Rh1AG002400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0014783
Physical Location & Seq
Forward (+)
405840 .. 418650
12811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG002400.1

Sequence Viewer

Length: 798 bp
ATGGAAATGGAGTCCGTATTTGCTGCAGGAGCAGGAGCAGGAGCAGGAGCATCCCAATTGCTGCGTCCCAGGGTCACACCTCAGATTCCCATCGCTCTCAAACTGAGCGCCGCCGCCGATAAAGCGCCTTTTGGTTTCAGGTTCAAGAAGAACGTTTTAAATTTGCAAATAAGGGAAAGATGGCAAGCTGTGTCTGCATCAAAATCTAACCTTCCAGATGGGGATTCCATCGAAGATAAATCAGGCAGGGTTAAAAGTGGTGATGCTCCTCAAGGCCCCCCTTTCCTTACCATCTTGGCTGGATTTCTAGTCCTTTTACTGGTATTCTGGATTCTTGGATCCATTCTAACAGAGATTTACCGGTTCCCATCGAAACAAGGCCGCGTGGTGGGCCAGGTTCTAGCCGGCGCTGTCTCCGGCTACGAAGATCCGGATCTGTCACGCCACTGTCTGCTCTGGGTGCTCAGTTTACGGCTTAAACGACAAGGTCCCGTTCTCGGGATCCGACCGGACAGACCATCCGGCGAGCCTCTACGCAGCGAAAAAGCAATCGGAGTCGACTTCTTCTTCTTTTTATTTGCTGCTCAAGATGCCTCCACATCGTCGCTACTGTGGGCGGTGGTGTCGCTCGAGTCGCACCCGGAGATTCTTGCCAAGGTCCGGGAACTGATCACGGCGGACCAGCTAACGTGGATGAGGTACACGCACTCGGTGGTTCTTGAGGTCGTGAGGTACTGCGCTCCGGCCACCATGGTCCCTAACGTTGATGCTGTTGACTTTCCGTTTTCCGAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

28.96

Weight (kDa)

8.55

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014783)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00090
malus_domestica MD02G1319200.v1.1 MD07G1001500.v1.1
prunus_persica Prupe.2G003000_v2.0.a1
pyrus_communis pycom02g26740
rosa_chinensis RchiOBHm_Chr1g0313281
rosa_laevigata RLG00000030809
rosa_multiflora Rmu_sc0000035.1_g000003 Rmu_sc0004761.1_g000010
rosa_roxburghii Rroxscaffold_4G00332280
rosa_rugosa RorugPtG0002600.1
rosa_samantha Rh1AG002400 Rh1CG004500 Rh1CG006900 Rh1CG007000 Rh1DG002300
rosa_wichuraiana Rw1G000150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 558
AccII CGCG 1 cut(s) 384
AccIII TCCGGA 1 cut(s) 430
AciI CCGC 5 cut(s) 111, 114, 382, 617, 677
AclI AACGTT 2 cut(s) 153, 762
AclWI GGATC 6 cut(s) 333, 346, 422, 441, 496, 509
AcoI YGGCCR 1 cut(s) 744
AcsI RAATTY 1 cut(s) 160
AdeI CACNNNGTG 1 cut(s) 712
AfaI GTAC 2 cut(s) 701, 734
AfiI CCNNNNNNNGG 5 cut(s) 319, 388, 497, 498, 660
AgeI ACCGGT 1 cut(s) 360
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 2 cut(s) 68, 393
AluBI AGCT 2 cut(s) 188, 685
AluI AGCT 2 cut(s) 188, 685
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 1 cut(s) 418
AlwI GGATC 6 cut(s) 333, 346, 422, 441, 496, 509
Ama87I CYCGRG 2 cut(s) 497, 629
Aor13HI TCCGGA 1 cut(s) 430
AoxI GGCC 4 cut(s) 274, 379, 391, 744
