pycom02g26740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0014783
Physical Location & Seq
Reverse (-)
24549517 .. 24551649
2133 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g26740.1

Sequence Viewer

Length: 414 bp
ATGGCAAGATCTGTGTTGTTGGGTGGAGGCGGAGCGCGACCATCCCATGATTCTGATTGCCGGCGGCTTCTGCTTCGTCCAAGCGCGGTAGCACCTCAGACTTCCCTCAAACTCAGCGCCGTTAAAGCACCAGCAGCACCACCGACTATCCATTTCAGGTTCAACAAGAATGTTTTGGGATTGCAAATAAAGGAAACAAGGCACGCTGTGTCTGCATCAAACTCCAACCCTCCAGATGGAGATTCGACCAAAGATAAATCAGGTGGGGTTGAAACGAATGATCCTGCTCCCCAGGGCCCTCCTCTGCTAACCATTTTGGCTGGATTTCTAGTCCTTTTTCTCGTGTTTTGGGTTCTTGGATCGATCCTAATGTGGGTGATTAGTCTTCTTTTTAGGTTGCCTCCGTCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

14.59

Weight (kDa)

10.36

Isoelectric Point (pI)

53.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014783)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00090
malus_domestica MD02G1319200.v1.1 MD07G1001500.v1.1
prunus_persica Prupe.2G003000_v2.0.a1
pyrus_communis pycom02g26740
rosa_chinensis RchiOBHm_Chr1g0313281
rosa_laevigata RLG00000030809
rosa_multiflora Rmu_sc0000035.1_g000003 Rmu_sc0004761.1_g000010
rosa_roxburghii Rroxscaffold_4G00332280
rosa_rugosa RorugPtG0002600.1
rosa_samantha Rh1AG002400 Rh1CG004500 Rh1CG006900 Rh1CG007000 Rh1DG002300
rosa_wichuraiana Rw1G000150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 37, 86
AciI CCGC 3 cut(s) 30, 64, 86
AclWI GGATC 3 cut(s) 275, 358, 367
AdeI CACNNNGTG 1 cut(s) 208
AfiI CCNNNNNNNGG 2 cut(s) 236, 373
AgsI TTSAA 2 cut(s) 163, 272
AjnI CCWGG 1 cut(s) 291
AlwI GGATC 3 cut(s) 275, 358, 367
AoxI GGCC 1 cut(s) 295
ApaI GGGCCC 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 134
AspLEI GCGC 3 cut(s) 37, 86, 119
AspS9I GGNCC 2 cut(s) 295, 296
AsuHPI GGTGA 1 cut(s) 388
BaeGI GKGCMC 1 cut(s) 299
BanII GRGCYC 1 cut(s) 299
BauI CACGAG 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 377
BbvI GCAGC 1 cut(s) 146
BccI CCATC 2 cut(s) 49, 230
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 293
BfaI CTAG 1 cut(s) 329
BfoI RGCGCY 1 cut(s) 120
BglII AGATCT 1 cut(s) 8
BisI GCNGC 2 cut(s) 65, 135
BlsI GCNGC 2 cut(s) 66, 136
Bme1390I CCNGG 1 cut(s) 293
BmgT120I GGNCC 2 cut(s) 295, 296
BmiI GGNNCC 1 cut(s) 297
BmrFI CCNGG 1 cut(s) 293
BmsI GCATC 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 377
BpmI CTGGAG 1 cut(s) 216
Bsa29I ATCGAT 1 cut(s) 362
BsaJI CCNNGG 2 cut(s) 291, 292
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 373
Bse118I RCCGGY 1 cut(s) 60
BseBI CCWGG 1 cut(s) 293
BseCI ATCGAT 1 cut(s) 362
BseDI CCNNGG 2 cut(s) 291, 292
BseGI GGATG 1 cut(s) 41
BseLI CCNNNNNNNGG 2 cut(s) 236, 373
BseMII CTCAG 2 cut(s) 110, 127
BseRI GAGGAG 1 cut(s) 291
BseSI GKGCMC 1 cut(s) 299
BseXI GCAGC 1 cut(s) 146
Bsh1236I CGCG 2 cut(s) 37, 86
BshFI GGCC 1 cut(s) 297
BshVI ATCGAT 1 cut(s) 362
BsiSI CCGG 1 cut(s) 61
BslI CCNNNNNNNGG 2 cut(s) 236, 373
BsnI GGCC 1 cut(s) 297
Bsp120I GGGCCC 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 299
Bsp143I GATC 4 cut(s) 8, 280, 359, 363
BspACI CCGC 3 cut(s) 30, 64, 86
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 2 cut(s) 109, 126
BspDI ATCGAT 1 cut(s) 362
BspFNI CGCG 2 cut(s) 37, 86
BspLI GGNNCC 1 cut(s) 297
BspPI GGATC 3 cut(s) 275, 358, 367
BsrFI RCCGGY 1 cut(s) 60
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 2 cut(s) 291, 292
BssMI GATC 4 cut(s) 8, 280, 359, 363
BssSI CACGAG 1 cut(s) 341
Bst2BI CACGAG 1 cut(s) 341
Bst2UI CCWGG 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 62, 204
BstDEI CTNAG 2 cut(s) 96, 113
BstF5I GGATG 1 cut(s) 41
BstFNI CGCG 2 cut(s) 37, 86
