FvH4_7g00090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014783
Physical Location & Seq
Forward (+)
675439 .. 677786
2348 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00090.t1

Sequence Viewer

Length: 387 bp
ATGAAAATGGAGTCCGTATTTGCTCCAAGAGCAGGAGTAGGAGCATCCCGATTTCTCCGTCCCAGGGTCTCACCTCAGATTCCCATCGCTCTCAAACTGAGCCCCGCCACCGATCAAGCGCCGTTTGATTTCAGGTTCAAGAAGAGCGTTTTAAATTTGAAATTAAGGGAAAGATGGCAACCTGTGTCTGCATCAAAATCTAACCCTCGAGATGAAGAATCCATCGAAGATCAATCAGGCAGTGTTAAAAGTGGTGATGCTCCCCAAGGTCCTCCTTTCCTTACCATCTTGGCCGGATTTCTAGTCCTTTTTCTGGTATTCTGGATTATTGGATCAATTCTAATGTGGTTGGTTAGTTTCTTTGTTACGTCGCCTCCAGGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.16

Weight (kDa)

10.1

Isoelectric Point (pI)

60.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014783)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00090
malus_domestica MD02G1319200.v1.1 MD07G1001500.v1.1
prunus_persica Prupe.2G003000_v2.0.a1
pyrus_communis pycom02g26740
rosa_chinensis RchiOBHm_Chr1g0313281
rosa_laevigata RLG00000030809
rosa_multiflora Rmu_sc0000035.1_g000003 Rmu_sc0004761.1_g000010
rosa_roxburghii Rroxscaffold_4G00332280
rosa_rugosa RorugPtG0002600.1
rosa_samantha Rh1AG002400 Rh1CG004500 Rh1CG006900 Rh1CG007000 Rh1DG002300
rosa_wichuraiana Rw1G000150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 105
AclWI GGATC 1 cut(s) 340
AcoI YGGCCR 1 cut(s) 291
AcsI RAATTY 1 cut(s) 154
AfiI CCNNNNNNNGG 3 cut(s) 32, 64, 313
AgsI TTSAA 2 cut(s) 139, 160
AjnI CCWGG 2 cut(s) 62, 376
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 1 cut(s) 340
Ama87I CYCGRG 1 cut(s) 207
AoxI GGCC 1 cut(s) 291
ApoI RAATTY 1 cut(s) 154
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 2 cut(s) 63, 266
AvaI CYCGRG 1 cut(s) 207
AvaII GGWCC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 104
BccI CCATC 4 cut(s) 92, 168, 230, 293
BceAI ACGGC 1 cut(s) 106
BciT130I CCWGG 2 cut(s) 64, 378
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 2 cut(s) 302, 385
BfoI RGCGCY 1 cut(s) 122
Bme1390I CCNGG 2 cut(s) 64, 378
Bme18I GGWCC 1 cut(s) 269
BmeT110I CYCGRG 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 269
BmrFI CCNGG 2 cut(s) 64, 378
BmsI GCATC 3 cut(s) 53, 200, 247
BpmI CTGGAG 1 cut(s) 360
BsaBI GATNNNNATC 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 4 cut(s) 62, 63, 265, 377
BsaXI ACNNNNNCTCC 1 cut(s) 358
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 64, 313
Bse8I GATNNNNATC 1 cut(s) 83
BseBI CCWGG 2 cut(s) 64, 378
BseDI CCNNGG 4 cut(s) 62, 63, 265, 377
BseGI GGATG 1 cut(s) 44
BseJI GATNNNNATC 1 cut(s) 83
BseLI CCNNNNNNNGG 3 cut(s) 32, 64, 313
BseMII CTCAG 2 cut(s) 89, 89
BshFI GGCC 1 cut(s) 293
BsiHKCI CYCGRG 1 cut(s) 207
BsiSI CCGG 1 cut(s) 294
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 3 cut(s) 32, 64, 313
BsmAI GTCTC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 1 cut(s) 293
Bso31I GGTCTC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 3 cut(s) 112, 229, 332
BspACI CCGC 1 cut(s) 105
BspANI GGCC 1 cut(s) 293
BspCNI CTCAG 2 cut(s) 88, 90
BspPI GGATC 1 cut(s) 340
BspQI GCTCTTC 1 cut(s) 137
BspTNI GGTCTC 1 cut(s) 73
BssECI CCNNGG 4 cut(s) 62, 63, 265, 377
BssMI GATC 3 cut(s) 112, 229, 332
BssT1I CCWWGG 1 cut(s) 265
Bst2UI CCWGG 2 cut(s) 64, 378
Bst6I CTCTTC 1 cut(s) 137
BstDEI CTNAG 2 cut(s) 75, 98
BstF5I GGATG 1 cut(s) 44
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 3 cut(s) 115, 232, 335
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 3 cut(s) 112, 229, 332
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 2 cut(s) 64, 378