ApeKI GCWGC 4 cut(s) 23, 61, 537, 581
ApoI RAATTY 1 cut(s) 160
AsiGI ACCGGT 1 cut(s) 360
AspLEI GCGC 4 cut(s) 110, 127, 410, 740
AspS9I GGNCC 6 cut(s) 275, 391, 488, 658, 679, 754
AsuC2I CCSGG 2 cut(s) 641, 662
AsuHPI GGTGA 1 cut(s) 272
AvaI CYCGRG 2 cut(s) 497, 629
AvaII GGWCC 4 cut(s) 488, 658, 679, 754
BamHI GGATCC 2 cut(s) 338, 501
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 4 cut(s) 10, 48, 549, 568
BccI CCATC 7 cut(s) 98, 174, 212, 236, 299, 376, 526
BceAI ACGGC 2 cut(s) 488, 690
BciT130I CCWGG 2 cut(s) 70, 395
BclI TGATCA 1 cut(s) 669
BcnI CCSGG 2 cut(s) 641, 662
BcoDI GTCTC 1 cut(s) 418
BfaI CTAG 2 cut(s) 308, 401
BfmI CTRYAG 1 cut(s) 24
BfoI RGCGCY 3 cut(s) 111, 128, 411
BisI GCNGC 7 cut(s) 24, 62, 111, 114, 382, 538, 582
BlsI GCNGC 7 cut(s) 25, 63, 112, 115, 383, 539, 583
Bme1390I CCNGG 4 cut(s) 70, 395, 641, 662
Bme18I GGWCC 4 cut(s) 488, 658, 679, 754
BmeT110I CYCGRG 2 cut(s) 497, 629
BmgT120I GGNCC 6 cut(s) 275, 391, 488, 658, 679, 754
BmiI GGNNCC 6 cut(s) 277, 340, 365, 490, 503, 756
BmrFI CCNGG 4 cut(s) 70, 395, 641, 662
BmsI GCATC 5 cut(s) 59, 206, 253, 580, 757
BpuEI CTTGAG 3 cut(s) 255, 570, 740
BpuMI CCSGG 2 cut(s) 641, 662
BsaBI GATNNNNATC 2 cut(s) 89, 432
BsaJI CCNNGG 4 cut(s) 68, 69, 654, 750
BsaWI WCCGGW 3 cut(s) 360, 430, 508
Bsc4I CCNNNNNNNGG 5 cut(s) 319, 388, 497, 498, 660
Bse118I RCCGGY 2 cut(s) 360, 404
Bse1I ACTGG 1 cut(s) 324
Bse8I GATNNNNATC 2 cut(s) 89, 432
BseAI TCCGGA 1 cut(s) 430
BseBI CCWGG 2 cut(s) 70, 395
BseDI CCNNGG 4 cut(s) 68, 69, 654, 750
BseGI GGATG 3 cut(s) 50, 518, 699
BseJI GATNNNNATC 2 cut(s) 89, 432
BseLI CCNNNNNNNGG 5 cut(s) 319, 388, 497, 498, 660
BseMII CTCAG 3 cut(s) 95, 95, 478
BseNI ACTGG 1 cut(s) 324
BseRI GAGGAG 1 cut(s) 258
BseXI GCAGC 4 cut(s) 10, 48, 549, 568
Bsh1236I CGCG 1 cut(s) 384
Bsh1285I CGRYCG 1 cut(s) 509
BshFI GGCC 4 cut(s) 276, 381, 393, 746
BshTI ACCGGT 1 cut(s) 360
BsiEI CGRYCG 1 cut(s) 509
BsiHKAI GWGCWC 1 cut(s) 465
BsiHKCI CYCGRG 2 cut(s) 497, 629
BsiSI CCGG 9 cut(s) 361, 405, 417, 431, 509, 522, 641, 661, 743
BslFI GGGAC 3 cut(s) 51, 474, 740
BslI CCNNNNNNNGG 5 cut(s) 319, 388, 497, 498, 660
BsmAI GTCTC 1 cut(s) 418
BsmFI GGGAC 3 cut(s) 51, 474, 740
BsnI GGCC 4 cut(s) 276, 381, 393, 746
BsoBI CYCGRG 2 cut(s) 497, 629
Bsp1286I GDGCHC 1 cut(s) 465
Bsp13I TCCGGA 1 cut(s) 430
Bsp143I GATC 5 cut(s) 338, 427, 433, 501, 669
Bsp19I CCATGG 1 cut(s) 750
