Rh1CG007000

GDP-mannose 4,6 dehydratase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0014783
Physical Location & Seq
Forward (+)
1071792 .. 1072073
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG007000.1

Sequence Viewer

Length: 282 bp
ATGCAGCTGAGGGATCCCTGTTGTCTTCATTATCGGAGAGATTTACCGGTTCCCATCGAAACAAGGCAGCGTGGTGGGCCAGGTTCTAGCCGGCGCTGTCTCGGCTATGAAGATCCGGATCTATCACGCCACTGTCTGCGCTGGGCTGGGTGCTCCGTTTACGGCTTAAACGACAAGGTCCCGTTCTCGGGATCCAACCGGACAGACCATCCGGCGAGCCTGAGCTGCCAGGTGCATGTCTTCTGGCCGTCGCTGGTGAGAGTGTCGTCAACGAGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Epimerase GDP_Man_Dehyd

Protein Analysis

93

Amino Acids

10.53

Weight (kDa)

9.15

Isoelectric Point (pI)

72.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014783)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00090
malus_domestica MD02G1319200.v1.1 MD07G1001500.v1.1
prunus_persica Prupe.2G003000_v2.0.a1
pyrus_communis pycom02g26740
rosa_chinensis RchiOBHm_Chr1g0313281
rosa_laevigata RLG00000030809
rosa_multiflora Rmu_sc0000035.1_g000003 Rmu_sc0004761.1_g000010
rosa_roxburghii Rroxscaffold_4G00332280
rosa_rugosa RorugPtG0002600.1
rosa_samantha Rh1AG002400 Rh1CG004500 Rh1CG006900 Rh1CG007000 Rh1DG002300
rosa_wichuraiana Rw1G000150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 115
AclWI GGATC 6 cut(s) 8, 21, 107, 126, 186, 199
AcoI YGGCCR 1 cut(s) 245
AfiI CCNNNNNNNGG 2 cut(s) 187, 188
AgeI ACCGGT 1 cut(s) 46
AjnI CCWGG 2 cut(s) 79, 228
AluBI AGCT 2 cut(s) 7, 225
AluI AGCT 2 cut(s) 7, 225
Alw21I GWGCWC 1 cut(s) 155
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 6 cut(s) 8, 21, 107, 126, 186, 199
Ama87I CYCGRG 1 cut(s) 187
Aor13HI TCCGGA 1 cut(s) 115
AoxI GGCC 2 cut(s) 77, 245
ApeKI GCWGC 3 cut(s) 4, 67, 225
AsiGI ACCGGT 1 cut(s) 46
AspLEI GCGC 2 cut(s) 96, 141
AspS9I GGNCC 2 cut(s) 77, 178
AsuHPI GGTGA 1 cut(s) 268
AvaI CYCGRG 1 cut(s) 187
AvaII GGWCC 1 cut(s) 178
BamHI GGATCC 2 cut(s) 13, 191
BbsI GAAGAC 2 cut(s) 17, 232
Bbv12I GWGCWC 1 cut(s) 155
BbvCI CCTCAGC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 16, 79, 212
BccI CCATC 2 cut(s) 62, 216
BceAI ACGGC 2 cut(s) 178, 232
BciT130I CCWGG 2 cut(s) 81, 230
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 97
BisI GCNGC 3 cut(s) 5, 68, 226
BlsI GCNGC 3 cut(s) 6, 69, 227
Bme1390I CCNGG 2 cut(s) 81, 230
Bme18I GGWCC 1 cut(s) 178
BmeT110I CYCGRG 1 cut(s) 187
BmgT120I GGNCC 2 cut(s) 77, 178
BmiI GGNNCC 4 cut(s) 15, 51, 180, 193
BmrFI CCNGG 2 cut(s) 81, 230
BpiI GAAGAC 2 cut(s) 17, 232
Bpu10I CCTNAGC 2 cut(s) 8, 221
BsaBI GATNNNNATC 1 cut(s) 117
BsaWI WCCGGW 3 cut(s) 46, 115, 198
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 188
Bse118I RCCGGY 2 cut(s) 46, 90
