MD07G1001500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0014783
Physical Location & Seq
Forward (+)
217420 .. 218238
819 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1001500.v1.1.491

Sequence Viewer

Length: 438 bp
ATGACGAACATGACATCCGTCGTGGCAGCAGGAGCGGGAGCAAGACCATCCCAATTGCATCTTCCTACTGCAAAACCTCAAATTCCGATCACTCACGCCTTCAAACTCAGTGCCGTTAAATCAGCGCCTGTCAATTTCAGGTTCAAGACGAGTGTTTTGAGATTGCAAATAAGGGAAAGATGGCATGCTGTGTCTGCATCAAAAAACGCAAACCCTCCTTTGTATGACTATGGAGATTCGATCAAAGATAAATCGGGCACGGTTGAAAAGGATGATGCTGCCCAAGGCGCTTCTCTGCTAACCATTTTGGATGGACTTCTAAGGCTTATCGTGTTTTTTGTCGTGTTTGTTTTTGCATCAGTTCTATCTTGGTGCATTGGTTTTTTTGTCACTATGCATTTTATAGCTTTGGCATTGTCCTCGGGTCCTCCTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.7

Weight (kDa)

9.93

Isoelectric Point (pI)

29.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014783)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00090
malus_domestica MD02G1319200.v1.1 MD07G1001500.v1.1
prunus_persica Prupe.2G003000_v2.0.a1
pyrus_communis pycom02g26740
rosa_chinensis RchiOBHm_Chr1g0313281
rosa_laevigata RLG00000030809
rosa_multiflora Rmu_sc0000035.1_g000003 Rmu_sc0004761.1_g000010
rosa_roxburghii Rroxscaffold_4G00332280
rosa_rugosa RorugPtG0002600.1
rosa_samantha Rh1AG002400 Rh1CG004500 Rh1CG006900 Rh1CG007000 Rh1DG002300
rosa_wichuraiana Rw1G000150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 35
AciI CCGC 1 cut(s) 35
AcsI RAATTY 1 cut(s) 81
AgsI TTSAA 3 cut(s) 103, 145, 266
AjuI GAANNNNNNNTTGG 2 cut(s) 45, 77
AloI GAACNNNNNNTCC 1 cut(s) 31
AluBI AGCT 1 cut(s) 407
AluI AGCT 1 cut(s) 407
AlwNI CAGNNNCTG 1 cut(s) 128
Ama87I CYCGRG 1 cut(s) 421
ApeKI GCWGC 2 cut(s) 26, 278
ApoI RAATTY 1 cut(s) 81
ArsI GACNNNNNNTTYG 2 cut(s) 139, 171
AspLEI GCGC 2 cut(s) 127, 290
AspS9I GGNCC 1 cut(s) 425
AvaI CYCGRG 1 cut(s) 421
AvaII GGWCC 1 cut(s) 425
BaeGI GKGCMC 1 cut(s) 260
BbvI GCAGC 2 cut(s) 38, 265
BccI CCATC 3 cut(s) 55, 174, 305
BceAI ACGGC 1 cut(s) 98
BcgI CGANNNNNNTGC 2 cut(s) 402, 436
BfoI RGCGCY 2 cut(s) 128, 291
BisI GCNGC 2 cut(s) 27, 279
BlsI GCNGC 2 cut(s) 28, 280
Bme18I GGWCC 1 cut(s) 425
BmeT110I CYCGRG 1 cut(s) 421
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 1 cut(s) 426
BmsI GCATC 4 cut(s) 67, 206, 265, 365
BoxI GACNNNNGTC 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 283, 420
BseDI CCNNGG 2 cut(s) 283, 420
BseGI GGATG 4 cut(s) 14, 47, 277, 316
BseMII CTCAG 1 cut(s) 121
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 2 cut(s) 38, 265
BsiHKCI CYCGRG 1 cut(s) 421
BsoBI CYCGRG 1 cut(s) 421
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 2 cut(s) 87, 240
BspACI CCGC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 426
BsrBI CCGCTC 1 cut(s) 35
BssECI CCNNGG 2 cut(s) 283, 420
BssMI GATC 2 cut(s) 87, 240
BssT1I CCWWGG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 262
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 2 cut(s) 107, 320
BstF5I GGATG 4 cut(s) 14, 47, 277, 316
BstH2I RGCGCY 2 cut(s) 128, 291
BstHHI GCGC 2 cut(s) 127, 290
BstKTI GATC 2 cut(s) 90, 243
BstMBI GATC 2 cut(s) 87, 240
BstMWI GCNNNNNNNGC 3 cut(s) 32, 194, 287
BstNSI RCATGY 1 cut(s) 188