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 3 cut(s) 37, 86, 119
BstKTI GATC 4 cut(s) 11, 283, 362, 366
BstMBI GATC 4 cut(s) 8, 280, 359, 363
BstMWI GCNNNNNNNGC 4 cut(s) 70, 125, 134, 212
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 291
BstSLI GKGCMC 1 cut(s) 299
BstUI CGCG 2 cut(s) 37, 86
BstV1I GCAGC 1 cut(s) 146
BstV2I GAAGAC 1 cut(s) 377
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
Bsu15I ATCGAT 1 cut(s) 362
BsuRI GGCC 1 cut(s) 297
BsuTUI ATCGAT 1 cut(s) 362
BtsCI GGATG 1 cut(s) 41
Cac8I GCNNGC 2 cut(s) 62, 204
CfoI GCGC 3 cut(s) 37, 86, 119
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 2 cut(s) 295, 296
ClaI ATCGAT 1 cut(s) 362
CviAII CATG 1 cut(s) 47
CviJI RGCY 3 cut(s) 67, 297, 320
CviKI_1 RGCY 3 cut(s) 67, 297, 320
DdeI CTNAG 2 cut(s) 96, 113
DpnI GATC 4 cut(s) 10, 282, 361, 365
DpnII GATC 4 cut(s) 8, 280, 359, 363
DraIII CACNNNGTG 1 cut(s) 208
EciI GGCGGA 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 299
EcoO109I RGGNCCY 2 cut(s) 295, 296
EcoRII CCWGG 1 cut(s) 291
EcoT38I GRGCYC 1 cut(s) 299
FaeI CATG 1 cut(s) 50
FaiI YATR 1 cut(s) 48
FatI CATG 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 65, 135
FokI GGATG 1 cut(s) 28
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 2 cut(s) 65, 135
FspBI CTAG 1 cut(s) 329
GlaI GCGC 3 cut(s) 36, 85, 118
GluI GCNGC 2 cut(s) 65, 135
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 1 cut(s) 297
HapII CCGG 1 cut(s) 61
HhaI GCGC 3 cut(s) 37, 86, 119
Hin1II CATG 1 cut(s) 50
Hin6I GCGC 3 cut(s) 35, 84, 117
HinP1I GCGC 3 cut(s) 35, 84, 117
HinfI GANTC 2 cut(s) 50, 242
HpaII CCGG 1 cut(s) 61
HphI GGTGA 1 cut(s) 388
Hpy188I TCNGA 2 cut(s) 55, 99
Hpy188III TCNNGA 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 184, 215
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 125, 134, 212
HpyF3I CTNAG 2 cut(s) 96, 113
Hsp92II CATG 1 cut(s) 50
HspAI GCGC 3 cut(s) 35, 84, 117
KroI GCCGGC 1 cut(s) 60
KroNI GCCGGC 1 cut(s) 62
Kzo9I GATC 4 cut(s) 8, 280, 359, 363
LmnI GCTCC 2 cut(s) 32, 292
LpnPI CCDG 9 cut(s) 74, 142, 144, 246, 246, 278, 297, 305, 306
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 1 cut(s) 224
MaeI CTAG 1 cut(s) 329
MalI GATC 4 cut(s) 10, 282, 361, 365
MboI GATC 4 cut(s) 8, 280, 359, 363
MboII GAAGA 1 cut(s) 377
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 7 cut(s) 20, 105, 116, 240, 309, 312, 411
MroNI GCCGGC 1 cut(s) 60
MseI TTAA 1 cut(s) 123
MspI CCGG 1 cut(s) 61
MspR9I CCNGG 1 cut(s) 293
MvaI CCWGG 1 cut(s) 293
MvnI CGCG 2 cut(s) 37, 86
MwoI GCNNNNNNNGC 4 cut(s) 70, 125, 134, 212
NaeI GCCGGC 1 cut(s) 62
NdeII GATC 4 cut(s) 8, 280, 359, 363
NgoMIV GCCGGC 1 cut(s) 60
NlaIII CATG 1 cut(s) 50
NlaIV GGNNCC 1 cut(s) 297
PasI CCCWGGG 1 cut(s) 292
PdiI GCCGGC 1 cut(s) 62
PfeI GAWTC 2 cut(s) 50, 242
PkrI GCNGC 2 cut(s) 66, 136
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 297
PspOMI GGGCCC 1 cut(s) 295
PspPI GGNCC 2 cut(s) 295, 296
PsuI RGATCY 1 cut(s) 8
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 2 cut(s) 65, 135
Sau3AI GATC 4 cut(s) 8, 280, 359, 363
Sau96I GGNCC 2 cut(s) 295, 296
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 1 cut(s) 299
SetI ASST 4 cut(s) 97, 161, 265, 398
SfaNI GCATC 1 cut(s) 224
SsiI CCGC 3 cut(s) 30, 64, 86
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 1 cut(s) 291
TaqI TCGA 2 cut(s) 245, 362
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 2 cut(s) 50, 242
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TseI GCWGC 1 cut(s) 134
TspGWI ACGGA 1 cut(s) 393
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.