MD02G1319200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0014783
Physical Location & Seq
Reverse (-)
37368933 .. 37370638
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1319200.v1.1.491

Sequence Viewer

Length: 414 bp
ATGGCAAGATCTGTGTTGTTGGGTGGAGGCGGAGCGCCACCATCCCATAATTCCGATTGCCGGCGGCTTCTGCTTCGTCCAATCGCGGTAGCACCTCAGACTTCCCTCAAACTCGGCGCCGTTAAAGCAGCAGCAGCACCACCGACTATCCATTGCAGGTTCAACAAGAATGTTTTGGGATTGCAAATAAAGGAAACGAGGCACGCTGTGTCTGCATCAAACTCCAACCCTCCAGATGGAGATTCGACCAAGGATAAATCAGGTGGGGTTGAAACTAATGATGCTGCTCCCCAGGGCCCTCCTCCGCTAACCATTTTGGCTGGATTTCTAGTCCTTATTCTCGTGTTTTGGGTTCTTGGATCGATCCTAATGTGGGTGATTAGTCTTCTTTTTAGGTTGCCTCCGTCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

14.38

Weight (kDa)

10.14

Isoelectric Point (pI)

52.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014783)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00090
malus_domestica MD02G1319200.v1.1 MD07G1001500.v1.1
prunus_persica Prupe.2G003000_v2.0.a1
pyrus_communis pycom02g26740
rosa_chinensis RchiOBHm_Chr1g0313281
rosa_laevigata RLG00000030809
rosa_multiflora Rmu_sc0000035.1_g000003 Rmu_sc0004761.1_g000010
rosa_roxburghii Rroxscaffold_4G00332280
rosa_rugosa RorugPtG0002600.1
rosa_samantha Rh1AG002400 Rh1CG004500 Rh1CG006900 Rh1CG007000 Rh1DG002300
rosa_wichuraiana Rw1G000150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 116
AccII CGCG 1 cut(s) 86
AciI CCGC 4 cut(s) 30, 64, 86, 305
AclWI GGATC 2 cut(s) 358, 367
AcyI GRCGYC 1 cut(s) 117
AdeI CACNNNGTG 1 cut(s) 208
AfiI CCNNNNNNNGG 3 cut(s) 60, 236, 373
AgsI TTSAA 2 cut(s) 163, 272
AjnI CCWGG 1 cut(s) 291
AlwI GGATC 2 cut(s) 358, 367
AoxI GGCC 1 cut(s) 295
ApaI GGGCCC 1 cut(s) 299
ApeKI GCWGC 4 cut(s) 128, 131, 134, 284
AspLEI GCGC 2 cut(s) 37, 119
AspS9I GGNCC 2 cut(s) 295, 296
AsuHPI GGTGA 1 cut(s) 388
BaeGI GKGCMC 1 cut(s) 299
BanI GGYRCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 299
BauI CACGAG 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 377
BbvI GCAGC 4 cut(s) 140, 143, 146, 271
BccI CCATC 2 cut(s) 49, 230
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 293
BfaI CTAG 1 cut(s) 329
BfoI RGCGCY 2 cut(s) 38, 120
BfuAI ACCTGC 1 cut(s) 147
BglII AGATCT 1 cut(s) 8
BisI GCNGC 5 cut(s) 65, 129, 132, 135, 285
BlsI GCNGC 5 cut(s) 66, 130, 133, 136, 286
Bme1390I CCNGG 1 cut(s) 293
BmgT120I GGNCC 2 cut(s) 295, 296
BmiI GGNNCC 2 cut(s) 118, 297
BmrFI CCNGG 1 cut(s) 293
BmsI GCATC 2 cut(s) 224, 271
BpiI GAAGAC 1 cut(s) 377
BpmI CTGGAG 1 cut(s) 216
Bsa29I ATCGAT 1 cut(s) 362
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 3 cut(s) 249, 291, 292
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 236, 373
Bse118I RCCGGY 1 cut(s) 60
Bse3DI GCAATG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 293
BseCI ATCGAT 1 cut(s) 362
BseDI CCNNGG 3 cut(s) 249, 291, 292
BseGI GGATG 1 cut(s) 41
BseLI CCNNNNNNNGG 3 cut(s) 60, 236, 373
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 291
BseSI GKGCMC 1 cut(s) 299
BseXI GCAGC 4 cut(s) 140, 143, 146, 271
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 116
BshVI ATCGAT 1 cut(s) 362
BsiSI CCGG 1 cut(s) 61
BslI CCNNNNNNNGG 3 cut(s) 60, 236, 373
BsnI GGCC 1 cut(s) 297
Bsp120I GGGCCC 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 299
Bsp143I GATC 3 cut(s) 8, 359, 363
BspACI CCGC 4 cut(s) 30, 64, 86, 305
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 1 cut(s) 109
BspDI ATCGAT 1 cut(s) 362
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 2 cut(s) 118, 297
BspMI ACCTGC 1 cut(s) 147
BspPI GGATC 2 cut(s) 358, 367
BspT107I GGYRCC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 60
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 3 cut(s) 249, 291, 292
BssMI GATC 3 cut(s) 8, 359, 363
BssNI GRCGYC 1 cut(s) 117
BssSI CACGAG 1 cut(s) 341
BssT1I CCWWGG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 341
Bst2UI CCWGG 1 cut(s) 293
BstACI GRCGYC 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 62, 204
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 41
BstFNI CGCG 1 cut(s) 86
