Rroxscaffold_4G00332280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0014783
Physical Location & Seq
Reverse (-)
66398122 .. 66400632
2511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00332280.1

Sequence Viewer

Length: 369 bp
ATGGAGTCCGTATTTGCTGCAGGAGCAGGAGCTGGAGCATCCCAATTGCTCCGTCCCAGGATCGCACCTCAGATTCCCATCGCTCTCAAACTGAGCGCCGGCACCGATAAAGCGCCATTTGATTTCAGGTTCAAGAAGAACGTTTTAAATTTGCAAATAAGGAAAAGATGGCAAGCTGTCTCTGCATCAAAATCTAACCTTCCAGATGGGGACTCCATTGAAGATAAATCAGGCAGGTTTAAAAGTGGCGATGCTCCCCAAGGCCCTCCTTTCCTTACCATCTTGGCTGGATTTCTGGTCCTTGTACTGGTATTTTGGATTCTTGGATCAATTCTAATGTGGTTGATTAGTTTCTTTATTCGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.33

Weight (kDa)

10.43

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014783)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00090
malus_domestica MD02G1319200.v1.1 MD07G1001500.v1.1
prunus_persica Prupe.2G003000_v2.0.a1
pyrus_communis pycom02g26740
rosa_chinensis RchiOBHm_Chr1g0313281
rosa_laevigata RLG00000030809
rosa_multiflora Rmu_sc0000035.1_g000003 Rmu_sc0004761.1_g000010
rosa_roxburghii Rroxscaffold_4G00332280
rosa_rugosa RorugPtG0002600.1
rosa_samantha Rh1AG002400 Rh1CG004500 Rh1CG006900 Rh1CG007000 Rh1DG002300
rosa_wichuraiana Rw1G000150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 225
AccB1I GGYRCC 1 cut(s) 101
AclI AACGTT 1 cut(s) 141
AclWI GGATC 2 cut(s) 68, 334
AcsI RAATTY 1 cut(s) 148
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 2 cut(s) 133, 221
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 2 cut(s) 32, 176
AluI AGCT 2 cut(s) 32, 176
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 2 cut(s) 68, 334
AlwNI CAGNNNCTG 1 cut(s) 32
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 148
AspLEI GCGC 2 cut(s) 98, 115
AspS9I GGNCC 2 cut(s) 263, 298
AvaII GGWCC 1 cut(s) 298
BanI GGYRCC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 4
BccI CCATC 4 cut(s) 86, 162, 200, 287
BciT130I CCWGG 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 184
BfaI CTAG 1 cut(s) 367
BfmI CTRYAG 1 cut(s) 18
BfoI RGCGCY 2 cut(s) 99, 116
BfuAI ACCTGC 1 cut(s) 225
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 298
BmgT120I GGNCC 2 cut(s) 263, 298
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 3 cut(s) 47, 194, 241
BpmI CTGGAG 1 cut(s) 54
BsaBI GATNNNNATC 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 56, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 312
Bse8I GATNNNNATC 1 cut(s) 77
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 2 cut(s) 56, 259
BseGI GGATG 1 cut(s) 38
BseJI GATNNNNATC 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 2 cut(s) 83, 83
BseNI ACTGG 1 cut(s) 312
BseXI GCAGC 1 cut(s) 4
BshFI GGCC 1 cut(s) 264
BshNI GGYRCC 1 cut(s) 101
BsiSI CCGG 1 cut(s) 99
BslFI GGGAC 2 cut(s) 39, 224
BslI CCNNNNNNNGG 1 cut(s) 307
BsmAI GTCTC 1 cut(s) 184
BsmFI GGGAC 2 cut(s) 39, 224
BsnI GGCC 1 cut(s) 264
Bsp143I GATC 2 cut(s) 60, 326
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 2 cut(s) 82, 84
BspLI GGNNCC 1 cut(s) 103
BspMAI CTGCAG 1 cut(s) 22
BspMI ACCTGC 1 cut(s) 225
BspPI GGATC 2 cut(s) 68, 334
BspT107I GGYRCC 1 cut(s) 101
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 1 cut(s) 312
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 56, 259
BssMI GATC 2 cut(s) 60, 326
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 58
BstC8I GCNNGC 2 cut(s) 100, 174
BstDEI CTNAG 2 cut(s) 69, 92
BstF5I GGATG 1 cut(s) 38
