Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005445

Physical Location & Seq

Genomic Coordinates Reverse (-)

394736 .. 396042

Gene Structure 1307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g00550.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAAGGAAAAGATGAGCTATGGCGTTTGGCGAAGGAGGCGGGTGTCCGTCGGATCAATTCTGATAGTCTGTGCGTTGTGTGCTGGAACGGGGCTGTTGATGCTCAACTTACGACAAGTCGATCCTCCGACGAGCCCCGATTTCTATATGCAGATTGGAAATTTGGATTCGGAGTCTGAAAACGGCGGCGGAGTTGAGCTGGAGACGGAGCCGCAGAGCAAGAGTAAGCGAAATTCGAGCTCGTGCGCGACGGTGGAGGAGATGGGAAAGGAGTTCGAAGGAGGAGGGTTTTGGGAGGAGAGTCTCAGAGTCAGGAAGTTTATTCAGCATCACTTTGACTTGAATGGTGCTTCCAGGGTAAGAAATCTTCCACCGGAACAGTTTTGTCGGCACGGATTTGTGATGGGTAAAGCATCAGAGGCGGGTTTCGGGAACGAAATGTACAAAATCTTAAGTGGTGCAGCGTTGAGTATAATGTTGAACCGGTCCCCGATCATTGGTCAAACCAGGGGAAAATTCCCTTTTGAGGATTACATTTCCTATTCCAATTTTTCCTTCACCATCAGAGAAATTAAGCATCTTTGGAGACTTAATAAATGTGCAAACAAGTATGGAAGGCAACTGGTTATGAGAAGTGATGACTTTGAGAAGCCGGCACAGACCAATGTTCTTTGTAGCAACTGGATAGAATGGAAGCAACCCATTATATGGTTCCAAGGGACGAACGATGCTGTGGCAGCCCAGTTTTTCTTGAAGAATATCCACCCTGAGATGAGGAATGCTGCTTCTACTTTATTTGGGAAGCCAGAGGATCGATCCATTCTCGGCCTAATGTATTTGGGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

31.97

Weight (kDa)

8.85

Isoelectric Point (pI)

