RLG00000030809

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014783
Physical Location & Seq
Reverse (-)
67922000 .. 67924079
2080 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030809

Sequence Viewer

Length: 342 bp
ATGGAGTCCGTATTTGCTGCAGGAGCTGGAGCATCCCAATTGCTCCGTCCCAGTGTCGCACCTCAGATTCCCATCGCTCTCAAACTGAGCGCCGCCGCCGATAAAGCCCCTTTTAATTTCAGGTTCAAGAAGAACGTTTTAAATTTGCAAATAAGGGAAAGATGGCAAGCTGTGTCTGCATCAAAATCTAACTTTCCAGATGGGGATTCCATCGAAGATAAATCTGGCAGGGTTAAAAGTGGTGATGCTCCCCAAGGCCCTCCTTTCCTTACCATCTTGGCTGGATTTCTAGTCCTTTTACTGCATGCATCTAGAATTATCATCAATGAAGACGCGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.1

Weight (kDa)

9.6

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014783)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00090
malus_domestica MD02G1319200.v1.1 MD07G1001500.v1.1
prunus_persica Prupe.2G003000_v2.0.a1
pyrus_communis pycom02g26740
rosa_chinensis RchiOBHm_Chr1g0313281
rosa_laevigata RLG00000030809
rosa_multiflora Rmu_sc0000035.1_g000003 Rmu_sc0004761.1_g000010
rosa_roxburghii Rroxscaffold_4G00332280
rosa_rugosa RorugPtG0002600.1
rosa_samantha Rh1AG002400 Rh1CG004500 Rh1CG006900 Rh1CG007000 Rh1DG002300
rosa_wichuraiana Rw1G000150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 335
AciI CCGC 2 cut(s) 93, 96
AclI AACGTT 1 cut(s) 135
AcsI RAATTY 1 cut(s) 142
AgsI TTSAA 1 cut(s) 127
AluBI AGCT 2 cut(s) 26, 170
AluI AGCT 2 cut(s) 26, 170
AlwNI CAGNNNCTG 1 cut(s) 26
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 142
AspLEI GCGC 2 cut(s) 92, 337
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 4
BccI CCATC 5 cut(s) 80, 156, 194, 218, 281
BfaI CTAG 3 cut(s) 290, 312, 340
BfmI CTRYAG 1 cut(s) 18
BfoI RGCGCY 1 cut(s) 93
BisI GCNGC 3 cut(s) 18, 93, 96
BlsI GCNGC 3 cut(s) 19, 94, 97
BmgT120I GGNCC 1 cut(s) 257
BmrI ACTGGG 1 cut(s) 45
BmsI GCATC 4 cut(s) 41, 188, 235, 317
BmuI ACTGGG 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 336
BpmI CTGGAG 1 cut(s) 48
BsaBI GATNNNNATC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 51
Bse8I GATNNNNATC 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 1 cut(s) 32
BseJI GATNNNNATC 1 cut(s) 71
BseMII CTCAG 2 cut(s) 77, 77
BseNI ACTGG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 335
BshFI GGCC 1 cut(s) 258
BslFI GGGAC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 33
BsnI GGCC 1 cut(s) 258
BspACI CCGC 2 cut(s) 93, 96
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 2 cut(s) 76, 78
BspFNI CGCG 1 cut(s) 335
BspMAI CTGCAG 1 cut(s) 22
BsrI ACTGG 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 253
BssT1I CCWWGG 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 168, 306
BstDEI CTNAG 2 cut(s) 63, 86
BstF5I GGATG 1 cut(s) 32
BstFNI CGCG 1 cut(s) 335
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 2 cut(s) 92, 337
BstMWI GCNNNNNNNGC 3 cut(s) 23, 104, 176
BstNSI RCATGY 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 18
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 4
BstV2I GAAGAC 1 cut(s) 336
BsuRI GGCC 1 cut(s) 258
BtgZI GCGATG 1 cut(s) 58
BtsCI GGATG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 58
