Rmu_sc0000035.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000035.1
OG0014783
Physical Location & Seq
Forward (+)
15609 .. 19070
3462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000035.1_g000003.1.cds

Sequence Viewer

Length: 492 bp
atggagtccgtatttgctgcaggagcaggagcaggagcatcccaattgctccgtcccagggtcgcacctcagattcccatcgctctcaaactgagcgccgccgccgataaagcgccttttgatttcaggttcaagaagaacgtttcaaatttgcaaataagggaaagatggcaagctgtgtctgcatcacaatctaaccttccagatggggattccatcgaagataaatcaggcagggttaaaagtggtgatgctcctcaaggccctcctttccttaccatcttggctggatttctagtccttttactggtgctccgtttattgcttaaacgacaaggtcccgttctcgggatccgaccggacagaccatccggagagcttctacgcagcgacgaagaaagcgggcgaggcccacacaatagacaacagagaactggcagatttacatcccttgagaagagtaacgaggtcggtgatattgttgtggactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

17.62

Weight (kDa)

9.97

Isoelectric Point (pI)

49.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014783)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00090
malus_domestica MD02G1319200.v1.1 MD07G1001500.v1.1
prunus_persica Prupe.2G003000_v2.0.a1
pyrus_communis pycom02g26740
rosa_chinensis RchiOBHm_Chr1g0313281
rosa_laevigata RLG00000030809
rosa_multiflora Rmu_sc0000035.1_g000003 Rmu_sc0004761.1_g000010
rosa_roxburghii Rroxscaffold_4G00332280
rosa_rugosa RorugPtG0002600.1
rosa_samantha Rh1AG002400 Rh1CG004500 Rh1CG006900 Rh1CG007000 Rh1DG002300
rosa_wichuraiana Rw1G000150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 371
AciI CCGC 3 cut(s) 99, 102, 402
AclI AACGTT 1 cut(s) 141
AclWI GGATC 2 cut(s) 346, 359
AcsI RAATTY 1 cut(s) 148
AfiI CCNNNNNNNGG 4 cut(s) 58, 307, 347, 348
AgsI TTSAA 2 cut(s) 133, 147
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 2 cut(s) 176, 379
AluI AGCT 2 cut(s) 176, 379
Alw21I GWGCWC 1 cut(s) 315
AlwI GGATC 2 cut(s) 346, 359
Ama87I CYCGRG 1 cut(s) 347
Aor13HI TCCGGA 1 cut(s) 371
AoxI GGCC 2 cut(s) 262, 409
ApeKI GCWGC 2 cut(s) 17, 387
ApoI RAATTY 1 cut(s) 148
AspLEI GCGC 2 cut(s) 98, 115
AspS9I GGNCC 3 cut(s) 263, 338, 410
AsuHPI GGTGA 2 cut(s) 260, 485
AvaI CYCGRG 1 cut(s) 347
AvaII GGWCC 1 cut(s) 338
BamHI GGATCC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 2 cut(s) 4, 399
BccI CCATC 6 cut(s) 86, 162, 200, 224, 287, 376
BciT130I CCWGG 1 cut(s) 58
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 18
BfoI RGCGCY 2 cut(s) 99, 116
BisI GCNGC 4 cut(s) 18, 99, 102, 388
BlsI GCNGC 4 cut(s) 19, 100, 103, 389
Bme1390I CCNGG 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 338
BmeT110I CYCGRG 1 cut(s) 347
BmgT120I GGNCC 3 cut(s) 263, 338, 410
BmiI GGNNCC 2 cut(s) 340, 353
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 3 cut(s) 47, 194, 241