56.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26950
fragaria_vesca	FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950 FvH4_6g53950
malus_domestica	MD09G1007000.v1.1 MD17G1010700.v1.1
prunus_persica	Prupe.3G297400_v2.0.a1 Prupe.3G310100_v2.0.a1 Prupe.3G310100_v2.0.a1
pyrus_communis	pycom111g00520 pycom17g00550
rosa_chinensis	RchiOBHm_Chr2g0176111
rosa_laevigata	RLG00000022382
rosa_multiflora	Rmu_co8462439.1_g000001 Rmu_sc0041131.1_g000002
rosa_roxburghii	Rroxscaffold_2G00076760
rosa_rugosa	Rorug02G0590500 Rorug02G0590600
rosa_samantha	Rh2AG669400 Rh2BG681000 Rh2CG643900 Rh2DG694700
rosa_wichuraiana	Rw2G054910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	708
AccII	CGCG	1 cut(s)	248
AciI	CCGC	5 cut(s)	40, 186, 189, 212, 422
AclWI	GGATC	4 cut(s)	61, 116, 810, 819
AcsI	RAATTY	3 cut(s)	160, 232, 515
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	3 cut(s)	497, 526, 708
AflII	CTTAAG	1 cut(s)	451
AgeI	ACCGGT	1 cut(s)	483
AgsI	TTSAA	3 cut(s)	343, 481, 754
AjnI	CCWGG	2 cut(s)	353, 506
AjuI	GAANNNNNNNTTGG	2 cut(s)	539, 571
AluBI	AGCT	4 cut(s)	18, 199, 240, 846
AluI	AGCT	4 cut(s)	18, 199, 240, 846
Alw21I	GWGCWC	1 cut(s)	242
Alw26I	GTCTC	3 cut(s)	197, 308, 580
AlwI	GGATC	4 cut(s)	61, 116, 810, 819
AoxI	GGCC	1 cut(s)	826
ApeKI	GCWGC	3 cut(s)	461, 737, 782
ApoI	RAATTY	3 cut(s)	160, 232, 515
AsiGI	ACCGGT	1 cut(s)	483
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	486
AsuHPI	GGTGA	1 cut(s)	550
AsuII	TTCGAA	1 cut(s)	276
AvaII	GGWCC	1 cut(s)	486
BanII	GRGCYC	2 cut(s)	137, 242
BarI	GAAGNNNNNNTAC	2 cut(s)	351, 383
BauI	CACGAG	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	242
BbvI	GCAGC	3 cut(s)	473, 749, 769
BccI	CCATC	3 cut(s)	256, 397, 569
BceAI	ACGGC	1 cut(s)	199
BciT130I	CCWGG	2 cut(s)	355, 508
BcoDI	GTCTC	3 cut(s)	197, 308, 580
BfrI	CTTAAG	1 cut(s)	451
BisI	GCNGC	5 cut(s)	187, 212, 462, 738, 783
BlsI	GCNGC	5 cut(s)	188, 213, 463, 739, 784
Bme1390I	CCNGG	2 cut(s)	355, 508
Bme18I	GGWCC	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	486
BmiI	GGNNCC	3 cut(s)	210, 488, 713
BmrFI	CCNGG	2 cut(s)	355, 508
BmrI	ACTGGG	1 cut(s)	736
BmsI	GCATC	5 cut(s)	90, 337, 422, 586, 718
BmuI	ACTGGG	1 cut(s)	736
BpmI	CTGGAG	1 cut(s)	221
Bpu14I	TTCGAA	1 cut(s)	276
Bsa29I	ATCGAT	1 cut(s)	814
BsaJI	CCNNGG	3 cut(s)	354, 507, 715
BsaWI	WCCGGW	2 cut(s)	373, 483
Bsc4I	CCNNNNNNNGG	3 cut(s)	497, 526, 708
Bse118I	RCCGGY	2 cut(s)	483, 652
Bse1I	ACTGG	3 cut(s)	627, 686, 742
BseBI	CCWGG	2 cut(s)	355, 508
BseCI	ATCGAT	1 cut(s)	814
BseDI	CCNNGG	3 cut(s)	354, 507, 715
BseLI	CCNNNNNNNGG	3 cut(s)	497, 526, 708
BseMII	CTCAG	2 cut(s)	319, 759
BseNI	ACTGG	3 cut(s)	627, 686, 742
BseRI	GAGGAG	3 cut(s)	272, 297, 311
BseXI	GCAGC	3 cut(s)	473, 749, 769
BsgI	GTGCAG	1 cut(s)	480
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	1 cut(s)	828
BshTI	ACCGGT	1 cut(s)	483
BshVI	ATCGAT	1 cut(s)	814
BsiHKAI	GWGCWC	1 cut(s)	242
BsiSI	CCGG	3 cut(s)	374, 484, 653
BslFI	GGGAC	2 cut(s)	472, 733