BspACI CCGC 5 cut(s) 111, 114, 382, 617, 677
BspANI GGCC 4 cut(s) 276, 381, 393, 746
BspCNI CTCAG 3 cut(s) 94, 96, 477
BspEI TCCGGA 1 cut(s) 430
BspFNI CGCG 1 cut(s) 384
BspLI GGNNCC 6 cut(s) 277, 340, 365, 490, 503, 756
BspMAI CTGCAG 1 cut(s) 28
BspPI GGATC 6 cut(s) 333, 346, 422, 441, 496, 509
BsrFI RCCGGY 2 cut(s) 360, 404
BsrI ACTGG 1 cut(s) 324
BssAI RCCGGY 2 cut(s) 360, 404
BssECI CCNNGG 4 cut(s) 68, 69, 654, 750
BssMI GATC 5 cut(s) 338, 427, 433, 501, 669
BssT1I CCWWGG 2 cut(s) 654, 750
Bst2UI CCWGG 2 cut(s) 70, 395
Bst4CI ACNGT 2 cut(s) 449, 612
BstC8I GCNNGC 3 cut(s) 186, 406, 527
BstDEI CTNAG 3 cut(s) 81, 104, 464
BstDSI CCRYGG 1 cut(s) 750
BstF5I GGATG 3 cut(s) 50, 518, 699
BstFNI CGCG 1 cut(s) 384
BstH2I RGCGCY 3 cut(s) 111, 128, 411
BstHHI GCGC 4 cut(s) 110, 127, 410, 740
BstKTI GATC 5 cut(s) 341, 430, 436, 504, 672
BstMAI GTCTC 1 cut(s) 418
BstMBI GATC 5 cut(s) 338, 427, 433, 501, 669
BstMCI CGRYCG 1 cut(s) 509
BstMWI GCNNNNNNNGC 7 cut(s) 29, 122, 194, 390, 460, 590, 634
BstNI CCWGG 2 cut(s) 70, 395
BstSCI CCNGG 4 cut(s) 68, 393, 639, 660
BstSFI CTRYAG 1 cut(s) 24
BstUI CGCG 1 cut(s) 384
BstV1I GCAGC 4 cut(s) 10, 48, 549, 568
BstX2I RGATCY 4 cut(s) 338, 427, 433, 501
BstYI RGATCY 4 cut(s) 338, 427, 433, 501
BsuRI GGCC 4 cut(s) 276, 381, 393, 746
BtgI CCRYGG 1 cut(s) 750
BtgZI GCGATG 1 cut(s) 76
BtsCI GGATG 3 cut(s) 50, 518, 699
BtsIMutI CAGTG 1 cut(s) 445
Cac8I GCNNGC 3 cut(s) 186, 406, 527
CfoI GCGC 4 cut(s) 110, 127, 410, 740
Cfr10I RCCGGY 2 cut(s) 360, 404
Cfr13I GGNCC 6 cut(s) 275, 391, 488, 658, 679, 754
CseI GACGC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 700, 733
CspAI ACCGGT 1 cut(s) 360
CviAII CATG 1 cut(s) 751
CviQI GTAC 2 cut(s) 700, 733
DdeI CTNAG 3 cut(s) 81, 104, 464
DpnI GATC 5 cut(s) 340, 429, 435, 503, 671
DpnII GATC 5 cut(s) 338, 427, 433, 501, 669
DraI TTTAAA 1 cut(s) 159
DraIII CACNNNGTG 1 cut(s) 712
EaeI YGGCCR 1 cut(s) 744
EciI GGCGGA 1 cut(s) 692
Eco130I CCWWGG 2 cut(s) 654, 750
Eco47I GGWCC 4 cut(s) 488, 658, 679, 754
Eco88I CYCGRG 2 cut(s) 497, 629
EcoO109I RGGNCCY 2 cut(s) 275, 488
EcoRII CCWGG 2 cut(s) 68, 393
EcoT14I CCWWGG 2 cut(s) 654, 750
ErhI CCWWGG 2 cut(s) 654, 750
FaeI CATG 1 cut(s) 754
FaiI YATR 1 cut(s) 752
FaqI GGGAC 3 cut(s) 51, 474, 740
FatI CATG 1 cut(s) 750
FbaI TGATCA 1 cut(s) 669
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 7 cut(s) 24, 62, 111, 114, 382, 538, 582
FokI GGATG 3 cut(s) 37, 505, 706