Bse8I GATNNNNATC 1 cut(s) 117
BseAI TCCGGA 1 cut(s) 115
BseBI CCWGG 2 cut(s) 81, 230
BseGI GGATG 1 cut(s) 208
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 2 cut(s) 187, 188
BseMII CTCAG 1 cut(s) 212
BseXI GCAGC 3 cut(s) 16, 79, 212
BseYI CCCAGC 2 cut(s) 141, 146
BshFI GGCC 2 cut(s) 79, 247
BshTI ACCGGT 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 155
BsiHKCI CYCGRG 1 cut(s) 187
BsiSI CCGG 5 cut(s) 47, 91, 116, 199, 212
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 2 cut(s) 187, 188
BsmAI GTCTC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 2 cut(s) 79, 247
BsoBI CYCGRG 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 155
Bsp13I TCCGGA 1 cut(s) 115
Bsp143I GATC 4 cut(s) 13, 112, 118, 191
BspANI GGCC 2 cut(s) 79, 247
BspCNI CTCAG 1 cut(s) 213
BspEI TCCGGA 1 cut(s) 115
BspLI GGNNCC 4 cut(s) 15, 51, 180, 193
BspPI GGATC 6 cut(s) 8, 21, 107, 126, 186, 199
BsrFI RCCGGY 2 cut(s) 46, 90
BssAI RCCGGY 2 cut(s) 46, 90
BssMI GATC 4 cut(s) 13, 112, 118, 191
Bst2UI CCWGG 2 cut(s) 81, 230
Bst4CI ACNGT 1 cut(s) 134
BstC8I GCNNGC 2 cut(s) 92, 217
BstDEI CTNAG 2 cut(s) 8, 221
BstF5I GGATG 1 cut(s) 208
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 2 cut(s) 96, 141
BstKTI GATC 4 cut(s) 16, 115, 121, 194
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 4 cut(s) 13, 112, 118, 191
BstMWI GCNNNNNNNGC 3 cut(s) 76, 102, 225
BstNI CCWGG 2 cut(s) 81, 230
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 79, 228
BstV1I GCAGC 3 cut(s) 16, 79, 212
BstV2I GAAGAC 2 cut(s) 17, 232
BstX2I RGATCY 4 cut(s) 13, 112, 118, 191
BstYI RGATCY 4 cut(s) 13, 112, 118, 191
BsuRI GGCC 2 cut(s) 79, 247
BtsCI GGATG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 92, 217
CfoI GCGC 2 cut(s) 96, 141
Cfr10I RCCGGY 2 cut(s) 46, 90
Cfr13I GGNCC 2 cut(s) 77, 178
CspAI ACCGGT 1 cut(s) 46
CviAII CATG 1 cut(s) 236
CviJI RGCY 9 cut(s) 7, 79, 90, 105, 146, 165, 219, 225, 247
CviKI_1 RGCY 9 cut(s) 7, 79, 90, 105, 146, 165, 219, 225, 247
DdeI CTNAG 2 cut(s) 8, 221
DpnI GATC 4 cut(s) 15, 114, 120, 193
DpnII GATC 4 cut(s) 13, 112, 118, 191
EaeI YGGCCR 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 178
Eco88I CYCGRG 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 2 cut(s) 79, 228
FaeI CATG 1 cut(s) 239
FaiI YATR 2 cut(s) 108, 237
FaqI GGGAC 1 cut(s) 164
FatI CATG 1 cut(s) 235
Fnu4HI GCNGC 3 cut(s) 5, 68, 226
FokI GGATG 1 cut(s) 195
Fsp4HI GCNGC 3 cut(s) 5, 68, 226
FspBI CTAG 1 cut(s) 87
GlaI GCGC 2 cut(s) 95, 140
GluI GCNGC 3 cut(s) 5, 68, 226
GsaI CCCAGC 2 cut(s) 145, 150
HaeII RGCGCY 1 cut(s) 97
HaeIII GGCC 2 cut(s) 79, 247
HapII CCGG 5 cut(s) 47, 91, 116, 199, 212
HhaI GCGC 2 cut(s) 96, 141