BstH2I RGCGCY 2 cut(s) 99, 116
BstHHI GCGC 2 cut(s) 98, 115
BstKTI GATC 2 cut(s) 63, 329
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 2 cut(s) 60, 326
BstMWI GCNNNNNNNGC 2 cut(s) 23, 182
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 4
BsuRI GGCC 1 cut(s) 264
BtgZI GCGATG 2 cut(s) 64, 264
BtsCI GGATG 1 cut(s) 38
BveI ACCTGC 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 100, 174
CaiI CAGNNNCTG 1 cut(s) 32
CfoI GCGC 2 cut(s) 98, 115
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 2 cut(s) 263, 298
Csp6I GTAC 1 cut(s) 305
CviJI RGCY 4 cut(s) 32, 176, 264, 287
CviKI_1 RGCY 4 cut(s) 32, 176, 264, 287
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 2 cut(s) 69, 92
DpnI GATC 2 cut(s) 62, 328
DpnII GATC 2 cut(s) 60, 326
DraI TTTAAA 2 cut(s) 147, 241
Eco130I CCWWGG 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 298
EcoO109I RGGNCCY 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaqI GGGAC 2 cut(s) 39, 224
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 1 cut(s) 367
GlaI GCGC 2 cut(s) 97, 114
GluI GCNGC 1 cut(s) 18
GsuI CTGGAG 1 cut(s) 54
HaeII RGCGCY 2 cut(s) 99, 116
HaeIII GGCC 1 cut(s) 264
HapII CCGG 1 cut(s) 99
HhaI GCGC 2 cut(s) 98, 115
Hin6I GCGC 2 cut(s) 96, 113
HinP1I GCGC 2 cut(s) 96, 113
HinfI GANTC 4 cut(s) 5, 73, 212, 319
HpaII CCGG 1 cut(s) 99
Hpy188I TCNGA 2 cut(s) 72, 363
Hpy188III TCNNGA 2 cut(s) 133, 203
HpyAV CCTTC 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 3 cut(s) 20, 154, 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 182
HpyF3I CTNAG 2 cut(s) 69, 92
HpySE526I ACGT 1 cut(s) 141
HspAI GCGC 2 cut(s) 96, 113
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
Kzo9I GATC 2 cut(s) 60, 326
LmnI GCTCC 5 cut(s) 23, 29, 35, 54, 259
Lsp1109I GCAGC 1 cut(s) 4
LweI GCATC 3 cut(s) 47, 194, 241
MaeI CTAG 1 cut(s) 367
MaeII ACGT 1 cut(s) 141
MalI GATC 2 cut(s) 62, 328
MboI GATC 2 cut(s) 60, 326
MboII GAAGA 2 cut(s) 148, 233
MfeI CAATTG 1 cut(s) 44
MluCI AATT 3 cut(s) 44, 148, 330
MlyI GAGTC 2 cut(s) 14, 206
MnlI CCTC 2 cut(s) 78, 276
MroNI GCCGGC 1 cut(s) 98
MseI TTAA 2 cut(s) 146, 240
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 58
MunI CAATTG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 2 cut(s) 23, 182
NaeI GCCGGC 1 cut(s) 100
NdeII GATC 2 cut(s) 60, 326
NgoMIV GCCGGC 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 103
PdiI GCCGGC 1 cut(s) 100
PfeI GAWTC 2 cut(s) 73, 319
PkrI GCNGC 1 cut(s) 19
PleI GAGTC 2 cut(s) 13, 206
PpsI GAGTC 2 cut(s) 13, 206
Psp1406I AACGTT 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 2 cut(s) 263, 298
PstI CTGCAG 1 cut(s) 22
PstNI CAGNNNCTG 1 cut(s) 32
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SaqAI TTAA 2 cut(s) 146, 240
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 2 cut(s) 60, 326
Sau96I GGNCC 2 cut(s) 263, 298
SchI GAGTC 2 cut(s) 14, 206
ScrFI CCNGG 1 cut(s) 58
SetI ASST 7 cut(s) 34, 70, 131, 144, 178, 201, 239
SfaNI GCATC 3 cut(s) 47, 194, 241
SfcI CTRYAG 1 cut(s) 18
SinI GGWCC 1 cut(s) 298
Sse9I AATT 3 cut(s) 44, 148, 330
SspMI CTAG 1 cut(s) 367
StyD4I CCNGG 1 cut(s) 56
StyI CCWWGG 1 cut(s) 259
TaiI ACGT 1 cut(s) 144
TasI AATT 3 cut(s) 44, 148, 330
TatI WGTACW 1 cut(s) 304
TfiI GAWTC 2 cut(s) 73, 319
Tru1I TTAA 2 cut(s) 146, 240
Tru9I TTAA 2 cut(s) 146, 240
TseI GCWGC 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 298
XapI RAATTY 1 cut(s) 148
XspI CTAG 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.