Fsp4HI GCNGC 7 cut(s) 24, 62, 111, 114, 382, 538, 582
FspBI CTAG 2 cut(s) 308, 401
GlaI GCGC 4 cut(s) 109, 126, 409, 739
GluI GCNGC 7 cut(s) 24, 62, 111, 114, 382, 538, 582
HaeII RGCGCY 3 cut(s) 111, 128, 411
HaeIII GGCC 4 cut(s) 276, 381, 393, 746
HapII CCGG 9 cut(s) 361, 405, 417, 431, 509, 522, 641, 661, 743
HgaI GACGC 1 cut(s) 53
HhaI GCGC 4 cut(s) 110, 127, 410, 740
Hin1II CATG 1 cut(s) 754
Hin6I GCGC 4 cut(s) 108, 125, 408, 738
HinP1I GCGC 4 cut(s) 108, 125, 408, 738
HincII GTYRAC 2 cut(s) 559, 775
HindII GTYRAC 2 cut(s) 559, 775
HinfI GANTC 7 cut(s) 11, 85, 224, 331, 555, 632, 646
HpaII CCGG 9 cut(s) 361, 405, 417, 431, 509, 522, 641, 661, 743
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 4 cut(s) 470, 559, 702, 775
Hpy188I TCNGA 4 cut(s) 84, 506, 554, 790
Hpy188III TCNNGA 8 cut(s) 145, 215, 328, 431, 499, 587, 719, 727
Hpy8I GTNNAC 4 cut(s) 470, 559, 702, 775
Hpy99I CGWCG 1 cut(s) 607
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 2 cut(s) 449, 612
HpyCH4IV ACGT 3 cut(s) 153, 689, 762
HpyCH4V TGCA 3 cut(s) 26, 166, 197
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 122, 194, 390, 460, 590, 634
HpyF3I CTNAG 3 cut(s) 81, 104, 464
HpySE526I ACGT 3 cut(s) 153, 689, 762
Hsp92II CATG 1 cut(s) 754
HspAI GCGC 4 cut(s) 108, 125, 408, 738
Kpn2I TCCGGA 1 cut(s) 430
KroI GCCGGC 1 cut(s) 404
KroNI GCCGGC 1 cut(s) 406
Ksp22I TGATCA 1 cut(s) 669
Kzo9I GATC 5 cut(s) 338, 427, 433, 501, 669
LmnI GCTCC 6 cut(s) 29, 35, 41, 47, 271, 745
Lsp1109I GCAGC 4 cut(s) 10, 48, 549, 568
LweI GCATC 5 cut(s) 59, 206, 253, 580, 757
MaeI CTAG 2 cut(s) 308, 401
MaeII ACGT 3 cut(s) 153, 689, 762
MaeIII GTNAC 2 cut(s) 73, 438
MalI GATC 5 cut(s) 340, 429, 435, 503, 671
MboI GATC 5 cut(s) 338, 427, 433, 501, 669
MboII GAAGA 5 cut(s) 160, 245, 437, 556, 559
MfeI CAATTG 1 cut(s) 56
MflI RGATCY 4 cut(s) 338, 427, 433, 501
MhlI GDGCHC 1 cut(s) 465
MluCI AATT 2 cut(s) 56, 160
MlyI GAGTC 3 cut(s) 20, 564, 641
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 7 cut(s) 90, 279, 540, 604, 690, 715, 723
MroI TCCGGA 1 cut(s) 430
MroNI GCCGGC 1 cut(s) 404
MseI TTAA 3 cut(s) 158, 252, 477
MspI CCGG 9 cut(s) 361, 405, 417, 431, 509, 522, 641, 661, 743
MspR9I CCNGG 4 cut(s) 70, 395, 641, 662
MunI CAATTG 1 cut(s) 56
MvaI CCWGG 2 cut(s) 70, 395
MvnI CGCG 1 cut(s) 384
MwoI GCNNNNNNNGC 7 cut(s) 29, 122, 194, 390, 460, 590, 634
NaeI GCCGGC 1 cut(s) 406
NciI CCSGG 2 cut(s) 641, 662