BpuEI CTTGAG 2 cut(s) 243, 473
BsaBI GATNNNNATC 2 cut(s) 77, 445
BsaJI CCNNGG 2 cut(s) 56, 57
BsaWI WCCGGW 2 cut(s) 358, 371
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 307, 347, 348
Bse1I ACTGG 2 cut(s) 312, 439
Bse8I GATNNNNATC 2 cut(s) 77, 445
BseAI TCCGGA 1 cut(s) 371
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 2 cut(s) 56, 57
BseGI GGATG 3 cut(s) 38, 368, 446
BseJI GATNNNNATC 2 cut(s) 77, 445
BseLI CCNNNNNNNGG 4 cut(s) 58, 307, 347, 348
BseMII CTCAG 2 cut(s) 83, 83
BseNI ACTGG 2 cut(s) 312, 439
BseRI GAGGAG 1 cut(s) 246
BseXI GCAGC 2 cut(s) 4, 399
Bsh1285I CGRYCG 1 cut(s) 359
BshFI GGCC 2 cut(s) 264, 411
BsiEI CGRYCG 1 cut(s) 359
BsiHKAI GWGCWC 1 cut(s) 315
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 2 cut(s) 359, 372
BslFI GGGAC 2 cut(s) 39, 324
BslI CCNNNNNNNGG 4 cut(s) 58, 307, 347, 348
BsmFI GGGAC 2 cut(s) 39, 324
BsnI GGCC 2 cut(s) 264, 411
BsoBI CYCGRG 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 315
Bsp13I TCCGGA 1 cut(s) 371
Bsp143I GATC 1 cut(s) 351
BspACI CCGC 3 cut(s) 99, 102, 402
BspANI GGCC 2 cut(s) 264, 411
BspCNI CTCAG 2 cut(s) 82, 84
BspEI TCCGGA 1 cut(s) 371
BspLI GGNNCC 2 cut(s) 340, 353
BspMAI CTGCAG 1 cut(s) 22
BspPI GGATC 2 cut(s) 346, 359
BsrI ACTGG 2 cut(s) 312, 439
BssECI CCNNGG 2 cut(s) 56, 57
BssMI GATC 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 452
BstC8I GCNNGC 2 cut(s) 174, 404
BstDEI CTNAG 2 cut(s) 69, 92
BstF5I GGATG 3 cut(s) 38, 368, 446
BstH2I RGCGCY 2 cut(s) 99, 116
BstHHI GCGC 2 cut(s) 98, 115
BstKTI GATC 1 cut(s) 354
BstMBI GATC 1 cut(s) 351
BstMCI CGRYCG 1 cut(s) 359
BstMWI GCNNNNNNNGC 4 cut(s) 23, 110, 182, 408
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 18
BstV1I GCAGC 2 cut(s) 4, 399
BstX2I RGATCY 1 cut(s) 351
BstYI RGATCY 1 cut(s) 351
BsuRI GGCC 2 cut(s) 264, 411
BtgZI GCGATG 1 cut(s) 64
BtsCI GGATG 3 cut(s) 38, 368, 446
Cac8I GCNNGC 2 cut(s) 174, 404
CfoI GCGC 2 cut(s) 98, 115
Cfr13I GGNCC 3 cut(s) 263, 338, 410
CviJI RGCY 5 cut(s) 176, 264, 287, 379, 411
CviKI_1 RGCY 5 cut(s) 176, 264, 287, 379, 411
DdeI CTNAG 2 cut(s) 69, 92
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
Eco47I GGWCC 1 cut(s) 338
Eco88I CYCGRG 1 cut(s) 347
EcoO109I RGGNCCY 2 cut(s) 263, 338
EcoRII CCWGG 1 cut(s) 56
FaqI GGGAC 2 cut(s) 39, 324
FauI CCCGC 1 cut(s) 395
Fnu4HI GCNGC 4 cut(s) 18, 99, 102, 388
FokI GGATG 3 cut(s) 25, 355, 433
Fsp4HI GCNGC 4 cut(s) 18, 99, 102, 388
FspBI CTAG 1 cut(s) 296
GlaI GCGC 2 cut(s) 97, 114
GluI GCNGC 4 cut(s) 18, 99, 102, 388
HaeII RGCGCY 2 cut(s) 99, 116
HaeIII GGCC 2 cut(s) 264, 411
HapII CCGG 2 cut(s) 359, 372
HhaI GCGC 2 cut(s) 98, 115