BstH2I RGCGCY 2 cut(s) 38, 120
BstHHI GCGC 2 cut(s) 37, 119
BstKTI GATC 3 cut(s) 11, 362, 366
BstMBI GATC 3 cut(s) 8, 359, 363
BstMWI GCNNNNNNNGC 4 cut(s) 70, 125, 134, 212
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 291
BstSLI GKGCMC 1 cut(s) 299
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 4 cut(s) 140, 143, 146, 271
BstV2I GAAGAC 1 cut(s) 377
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
Bsu15I ATCGAT 1 cut(s) 362
BsuRI GGCC 1 cut(s) 297
BsuTUI ATCGAT 1 cut(s) 362
BtsCI GGATG 1 cut(s) 41
BveI ACCTGC 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 62, 204
CfoI GCGC 2 cut(s) 37, 119
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 2 cut(s) 295, 296
ClaI ATCGAT 1 cut(s) 362
CviJI RGCY 3 cut(s) 67, 297, 320
CviKI_1 RGCY 3 cut(s) 67, 297, 320
DdeI CTNAG 1 cut(s) 96
DinI GGCGCC 1 cut(s) 118
DpnI GATC 3 cut(s) 10, 361, 365
DpnII GATC 3 cut(s) 8, 359, 363
DraIII CACNNNGTG 1 cut(s) 208
EciI GGCGGA 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 299
EcoO109I RGGNCCY 2 cut(s) 295, 296
EcoRII CCWGG 1 cut(s) 291
EcoT14I CCWWGG 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 299
EgeI GGCGCC 1 cut(s) 118
EheI GGCGCC 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 249
FaiI YATR 1 cut(s) 48
Fnu4HI GCNGC 5 cut(s) 65, 129, 132, 135, 285
FokI GGATG 1 cut(s) 28
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 5 cut(s) 65, 129, 132, 135, 285
FspBI CTAG 1 cut(s) 329
GlaI GCGC 2 cut(s) 36, 118
GluI GCNGC 5 cut(s) 65, 129, 132, 135, 285
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 2 cut(s) 38, 120
HaeIII GGCC 1 cut(s) 297
HapII CCGG 1 cut(s) 61
HhaI GCGC 2 cut(s) 37, 119
Hin1I GRCGYC 1 cut(s) 117
Hin6I GCGC 2 cut(s) 35, 117
HinP1I GCGC 2 cut(s) 35, 117
HinfI GANTC 1 cut(s) 242
HpaII CCGG 1 cut(s) 61
HphI GGTGA 1 cut(s) 388
Hpy188I TCNGA 2 cut(s) 55, 99
Hpy188III TCNNGA 1 cut(s) 233
HpyCH4V TGCA 3 cut(s) 156, 184, 215
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 125, 134, 212
HpyF3I CTNAG 1 cut(s) 96
Hsp92I GRCGYC 1 cut(s) 117
HspAI GCGC 2 cut(s) 35, 117
KasI GGCGCC 1 cut(s) 116
KroI GCCGGC 1 cut(s) 60
KroNI GCCGGC 1 cut(s) 62
Kzo9I GATC 3 cut(s) 8, 359, 363
LmnI GCTCC 2 cut(s) 32, 292
LpnPI CCDG 7 cut(s) 74, 142, 246, 246, 278, 305, 306
Lsp1109I GCAGC 4 cut(s) 140, 143, 146, 271
LweI GCATC 2 cut(s) 224, 271
MaeI CTAG 1 cut(s) 329
MalI GATC 3 cut(s) 10, 361, 365
MboI GATC 3 cut(s) 8, 359, 363
MboII GAAGA 1 cut(s) 377
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 1 cut(s) 299
MluCI AATT 1 cut(s) 49
Mly113I GGCGCC 1 cut(s) 117
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 8 cut(s) 20, 105, 116, 192, 240, 309, 312, 411
MroNI GCCGGC 1 cut(s) 60
MseI TTAA 1 cut(s) 123
MspI CCGG 1 cut(s) 61
MspR9I CCNGG 1 cut(s) 293
MvaI CCWGG 1 cut(s) 293
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 4 cut(s) 70, 125, 134, 212
NaeI GCCGGC 1 cut(s) 62
NarI GGCGCC 1 cut(s) 117
NdeII GATC 3 cut(s) 8, 359, 363
NgoMIV GCCGGC 1 cut(s) 60
NlaIV GGNNCC 2 cut(s) 118, 297
NmeAIII GCCGAG 1 cut(s) 93
PasI CCCWGGG 1 cut(s) 292
PdiI GCCGGC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 5 cut(s) 66, 130, 133, 136, 286
PluTI GGCGCC 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 2 cut(s) 118, 297
PspOMI GGGCCC 1 cut(s) 295
PspPI GGNCC 2 cut(s) 295, 296
PsuI RGATCY 1 cut(s) 8
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 5 cut(s) 65, 129, 132, 135, 285
Sau3AI GATC 3 cut(s) 8, 359, 363
Sau96I GGNCC 2 cut(s) 295, 296
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 1 cut(s) 299
SetI ASST 4 cut(s) 97, 161, 265, 398
SfaNI GCATC 2 cut(s) 224, 271
SfoI GGCGCC 1 cut(s) 118
Sse9I AATT 1 cut(s) 49
SsiI CCGC 4 cut(s) 30, 64, 86, 305
SspDI GGCGCC 1 cut(s) 116
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 1 cut(s) 291
StyI CCWWGG 1 cut(s) 249
TaqI TCGA 2 cut(s) 245, 362
TasI AATT 1 cut(s) 49
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TseI GCWGC 4 cut(s) 128, 131, 134, 284
TspGWI ACGGA 1 cut(s) 393
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.