NcoI CCATGG 1 cut(s) 750
NdeII GATC 5 cut(s) 338, 427, 433, 501, 669
NgoMIV GCCGGC 1 cut(s) 404
NlaIII CATG 1 cut(s) 754
NlaIV GGNNCC 6 cut(s) 277, 340, 365, 490, 503, 756
NmuCI GTSAC 2 cut(s) 73, 438
PaeR7I CTCGAG 1 cut(s) 629
PasI CCCWGGG 1 cut(s) 69
PcsI WCGNNNNNNNCGW 1 cut(s) 478
PdiI GCCGGC 1 cut(s) 406
PfeI GAWTC 4 cut(s) 85, 224, 331, 646
PflFI GACNNNGTC 1 cut(s) 486
PfoI TCCNGGA 1 cut(s) 660
PinAI ACCGGT 1 cut(s) 360
PkrI GCNGC 7 cut(s) 25, 63, 112, 115, 383, 539, 583
PleI GAGTC 3 cut(s) 19, 563, 640
PpsI GAGTC 3 cut(s) 19, 563, 640
PpuMI RGGWCCY 1 cut(s) 488
Psp1406I AACGTT 2 cut(s) 153, 762
Psp5II RGGWCCY 1 cut(s) 488
Psp6I CCWGG 2 cut(s) 68, 393
PspGI CCWGG 2 cut(s) 68, 393
PspN4I GGNNCC 6 cut(s) 277, 340, 365, 490, 503, 756
PspPI GGNCC 6 cut(s) 275, 391, 488, 658, 679, 754
PspPPI RGGWCCY 1 cut(s) 488
PspXI VCTCGAGB 1 cut(s) 629
PstI CTGCAG 1 cut(s) 28
PsuI RGATCY 4 cut(s) 338, 427, 433, 501
PsyI GACNNNGTC 1 cut(s) 486
RsaI GTAC 2 cut(s) 701, 734
RsaNI GTAC 2 cut(s) 700, 733
SalI GTCGAC 1 cut(s) 557
SaqAI TTAA 3 cut(s) 158, 252, 477
SatI GCNGC 7 cut(s) 24, 62, 111, 114, 382, 538, 582
Sau3AI GATC 5 cut(s) 338, 427, 433, 501, 669
Sau96I GGNCC 6 cut(s) 275, 391, 488, 658, 679, 754
SchI GAGTC 3 cut(s) 20, 564, 641
ScrFI CCNGG 4 cut(s) 70, 395, 641, 662
SduI GDGCHC 1 cut(s) 465
SfaNI GCATC 5 cut(s) 59, 206, 253, 580, 757
SfcI CTRYAG 1 cut(s) 24
Sfr274I CTCGAG 1 cut(s) 629
SinI GGWCC 4 cut(s) 488, 658, 679, 754
SlaI CTCGAG 1 cut(s) 629
SmlI CTYRAG 4 cut(s) 270, 585, 629, 719
SmoI CTYRAG 4 cut(s) 270, 585, 629, 719
Sse9I AATT 2 cut(s) 56, 160
SsiI CCGC 5 cut(s) 111, 114, 382, 617, 677
SspMI CTAG 2 cut(s) 308, 401
StyD4I CCNGG 4 cut(s) 68, 393, 639, 660
StyI CCWWGG 2 cut(s) 654, 750
TaaI ACNGT 2 cut(s) 449, 612
TaiI ACGT 3 cut(s) 156, 692, 765
TaqI TCGA 4 cut(s) 231, 371, 558, 630
TasI AATT 2 cut(s) 56, 160
TauI GCSGC 3 cut(s) 113, 116, 384
TfiI GAWTC 4 cut(s) 85, 224, 331, 646
Tru1I TTAA 3 cut(s) 158, 252, 477
Tru9I TTAA 3 cut(s) 158, 252, 477
TscAI CASTG 1 cut(s) 452
TseFI GTSAC 2 cut(s) 73, 438
TseI GCWGC 4 cut(s) 23, 61, 537, 581
Tsp45I GTSAC 2 cut(s) 73, 438
TspGWI ACGGA 2 cut(s) 4, 771
TspRI CASTG 1 cut(s) 452
Tth111I GACNNNGTC 1 cut(s) 486
VpaK11BI GGWCC 4 cut(s) 488, 658, 679, 754
XapI RAATTY 1 cut(s) 160
XhoI CTCGAG 1 cut(s) 629
XmiI GTMKAC 1 cut(s) 558
XspI CTAG 2 cut(s) 308, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.