Hin6I GCGC 2 cut(s) 96, 113
HinP1I GCGC 2 cut(s) 96, 113
HinfI GANTC 3 cut(s) 5, 73, 212
HpaII CCGG 2 cut(s) 359, 372
HphI GGTGA 2 cut(s) 260, 485
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 2 cut(s) 72, 356
Hpy188III TCNNGA 4 cut(s) 133, 203, 349, 372
Hpy8I GTNNAC 1 cut(s) 487
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 3 cut(s) 20, 154, 185
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 110, 182, 408
HpyF3I CTNAG 2 cut(s) 69, 92
HpySE526I ACGT 1 cut(s) 141
HspAI GCGC 2 cut(s) 96, 113
Kpn2I TCCGGA 1 cut(s) 371
Kzo9I GATC 1 cut(s) 351
LmnI GCTCC 6 cut(s) 23, 29, 35, 54, 259, 318
Lsp1109I GCAGC 2 cut(s) 4, 399
LweI GCATC 3 cut(s) 47, 194, 241
MaeI CTAG 1 cut(s) 296
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 461
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 4 cut(s) 148, 233, 407, 469
MfeI CAATTG 1 cut(s) 44
MflI RGATCY 1 cut(s) 351
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 2 cut(s) 44, 148
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 379
MnlI CCTC 5 cut(s) 78, 267, 276, 401, 460
MroI TCCGGA 1 cut(s) 371
MseI TTAA 2 cut(s) 240, 327
MspI CCGG 2 cut(s) 359, 372
MspR9I CCNGG 1 cut(s) 58
MunI CAATTG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 4 cut(s) 23, 110, 182, 408
NdeII GATC 1 cut(s) 351
NlaIV GGNNCC 2 cut(s) 340, 353
PasI CCCWGGG 1 cut(s) 57
PfeI GAWTC 2 cut(s) 73, 212
PflFI GACNNNGTC 1 cut(s) 336
PkrI GCNGC 4 cut(s) 19, 100, 103, 389
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 338
Psp1406I AACGTT 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 2 cut(s) 340, 353
PspPI GGNCC 3 cut(s) 263, 338, 410
PspPPI RGGWCCY 1 cut(s) 338
PstI CTGCAG 1 cut(s) 22
PsuI RGATCY 1 cut(s) 351
PsyI GACNNNGTC 1 cut(s) 336
SaqAI TTAA 2 cut(s) 240, 327
SatI GCNGC 4 cut(s) 18, 99, 102, 388
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 3 cut(s) 263, 338, 410
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 1 cut(s) 315
SetI ASST 8 cut(s) 70, 131, 144, 178, 201, 340, 381, 471
SfaNI GCATC 3 cut(s) 47, 194, 241
SfcI CTRYAG 1 cut(s) 18
SinI GGWCC 1 cut(s) 338
SmlI CTYRAG 2 cut(s) 258, 452
SmoI CTYRAG 2 cut(s) 258, 452
Sse9I AATT 2 cut(s) 44, 148
SsiI CCGC 3 cut(s) 99, 102, 402
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 56
TaiI ACGT 1 cut(s) 144
TaqI TCGA 1 cut(s) 219
TasI AATT 2 cut(s) 44, 148
TauI GCSGC 2 cut(s) 101, 104
TfiI GAWTC 2 cut(s) 73, 212
Tru1I TTAA 2 cut(s) 240, 327
Tru9I TTAA 2 cut(s) 240, 327
TseI GCWGC 2 cut(s) 17, 387
TspGWI ACGGA 2 cut(s) 41, 305
Tth111I GACNNNGTC 1 cut(s) 336
VpaK11BI GGWCC 1 cut(s) 338
XapI RAATTY 1 cut(s) 148
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.