Cac8I GCNNGC 2 cut(s) 168, 306
CaiI CAGNNNCTG 1 cut(s) 26
CfoI GCGC 2 cut(s) 92, 337
Cfr13I GGNCC 1 cut(s) 257
CviAII CATG 1 cut(s) 305
CviJI RGCY 5 cut(s) 26, 107, 170, 258, 281
CviKI_1 RGCY 5 cut(s) 26, 107, 170, 258, 281
DdeI CTNAG 2 cut(s) 63, 86
DraI TTTAAA 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 253
EcoT22I ATGCAT 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 253
FaeI CATG 1 cut(s) 308
FaiI YATR 1 cut(s) 306
FaqI GGGAC 1 cut(s) 33
FatI CATG 1 cut(s) 304
Fnu4HI GCNGC 3 cut(s) 18, 93, 96
FokI GGATG 1 cut(s) 19
Fsp4HI GCNGC 3 cut(s) 18, 93, 96
FspBI CTAG 3 cut(s) 290, 312, 340
GlaI GCGC 2 cut(s) 91, 336
GluI GCNGC 3 cut(s) 18, 93, 96
GsuI CTGGAG 1 cut(s) 48
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 1 cut(s) 258
HhaI GCGC 2 cut(s) 92, 337
Hin1II CATG 1 cut(s) 308
Hin6I GCGC 2 cut(s) 90, 335
HinP1I GCGC 2 cut(s) 90, 335
HinfI GANTC 3 cut(s) 5, 67, 206
HphI GGTGA 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 3 cut(s) 127, 197, 312
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 5 cut(s) 20, 148, 179, 304, 308
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 104, 176
HpyF3I CTNAG 2 cut(s) 63, 86
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 1 cut(s) 308
HspAI GCGC 2 cut(s) 90, 335
LmnI GCTCC 4 cut(s) 23, 29, 48, 253
LpnPI CCDG 8 cut(s) 6, 12, 64, 106, 210, 210, 214, 267
Lsp1109I GCAGC 1 cut(s) 4
LweI GCATC 4 cut(s) 41, 188, 235, 317
MaeI CTAG 3 cut(s) 290, 312, 340
MaeII ACGT 1 cut(s) 135
MboII GAAGA 3 cut(s) 142, 227, 341
MfeI CAATTG 1 cut(s) 38
MluCI AATT 4 cut(s) 38, 115, 142, 315
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 2 cut(s) 72, 270
Mph1103I ATGCAT 1 cut(s) 310
MseI TTAA 3 cut(s) 114, 140, 234
MunI CAATTG 1 cut(s) 38
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 3 cut(s) 23, 104, 176
NlaIII CATG 1 cut(s) 308
NsiI ATGCAT 1 cut(s) 310
NspI RCATGY 1 cut(s) 308
PaeI GCATGC 1 cut(s) 308
PfeI GAWTC 2 cut(s) 67, 206
PkrI GCNGC 3 cut(s) 19, 94, 97
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp1406I AACGTT 1 cut(s) 135
PspPI GGNCC 1 cut(s) 257
PstI CTGCAG 1 cut(s) 22
PstNI CAGNNNCTG 1 cut(s) 26
SaqAI TTAA 3 cut(s) 114, 140, 234
SatI GCNGC 3 cut(s) 18, 93, 96
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 1 cut(s) 14
SetI ASST 5 cut(s) 28, 64, 125, 138, 172
SfaNI GCATC 4 cut(s) 41, 188, 235, 317
SfcI CTRYAG 1 cut(s) 18
SphI GCATGC 1 cut(s) 308
Sse9I AATT 4 cut(s) 38, 115, 142, 315
SsiI CCGC 2 cut(s) 93, 96
SspMI CTAG 3 cut(s) 290, 312, 340
StyI CCWWGG 1 cut(s) 253
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 213
TasI AATT 4 cut(s) 38, 115, 142, 315
TauI GCSGC 2 cut(s) 95, 98
TfiI GAWTC 2 cut(s) 67, 206
Tru1I TTAA 3 cut(s) 114, 140, 234
Tru9I TTAA 3 cut(s) 114, 140, 234
TscAI CASTG 1 cut(s) 58
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 342
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 1 cut(s) 58
XapI RAATTY 1 cut(s) 142
XbaI TCTAGA 1 cut(s) 311
XceI RCATGY 1 cut(s) 308
XspI CTAG 3 cut(s) 290, 312, 340
Zsp2I ATGCAT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.