Hin1II CATG 1 cut(s) 239
Hin6I GCGC 2 cut(s) 94, 139
HinP1I GCGC 2 cut(s) 94, 139
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HpaII CCGG 5 cut(s) 47, 91, 116, 199, 212
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 160, 270
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 2 cut(s) 116, 189
Hpy8I GTNNAC 2 cut(s) 160, 270
Hpy99I CGWCG 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 2 cut(s) 4, 235
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 102, 225
HpyF3I CTNAG 2 cut(s) 8, 221
Hsp92II CATG 1 cut(s) 239
HspAI GCGC 2 cut(s) 94, 139
Kpn2I TCCGGA 1 cut(s) 115
KroI GCCGGC 1 cut(s) 90
KroNI GCCGGC 1 cut(s) 92
Kzo9I GATC 4 cut(s) 13, 112, 118, 191
LmnI GCTCC 1 cut(s) 158
Lsp1109I GCAGC 3 cut(s) 16, 79, 212
MaeI CTAG 1 cut(s) 87
MalI GATC 4 cut(s) 15, 114, 120, 193
MboI GATC 4 cut(s) 13, 112, 118, 191
MboII GAAGA 3 cut(s) 17, 122, 232
MflI RGATCY 4 cut(s) 13, 112, 118, 191
MhlI GDGCHC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 2 cut(s) 3, 267
MroI TCCGGA 1 cut(s) 115
MroNI GCCGGC 1 cut(s) 90
MseI TTAA 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 5 cut(s) 47, 91, 116, 199, 212
MspR9I CCNGG 2 cut(s) 81, 230
MvaI CCWGG 2 cut(s) 81, 230
MwoI GCNNNNNNNGC 3 cut(s) 76, 102, 225
NaeI GCCGGC 1 cut(s) 92
NdeII GATC 4 cut(s) 13, 112, 118, 191
NgoMIV GCCGGC 1 cut(s) 90
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 4 cut(s) 15, 51, 180, 193
NmeAIII GCCGAG 1 cut(s) 81
NspI RCATGY 1 cut(s) 239
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PdiI GCCGGC 1 cut(s) 92
PflFI GACNNNGTC 1 cut(s) 176
PinAI ACCGGT 1 cut(s) 46
PkrI GCNGC 3 cut(s) 6, 69, 227
PpuMI RGGWCCY 1 cut(s) 178
Psp5II RGGWCCY 1 cut(s) 178
Psp6I CCWGG 2 cut(s) 79, 228
PspFI CCCAGC 2 cut(s) 141, 146
PspGI CCWGG 2 cut(s) 79, 228
PspN4I GGNNCC 4 cut(s) 15, 51, 180, 193
PspPI GGNCC 2 cut(s) 77, 178
PspPPI RGGWCCY 1 cut(s) 178
PsuI RGATCY 4 cut(s) 13, 112, 118, 191
PsyI GACNNNGTC 1 cut(s) 176
PvuII CAGCTG 1 cut(s) 7
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 3 cut(s) 5, 68, 226
Sau3AI GATC 4 cut(s) 13, 112, 118, 191
Sau96I GGNCC 2 cut(s) 77, 178
ScrFI CCNGG 2 cut(s) 81, 230
SduI GDGCHC 1 cut(s) 155
SetI ASST 5 cut(s) 9, 85, 180, 227, 234
SinI GGWCC 1 cut(s) 178
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 2 cut(s) 79, 228
TaaI ACNGT 1 cut(s) 134
TaqI TCGA 1 cut(s) 57
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 1 cut(s) 137
TseI GCWGC 3 cut(s) 4, 67, 225
TspDTI ATGAA 2 cut(s) 17, 123
TspGWI ACGGA 1 cut(s) 145
TspRI CASTG 1 cut(s) 137
Tth111I GACNNNGTC 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 178
XceI RCATGY 1 cut(s) 239
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.