BstSCI CCNGG 2 cut(s) 62, 376
BsuRI GGCC 1 cut(s) 293
BtgZI GCGATG 1 cut(s) 70
BtsCI GGATG 1 cut(s) 44
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 247
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 269
CviJI RGCY 2 cut(s) 102, 293
CviKI_1 RGCY 2 cut(s) 102, 293
DdeI CTNAG 2 cut(s) 75, 98
DpnI GATC 3 cut(s) 114, 231, 334
DpnII GATC 3 cut(s) 112, 229, 332
DraI TTTAAA 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 291
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 104
Eco31I GGTCTC 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 269
Eco88I CYCGRG 1 cut(s) 207
EcoO109I RGGNCCY 1 cut(s) 269
EcoRII CCWGG 2 cut(s) 62, 376
EcoT14I CCWWGG 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 265
FaqI GGGAC 1 cut(s) 45
FauI CCCGC 1 cut(s) 112
FokI GGATG 1 cut(s) 31
FriOI GRGCYC 1 cut(s) 104
FspBI CTAG 2 cut(s) 302, 385
GlaI GCGC 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 360
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 1 cut(s) 293
HapII CCGG 1 cut(s) 294
HhaI GCGC 1 cut(s) 121
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HinfI GANTC 3 cut(s) 11, 79, 218
HpaII CCGG 1 cut(s) 294
HphI GGTGA 2 cut(s) 63, 266
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 4 cut(s) 48, 139, 209, 322
Hpy99I CGWCG 1 cut(s) 373
HpyCH4IV ACGT 1 cut(s) 368
HpyCH4V TGCA 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 2 cut(s) 75, 98
HpySE526I ACGT 1 cut(s) 368
HspAI GCGC 1 cut(s) 119
Kzo9I GATC 3 cut(s) 112, 229, 332
LguI GCTCTTC 1 cut(s) 137
LmnI GCTCC 3 cut(s) 28, 41, 265
LweI GCATC 3 cut(s) 53, 200, 247
MaeI CTAG 2 cut(s) 302, 385
MaeII ACGT 1 cut(s) 368
MaeIII GTNAC 1 cut(s) 364
MalI GATC 3 cut(s) 114, 231, 334
MboI GATC 3 cut(s) 112, 229, 332
MboII GAAGA 3 cut(s) 154, 227, 239
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 3 cut(s) 154, 161, 336
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 4 cut(s) 84, 216, 282, 384
MseI TTAA 3 cut(s) 152, 164, 246
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 2 cut(s) 64, 378
MvaI CCWGG 2 cut(s) 64, 378
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 3 cut(s) 112, 229, 332
PaeR7I CTCGAG 1 cut(s) 207
PasI CCCWGGG 1 cut(s) 63
PciSI GCTCTTC 1 cut(s) 137
PfeI GAWTC 2 cut(s) 79, 218
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PpuMI RGGWCCY 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 269
Psp6I CCWGG 2 cut(s) 62, 376
PspGI CCWGG 2 cut(s) 62, 376
PspPI GGNCC 1 cut(s) 269
PspPPI RGGWCCY 1 cut(s) 269
SapI GCTCTTC 1 cut(s) 137
SaqAI TTAA 3 cut(s) 152, 164, 246
Sau3AI GATC 3 cut(s) 112, 229, 332
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 2 cut(s) 64, 378
SduI GDGCHC 1 cut(s) 104
SetI ASST 5 cut(s) 76, 137, 184, 271, 371
SfaNI GCATC 3 cut(s) 53, 200, 247
Sfr274I CTCGAG 1 cut(s) 207
SinI GGWCC 1 cut(s) 269
SlaI CTCGAG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
Sse9I AATT 3 cut(s) 154, 161, 336
SsiI CCGC 1 cut(s) 105
SspMI CTAG 2 cut(s) 302, 385
StyD4I CCNGG 2 cut(s) 62, 376
StyI CCWWGG 1 cut(s) 265
TaiI ACGT 1 cut(s) 371
TaqI TCGA 2 cut(s) 208, 225
TasI AATT 3 cut(s) 154, 161, 336
TfiI GAWTC 2 cut(s) 79, 218
Tru1I TTAA 3 cut(s) 152, 164, 246
Tru9I TTAA 3 cut(s) 152, 164, 246
TscAI CASTG 1 cut(s) 247
TspDTI ATGAA 2 cut(s) 17, 228
TspGWI ACGGA 2 cut(s) 4, 47
TspRI CASTG 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 269
XapI RAATTY 1 cut(s) 154
XhoI CTCGAG 1 cut(s) 207
XspI CTAG 2 cut(s) 302, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.