BslI	CCNNNNNNNGG	3 cut(s)	497, 526, 708
BsmAI	GTCTC	3 cut(s)	197, 308, 580
BsmBI	CGTCTC	1 cut(s)	197
BsmFI	GGGAC	2 cut(s)	472, 733
BsmI	GAATGC	1 cut(s)	784
BsnI	GGCC	1 cut(s)	828
Bsp119I	TTCGAA	1 cut(s)	276
Bsp1286I	GDGCHC	2 cut(s)	137, 242
Bsp1407I	TGTACA	1 cut(s)	441
Bsp143I	GATC	5 cut(s)	53, 121, 492, 811, 815
BspACI	CCGC	5 cut(s)	40, 186, 189, 212, 422
BspANI	GGCC	1 cut(s)	828
BspCNI	CTCAG	2 cut(s)	318, 760
BspDI	ATCGAT	1 cut(s)	814
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	3 cut(s)	210, 488, 713
BspPI	GGATC	4 cut(s)	61, 116, 810, 819
BspT104I	TTCGAA	1 cut(s)	276
BspTI	CTTAAG	1 cut(s)	451
BsrFI	RCCGGY	2 cut(s)	483, 652
BsrGI	TGTACA	1 cut(s)	441
BsrI	ACTGG	3 cut(s)	627, 686, 742
BssAI	RCCGGY	2 cut(s)	483, 652
BssECI	CCNNGG	3 cut(s)	354, 507, 715
BssMI	GATC	5 cut(s)	53, 121, 492, 811, 815
BssSI	CACGAG	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	715
Bst2BI	CACGAG	1 cut(s)	241
Bst2UI	CCWGG	2 cut(s)	355, 508
Bst4CI	ACNGT	2 cut(s)	253, 381
BstAFI	CTTAAG	1 cut(s)	451
BstAUI	TGTACA	1 cut(s)	441
BstBI	TTCGAA	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	654
BstDEI	CTNAG	2 cut(s)	305, 768
BstFNI	CGCG	1 cut(s)	248
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	5 cut(s)	56, 124, 495, 814, 818
BstMAI	GTCTC	3 cut(s)	197, 308, 580
BstMBI	GATC	5 cut(s)	53, 121, 492, 811, 815
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 80, 100, 419, 737
BstNI	CCWGG	2 cut(s)	355, 508
BstSCI	CCNGG	2 cut(s)	353, 506
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	3 cut(s)	473, 749, 769
Bsu15I	ATCGAT	1 cut(s)	814
BsuRI	GGCC	1 cut(s)	828
BsuTUI	ATCGAT	1 cut(s)	814
Cac8I	GCNNGC	1 cut(s)	654
CfoI	GCGC	1 cut(s)	248
Cfr10I	RCCGGY	2 cut(s)	483, 652
Cfr13I	GGNCC	1 cut(s)	486
ClaI	ATCGAT	1 cut(s)	814
Csp6I	GTAC	1 cut(s)	442
CspAI	ACCGGT	1 cut(s)	483
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	2 cut(s)	305, 768
DpnI	GATC	5 cut(s)	55, 123, 494, 813, 817
DpnII	GATC	5 cut(s)	53, 121, 492, 811, 815
EciI	GGCGGA	1 cut(s)	204
Ecl136II	GAGCTC	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	715
Eco24I	GRGCYC	2 cut(s)	137, 242
Eco47I	GGWCC	1 cut(s)	486
Eco53kI	GAGCTC	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	240
EcoRII	CCWGG	2 cut(s)	353, 506
EcoT14I	CCWWGG	1 cut(s)	715
EcoT38I	GRGCYC	2 cut(s)	137, 242
ErhI	CCWWGG	1 cut(s)	715
Esp3I	CGTCTC	1 cut(s)	197
FaiI	YATR	8 cut(s)	21, 147, 149, 473, 612, 629, 707, 709
FaqI	GGGAC	2 cut(s)	472, 733
FauI	CCCGC	2 cut(s)	33, 415
Fnu4HI	GCNGC	5 cut(s)	187, 212, 462, 738, 783
FriOI	GRGCYC	2 cut(s)	137, 242
Fsp4HI	GCNGC	5 cut(s)	187, 212, 462, 738, 783
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	5 cut(s)	187, 212, 462, 738, 783
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	828
HapII	CCGG	3 cut(s)	374, 484, 653
HhaI	GCGC	1 cut(s)	248
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HinfI	GANTC	4 cut(s)	167, 173, 301, 309
HpaII	CCGG	3 cut(s)	374, 484, 653
HphI	GGTGA	1 cut(s)	550
Hpy188I	TCNGA	8 cut(s)	53, 63, 129, 172, 178, 308, 418, 566
