cut(s) 267, 521, 797, 817, 1000, 1034
BccI CCATC 2 cut(s) 307, 732
BciT130I CCWGG 2 cut(s) 556, 1078
BcoDI GTCTC 3 cut(s) 25, 239, 628
BfmI CTRYAG 1 cut(s) 42
BfrI CTTAAG 2 cut(s) 103, 499
BglII AGATCT 1 cut(s) 495
BisI GCNGC 7 cut(s) 142, 256, 510, 786, 831, 1014, 1023
BlsI GCNGC 7 cut(s) 143, 257, 511, 787, 832, 1015, 1024
Bme1390I CCNGG 2 cut(s) 556, 1078
Bme18I GGWCC 1 cut(s) 534
BmgT120I GGNCC 2 cut(s) 534, 1074
BmiI GGNNCC 3 cut(s) 536, 761, 963
BmrFI CCNGG 2 cut(s) 556, 1078
BmrI ACTGGG 1 cut(s) 784
BmsI GCATC 3 cut(s) 634, 1044, 1199
BmuI ACTGGG 1 cut(s) 784
BoxI GACNNNNGTC 1 cut(s) 713
BpiI GAAGAC 1 cut(s) 713
BpmI CTGGAG 2 cut(s) 246, 751
BpuEI CTTGAG 1 cut(s) 1054
BsaJI CCNNGG 4 cut(s) 555, 763, 1076, 1077
BsaWI WCCGGW 1 cut(s) 531
BsaXI ACNNNNNCTCC 6 cut(s) 176, 182, 206, 212, 219, 249
Bsc4I CCNNNNNNNGG 1 cut(s) 574
Bse118I RCCGGY 1 cut(s) 531
Bse1I ACTGG 2 cut(s) 734, 790
BseBI CCWGG 2 cut(s) 556, 1078
BseDI CCNNGG 4 cut(s) 555, 763, 1076, 1077
BseGI GGATG 2 cut(s) 349, 811
BseLI CCNNNNNNNGG 1 cut(s) 574
BseMII CTCAG 2 cut(s) 198, 506
BseNI ACTGG 2 cut(s) 734, 790
BseRI GAGGAG 2 cut(s) 22, 748
BseXI GCAGC 6 cut(s) 267, 521, 797, 817, 1000, 1034
BsgI GTGCAG 3 cut(s) 528, 962, 999
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 3 cut(s) 874, 1075, 1177
BshTI ACCGGT 1 cut(s) 531
BsiHKAI GWGCWC 1 cut(s) 293
BsiSI CCGG 1 cut(s) 532
BslFI GGGAC 1 cut(s) 520
BslI CCNNNNNNNGG 1 cut(s) 574
BsmAI GTCTC 3 cut(s) 25, 239, 628
BsmBI CGTCTC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 520
BsmI GAATGC 1 cut(s) 993
BsnI GGCC 3 cut(s) 874, 1075, 1177
Bsp1286I GDGCHC 1 cut(s) 293
Bsp1407I TGTACA 1 cut(s) 489
Bsp143I GATC 2 cut(s) 495, 961
BspACI CCGC 4 cut(s) 142, 213, 409, 1167
BspANI GGCC 3 cut(s) 874, 1075, 1177
BspCNI CTCAG 2 cut(s) 199, 507
BspFNI CGCG 1 cut(s) 144
BspHI TCATGA 1 cut(s) 993
BspLI GGNNCC 3 cut(s) 536, 761, 963
BspPI GGATC 2 cut(s) 956, 969
BspTI CTTAAG 2 cut(s) 103, 499
BsrBI CCGCTC 1 cut(s) 213
BsrFI RCCGGY 1 cut(s) 531
BsrGI TGTACA 1 cut(s) 489
BsrI ACTGG 2 cut(s) 734, 790
BssAI RCCGGY 1 cut(s) 531
BssECI CCNNGG 4 cut(s) 555, 763, 1076, 1077
BssMI GATC 2 cut(s) 495, 961
BssSI CACGAG 1 cut(s) 292
BssT1I CCWWGG 1 cut(s) 763
Bst2BI CACGAG 1 cut(s) 292
Bst2UI CCWGG 2 cut(s) 556, 1078
Bst4CI ACNGT 1 cut(s) 429
Bst6I CTCTTC 1 cut(s) 303
BstAFI CTTAAG 2 cut(s) 103, 499
BstAUI TGTACA 1 cut(s) 489
BstC8I GCNNGC 4 cut(s) 437, 472, 933, 1201
BstDEI CTNAG 3 cut(s) 207, 515, 1087
BstF5I GGATG 2 cut(s) 349, 811
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 1053
BstKTI GATC 2 cut(s) 498, 964
BstMAI GTCTC 3 cut(s) 25, 239, 628
BstMBI GATC 2 cut(s) 495, 961
BstMWI GCNNNNNNNGC 4 cut(s) 785, 1019, 1022, 1196
BstNI CCWGG 2 cut(s) 556, 1078
BstNSI RCATGY 2 cut(s) 985, 1203
BstPAI GACNNNNGTC 1 cut(s) 713