BstPAI GACNNNNGTC 1 cut(s) 17
BstSLI GKGCMC 1 cut(s) 260
BstV1I GCAGC 2 cut(s) 38, 265
BtsCI GGATG 4 cut(s) 14, 47, 277, 316
BtsIMutI CAGTG 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 186
CaiI CAGNNNCTG 1 cut(s) 128
CfoI GCGC 2 cut(s) 127, 290
Cfr13I GGNCC 1 cut(s) 425
CviAII CATG 2 cut(s) 10, 185
CviJI RGCY 2 cut(s) 325, 407
CviKI_1 RGCY 2 cut(s) 325, 407
DdeI CTNAG 2 cut(s) 107, 320
DpnI GATC 2 cut(s) 89, 242
DpnII GATC 2 cut(s) 87, 240
Eco130I CCWWGG 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 425
Eco88I CYCGRG 1 cut(s) 421
EcoO109I RGGNCCY 1 cut(s) 425
EcoT14I CCWWGG 1 cut(s) 283
EcoT22I ATGCAT 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 2 cut(s) 13, 188
FaiI YATR 6 cut(s) 11, 186, 225, 231, 395, 404
FatI CATG 2 cut(s) 9, 184
FauI CCCGC 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 27, 279
FokI GGATG 3 cut(s) 34, 284, 323
Fsp4HI GCNGC 2 cut(s) 27, 279
GlaI GCGC 2 cut(s) 126, 289
GluI GCNGC 2 cut(s) 27, 279
HaeII RGCGCY 2 cut(s) 128, 291
HhaI GCGC 2 cut(s) 127, 290
Hin1II CATG 2 cut(s) 13, 188
Hin6I GCGC 2 cut(s) 125, 288
HinP1I GCGC 2 cut(s) 125, 288
HinfI GANTC 1 cut(s) 236
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4V TGCA 7 cut(s) 58, 71, 166, 197, 356, 375, 397
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 194, 287
HpyF3I CTNAG 2 cut(s) 107, 320
Hsp92II CATG 2 cut(s) 13, 188
HspAI GCGC 2 cut(s) 125, 288
Kzo9I GATC 2 cut(s) 87, 240
LmnI GCTCC 2 cut(s) 32, 38
LpnPI CCDG 3 cut(s) 15, 124, 141
Lsp1109I GCAGC 2 cut(s) 38, 265
LweI GCATC 4 cut(s) 67, 206, 265, 365
MaeIII GTNAC 1 cut(s) 388
MalI GATC 2 cut(s) 89, 242
MbiI CCGCTC 1 cut(s) 35
MboI GATC 2 cut(s) 87, 240
MboII GAAGA 1 cut(s) 53
MfeI CAATTG 1 cut(s) 53
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 3 cut(s) 53, 81, 133
MnlI CCTC 4 cut(s) 87, 225, 430, 438
Mph1103I ATGCAT 1 cut(s) 399
MseI TTAA 1 cut(s) 117
MunI CAATTG 1 cut(s) 53
MwoI GCNNNNNNNGC 3 cut(s) 32, 194, 287
NdeII GATC 2 cut(s) 87, 240
NlaIII CATG 2 cut(s) 13, 188
NlaIV GGNNCC 1 cut(s) 426
NmuCI GTSAC 1 cut(s) 388
NsiI ATGCAT 1 cut(s) 399
NspI RCATGY 1 cut(s) 188
PaeI GCATGC 1 cut(s) 188
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 2 cut(s) 28, 280
PpuMI RGGWCCY 1 cut(s) 425
PshAI GACNNNNGTC 1 cut(s) 17
Psp5II RGGWCCY 1 cut(s) 425
PspN4I GGNNCC 1 cut(s) 426
PspPI GGNCC 1 cut(s) 425
PspPPI RGGWCCY 1 cut(s) 425
PstNI CAGNNNCTG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 2 cut(s) 27, 279
Sau3AI GATC 2 cut(s) 87, 240
Sau96I GGNCC 1 cut(s) 425
SduI GDGCHC 1 cut(s) 260
SetI ASST 3 cut(s) 79, 143, 409
SfaNI GCATC 4 cut(s) 67, 206, 265, 365
SinI GGWCC 1 cut(s) 425
SphI GCATGC 1 cut(s) 188
Sse9I AATT 3 cut(s) 53, 81, 133
SsiI CCGC 1 cut(s) 35
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 1 cut(s) 262
TaqI TCGA 1 cut(s) 239
TasI AATT 3 cut(s) 53, 81, 133
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 2 cut(s) 26, 278
Tsp45I GTSAC 1 cut(s) 388
TspGWI ACGGA 1 cut(s) 7
TspRI CASTG 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 425
XapI RAATTY 1 cut(s) 81
XceI RCATGY 1 cut(s) 188
Zsp2I ATGCAT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.