Hpy188III	TCNNGA	3 cut(s)	313, 430, 751
Hpy99I	CGWCG	3 cut(s)	53, 133, 253
HpyAV	CCTTC	4 cut(s)	27, 272, 565, 609
HpyCH4III	ACNGT	2 cut(s)	253, 381
HpyCH4V	TGCA	3 cut(s)	151, 461, 602
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 80, 100, 419, 737
HpyF3I	CTNAG	2 cut(s)	305, 768
HspAI	GCGC	1 cut(s)	246
KroI	GCCGGC	1 cut(s)	652
KroNI	GCCGGC	1 cut(s)	654
Kzo9I	GATC	5 cut(s)	53, 121, 492, 811, 815
LmnI	GCTCC	2 cut(s)	208, 843
Lsp1109I	GCAGC	3 cut(s)	473, 749, 769
LweI	GCATC	5 cut(s)	90, 337, 422, 586, 718
MalI	GATC	5 cut(s)	55, 123, 494, 813, 817
MboI	GATC	5 cut(s)	53, 121, 492, 811, 815
MboII	GAAGA	2 cut(s)	359, 766
MhlI	GDGCHC	2 cut(s)	137, 242
MluCI	AATT	6 cut(s)	57, 160, 232, 515, 547, 570
MlyI	GAGTC	3 cut(s)	182, 310, 318
MmeI	TCCRAC	2 cut(s)	31, 152
MroNI	GCCGGC	1 cut(s)	652
MseI	TTAA	3 cut(s)	452, 573, 591
MspCI	CTTAAG	1 cut(s)	451
MspI	CCGG	3 cut(s)	374, 484, 653
MspR9I	CCNGG	2 cut(s)	355, 508
Mva1269I	GAATGC	1 cut(s)	784
MvaI	CCWGG	2 cut(s)	355, 508
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	5 cut(s)	37, 80, 100, 419, 737
NaeI	GCCGGC	1 cut(s)	654
NdeII	GATC	5 cut(s)	53, 121, 492, 811, 815
NgoMIV	GCCGGC	1 cut(s)	652
NlaIV	GGNNCC	3 cut(s)	210, 488, 713
NmeAIII	GCCGAG	1 cut(s)	804
NspV	TTCGAA	1 cut(s)	276
PctI	GAATGC	1 cut(s)	784
PdiI	GCCGGC	1 cut(s)	654
PfeI	GAWTC	1 cut(s)	167
PflMI	CCANNNNNTGG	1 cut(s)	708
PinAI	ACCGGT	1 cut(s)	483
PkrI	GCNGC	5 cut(s)	188, 213, 463, 739, 784
PleI	GAGTC	3 cut(s)	181, 309, 317
PpsI	GAGTC	3 cut(s)	181, 309, 317
Psp124BI	GAGCTC	1 cut(s)	242
Psp6I	CCWGG	2 cut(s)	353, 506
PspGI	CCWGG	2 cut(s)	353, 506
PspN4I	GGNNCC	3 cut(s)	210, 488, 713
PspPI	GGNCC	1 cut(s)	486
PsrI	GAACNNNNNNTAC	2 cut(s)	425, 457
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
SacI	GAGCTC	1 cut(s)	242
SaqAI	TTAA	3 cut(s)	452, 573, 591
SatI	GCNGC	5 cut(s)	187, 212, 462, 738, 783
Sau3AI	GATC	5 cut(s)	53, 121, 492, 811, 815
Sau96I	GGNCC	1 cut(s)	486
SchI	GAGTC	3 cut(s)	182, 310, 318
ScrFI	CCNGG	2 cut(s)	355, 508
SduI	GDGCHC	2 cut(s)	137, 242
SetI	ASST	4 cut(s)	20, 201, 242, 848
SfaNI	GCATC	5 cut(s)	90, 337, 422, 586, 718
SfuI	TTCGAA	1 cut(s)	276
SinI	GGWCC	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
Sse9I	AATT	6 cut(s)	57, 160, 232, 515, 547, 570
SsiI	CCGC	5 cut(s)	40, 186, 189, 212, 422
SstI	GAGCTC	1 cut(s)	242
StyD4I	CCNGG	2 cut(s)	353, 506
StyI	CCWWGG	1 cut(s)	715
TaaI	ACNGT	2 cut(s)	253, 381
TaqI	TCGA	4 cut(s)	120, 236, 276, 814
TasI	AATT	6 cut(s)	57, 160, 232, 515, 547, 570
TatI	WGTACW	1 cut(s)	441
TauI	GCSGC	2 cut(s)	189, 214
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	3 cut(s)	452, 573, 591
Tru9I	TTAA	3 cut(s)	452, 573, 591
TseI	GCWGC	3 cut(s)	461, 737, 782
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	3 cut(s)	37, 221, 408
Van91I	CCANNNNNTGG	1 cut(s)	708
Vha464I	CTTAAG	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	486
XapI	RAATTY	3 cut(s)	160, 232, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.