BstSCI CCNGG 2 cut(s) 554, 1076
BstSFI CTRYAG 1 cut(s) 42
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 6 cut(s) 267, 521, 797, 817, 1000, 1034
BstV2I GAAGAC 1 cut(s) 713
BstX2I RGATCY 2 cut(s) 495, 961
BstYI RGATCY 2 cut(s) 495, 961
BsuRI GGCC 3 cut(s) 874, 1075, 1177
BtsCI GGATG 2 cut(s) 349, 811
BtsIMutI CAGTG 2 cut(s) 512, 1124
Cac8I GCNNGC 4 cut(s) 437, 472, 933, 1201
CciI TCATGA 1 cut(s) 993
CfoI GCGC 1 cut(s) 1053
Cfr10I RCCGGY 1 cut(s) 531
Cfr13I GGNCC 2 cut(s) 534, 1074
CseI GACGC 1 cut(s) 785
Csp6I GTAC 4 cut(s) 490, 658, 768, 1151
CspAI ACCGGT 1 cut(s) 531
CviAII CATG 6 cut(s) 14, 116, 440, 982, 994, 1200
CviQI GTAC 4 cut(s) 490, 658, 768, 1151
DdeI CTNAG 3 cut(s) 207, 515, 1087
DpnI GATC 2 cut(s) 497, 963
DpnII GATC 2 cut(s) 495, 961
DraIII CACNNNGTG 1 cut(s) 518
EaeI YGGCCR 1 cut(s) 1175
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Ecl136II GAGCTC 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 763
Eco24I GRGCYC 1 cut(s) 293
Eco47I GGWCC 1 cut(s) 534
Eco53kI GAGCTC 1 cut(s) 291
Eco57I CTGAAG 1 cut(s) 939
EcoICRI GAGCTC 1 cut(s) 291
EcoRII CCWGG 2 cut(s) 554, 1076
EcoT14I CCWWGG 1 cut(s) 763
EcoT38I GRGCYC 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 763
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 6 cut(s) 17, 119, 443, 985, 997, 1203
FaqI GGGAC 1 cut(s) 520
FatI CATG 6 cut(s) 13, 115, 439, 981, 993, 1199
Fnu4HI GCNGC 7 cut(s) 142, 256, 510, 786, 831, 1014, 1023
FokI GGATG 2 cut(s) 356, 798
FriOI GRGCYC 1 cut(s) 293
Fsp4HI GCNGC 7 cut(s) 142, 256, 510, 786, 831, 1014, 1023
FspI TGCGCA 1 cut(s) 1052
GlaI GCGC 1 cut(s) 1052
GluI GCNGC 7 cut(s) 142, 256, 510, 786, 831, 1014, 1023
GsuI CTGGAG 2 cut(s) 246, 751
HaeIII GGCC 3 cut(s) 874, 1075, 1177
HapII CCGG 1 cut(s) 532
HgaI GACGC 1 cut(s) 785
HhaI GCGC 1 cut(s) 1053
Hin1II CATG 6 cut(s) 17, 119, 443, 985, 997, 1203
Hin6I GCGC 1 cut(s) 1051
HinP1I GCGC 1 cut(s) 1051
HinfI GANTC 9 cut(s) 81, 94, 122, 167, 185, 191, 239, 247, 412
HpaII CCGG 1 cut(s) 532
HphI GGTGA 1 cut(s) 1018
Hpy188III TCNNGA 6 cut(s) 164, 478, 799, 815, 965, 994
HpyAV CCTTC 5 cut(s) 21, 323, 657, 820, 924
HpyCH4III ACNGT 1 cut(s) 429
HpyCH4V TGCA 7 cut(s) 68, 509, 979, 1016, 1035, 1145, 1190
HpyF10VI GCNNNNNNNGC 4 cut(s) 785, 1019, 1022, 1196
HpyF3I CTNAG 3 cut(s) 207, 515, 1087
Hsp92II CATG 6 cut(s) 17, 119, 443, 985, 997, 1203
HspAI GCGC 1 cut(s) 1051
Kzo9I GATC 2 cut(s) 495, 961
LmnI GCTCC 1 cut(s) 252
Lsp1109I GCAGC 6 cut(s) 267, 521, 797, 817, 1000, 1034
LweI GCATC 3 cut(s) 634, 1044, 1199
MalI GATC 2 cut(s) 497, 963
MbiI CCGCTC 1 cut(s) 213
MboI GATC 2 cut(s) 495, 961
MboII GAAGA 5 cut(s) 320, 407, 718, 814, 932
MfeI CAATTG 1 cut(s) 940
MflI RGATCY 2 cut(s) 495, 961
MhlI GDGCHC 1 cut(s) 293
MlsI TGGCCA 1 cut(s) 1177
MluCI AATT 7 cut(s) 51, 69, 159, 386, 563, 838, 940
MluNI TGGCCA 1 cut(s) 1177
MlyI GAGTC 5 cut(s) 161, 194, 200, 241, 248
MmeI TCCRAC 5 cut(s) 58, 152, 168, 222, 618
Mox20I TGGCCA 1 cut(s) 1177
MscI TGGCCA 1 cut(s) 1177
MseI TTAA 4 cut(s) 104, 500, 527, 639
MslI CAYNNNNRTG 2 cut(s) 986, 1198
Msp20I TGGCCA 1 cut(s) 1177
MspCI CTTAAG 2 cut(s) 103, 499
MspI CCGG 1 cut(s) 532
MspR9I CCNGG 2 cut(s) 556, 1078
MunI CAATTG 1 cut(s) 940
Mva1269I GAATGC 1 cut(s) 993
MvaI CCWGG 2 cut(s) 556, 1078
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 4 cut(s) 785, 1019, 1022, 1196
NdeII GATC 2 cut(s) 495, 961
NlaIII CATG 6 cut(s) 17, 119, 443, 985, 997, 1203
NlaIV GGNNCC 3 cut(s) 536, 761, 963
NmeAIII GCCGAG 1 cut(s) 850
NsbI TGCGCA 1 cut(s) 1052
NspI RCATGY 2 cut(s) 985, 1203
PaeI GCATGC 1 cut(s) 1203
PagI TCATGA 1 cut(s) 993
PasI CCCWGGG 1 cut(s) 1077
PctI GAATGC 1 cut(s) 993
PfeI GAWTC 4 cut(s) 81, 94, 122, 412
PinAI ACCGGT 1 cut(s) 531
PkrI GCNGC 7 cut(s) 143, 257, 511, 787, 832, 1015, 1024
PleI GAGTC 5 cut(s) 161, 193, 199, 241, 247
PpsI GAGTC 5 cut(s) 161, 193, 199, 241, 247
PshAI GACNNNNGTC 1 cut(s) 713
PsiI TTATAA 1 cut(s) 1112
Psp124BI GAGCTC 1 cut(s) 293
Psp6I CCWGG 2 cut(s) 554, 1076
PspGI CCWGG 2 cut(s) 554, 1076
PspN4I GGNNCC 3 cut(s) 536, 761, 963
PspPI GGNCC 2 cut(s) 534, 1074
PsuI RGATCY 2 cut(s) 495, 961
RsaI GTAC 4 cut(s) 491, 659, 769, 1152
RsaNI GTAC 4 cut(s) 490, 658, 768, 1151
RseI CAYNNNNRTG 2 cut(s) 986, 1198
SacI GAGCTC 1 cut(s) 293
SaqAI TTAA 4 cut(s) 104, 500, 527, 639
SatI GCNGC 7 cut(s) 142, 256, 510, 786, 831, 1014, 1023
Sau3AI GATC 2 cut(s) 495, 961
Sau96I GGNCC 2 cut(s) 534, 1074
SchI GAGTC 5 cut(s) 161, 194, 200, 241, 248
ScrFI CCNGG 2 cut(s) 556, 1078
SduI GDGCHC 1 cut(s) 293
SfaNI GCATC 3 cut(s) 634, 1044, 1199
SfcI CTRYAG 1 cut(s) 42
SinI GGWCC 1 cut(s) 534
SmiMI CAYNNNNRTG 2 cut(s) 986, 1198
SmlI CTYRAG 3 cut(s) 103, 499, 1069
SmoI CTYRAG 3 cut(s) 103, 499, 1069
SphI GCATGC 1 cut(s) 1203
Sse9I AATT 7 cut(s) 51, 69, 159, 386, 563, 838, 940
SsiI CCGC 4 cut(s) 142, 213, 409, 1167
SstI GAGCTC 1 cut(s) 293
StyD4I CCNGG 2 cut(s) 554, 1076
StyI CCWWGG 1 cut(s) 763
TaaI ACNGT 1 cut(s) 429
TaqI TCGA 5 cut(s) 176, 194, 200, 287, 401
TasI AATT 7 cut(s) 51, 69, 159, 386, 563, 838, 940
TatI WGTACW 1 cut(s) 489
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 4 cut(s) 81, 94, 122, 412
Tru1I TTAA 4 cut(s) 104, 500, 527, 639
Tru9I TTAA 4 cut(s) 104, 500, 527, 639
TscAI CASTG 2 cut(s) 519, 1131
TseI GCWGC 6 cut(s) 255, 509, 785, 830, 1013, 1022
TspDTI ATGAA 5 cut(s) 360, 498, 626, 719, 1010
TspGWI ACGGA 3 cut(s) 140, 675, 854
TspRI CASTG 2 cut(s) 519, 1131
Vha464I CTTAAG 2 cut(s) 103, 499
VpaK11BI GGWCC 1 cut(s) 534
XapI RAATTY 2 cut(s) 159, 563
XceI RCATGY 2 cut(s) 985, 1203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.