Rmu_sc0004761.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004761.1
OG0014783
Physical Location & Seq
Reverse (-)
48012 .. 50148
2137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004761.1_g000010.1.cds

Sequence Viewer

Length: 369 bp
atggagtccgtatttgctgcaggagcaggagcaggagcatcccaattgctccgtcccagggtcgcacctcagattcccatcgctctcaaactgagcgccgccgccgataaagcgccttttgatttcaggttcaagaagaacgttttaaatttgcaaataagggaaagatggcaagctgtgtctgcatcaaaatctaaccttccagatggggattccatcgaagataaatcaggcagggttaaaagtggtgatgttcctcaaggccctcctttccttaccatcttggctggatttctagtccttttactggtattctggattcttggatcaattctaatgtggttgattagtttctttgttcggaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.28

Weight (kDa)

10.1

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014783)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00090
malus_domestica MD02G1319200.v1.1 MD07G1001500.v1.1
prunus_persica Prupe.2G003000_v2.0.a1
pyrus_communis pycom02g26740
rosa_chinensis RchiOBHm_Chr1g0313281
rosa_laevigata RLG00000030809
rosa_multiflora Rmu_sc0000035.1_g000003 Rmu_sc0004761.1_g000010
rosa_roxburghii Rroxscaffold_4G00332280
rosa_rugosa RorugPtG0002600.1
rosa_samantha Rh1AG002400 Rh1CG004500 Rh1CG006900 Rh1CG007000 Rh1DG002300
rosa_wichuraiana Rw1G000150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 99, 102
AclI AACGTT 1 cut(s) 141
AclWI GGATC 1 cut(s) 334
AcsI RAATTY 1 cut(s) 148
AfiI CCNNNNNNNGG 2 cut(s) 58, 307
AgsI TTSAA 1 cut(s) 133
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
AlwI GGATC 1 cut(s) 334
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 148
AspLEI GCGC 2 cut(s) 98, 115
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 260
BbvI GCAGC 1 cut(s) 4
BccI CCATC 5 cut(s) 86, 162, 200, 224, 287
BciT130I CCWGG 1 cut(s) 58
BfaI CTAG 2 cut(s) 296, 367
BfmI CTRYAG 1 cut(s) 18
BfoI RGCGCY 2 cut(s) 99, 116
BisI GCNGC 3 cut(s) 18, 99, 102
BlsI GCNGC 3 cut(s) 19, 100, 103
Bme1390I CCNGG 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 2 cut(s) 47, 194
BpuEI CTTGAG 1 cut(s) 243
BsaBI GATNNNNATC 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 56, 57
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 307
Bse1I ACTGG 1 cut(s) 312
Bse8I GATNNNNATC 1 cut(s) 77
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 2 cut(s) 56, 57
BseGI GGATG 1 cut(s) 38
BseJI GATNNNNATC 1 cut(s) 77
BseLI CCNNNNNNNGG 2 cut(s) 58, 307
BseMII CTCAG 2 cut(s) 83, 83
BseNI ACTGG 1 cut(s) 312
BseXI GCAGC 1 cut(s) 4
BshFI GGCC 1 cut(s) 264
BslFI GGGAC 1 cut(s) 39
BslI CCNNNNNNNGG 2 cut(s) 58, 307
BsmFI GGGAC 1 cut(s) 39
BsnI GGCC 1 cut(s) 264
Bsp143I GATC 1 cut(s) 326
BspACI CCGC 2 cut(s) 99, 102
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 2 cut(s) 82, 84
BspMAI CTGCAG 1 cut(s) 22
BspPI GGATC 1 cut(s) 334
BsrI ACTGG 1 cut(s) 312
BssECI CCNNGG 2 cut(s) 56, 57
BssMI GATC 1 cut(s) 326
Bst2UI CCWGG 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 2 cut(s) 69, 92
BstF5I GGATG 1 cut(s) 38
BstH2I RGCGCY 2 cut(s) 99, 116
BstHHI GCGC 2 cut(s) 98, 115
BstKTI GATC 1 cut(s) 329
BstMBI GATC 1 cut(s) 326
BstMWI GCNNNNNNNGC 3 cut(s) 23, 110, 182
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 4
BsuRI GGCC 1 cut(s) 264
BtgZI GCGATG 1 cut(s) 64
BtsCI GGATG 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 174
CfoI GCGC 2 cut(s) 98, 115
Cfr13I GGNCC 1 cut(s) 263
CviJI RGCY 3 cut(s) 176, 264, 287
CviKI_1 RGCY 3 cut(s) 176, 264, 287
DdeI CTNAG 2 cut(s) 69, 92
DpnI GATC 1 cut(s) 328
DpnII GATC 1 cut(s) 326
DraI TTTAAA 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 56
FaqI GGGAC 1 cut(s) 39
Fnu4HI GCNGC 3 cut(s) 18, 99, 102
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 3 cut(s) 18, 99, 102
FspBI CTAG 2 cut(s) 296, 367
GlaI GCGC 2 cut(s) 97, 114
GluI GCNGC 3 cut(s) 18, 99, 102
HaeII RGCGCY 2 cut(s) 99, 116
HaeIII GGCC 1 cut(s) 264
HhaI GCGC 2 cut(s) 98, 115
Hin6I GCGC 2 cut(s) 96, 113
HinP1I GCGC 2 cut(s) 96, 113
HinfI GANTC 4 cut(s) 5, 73, 212, 319
HphI GGTGA 1 cut(s) 260
Hpy188I TCNGA 2 cut(s) 72, 363
Hpy188III TCNNGA 3 cut(s) 133, 203, 316
HpyAV CCTTC 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 3 cut(s) 20, 154, 185
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 110, 182
HpyF3I CTNAG 2 cut(s) 69, 92
HpySE526I ACGT 1 cut(s) 141
HspAI GCGC 2 cut(s) 96, 113
Kzo9I GATC 1 cut(s) 326
LmnI GCTCC 4 cut(s) 23, 29, 35, 54
Lsp1109I GCAGC 1 cut(s) 4
LweI GCATC 2 cut(s) 47, 194
MaeI CTAG 2 cut(s) 296, 367
MaeII ACGT 1 cut(s) 141
MalI GATC 1 cut(s) 328
MboI GATC 1 cut(s) 326
MboII GAAGA 2 cut(s) 148, 233
MfeI CAATTG 1 cut(s) 44
MluCI AATT 3 cut(s) 44, 148, 330
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 3 cut(s) 78, 267, 276
MseI TTAA 2 cut(s) 146, 240
MspR9I CCNGG 1 cut(s) 58
MunI CAATTG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 3 cut(s) 23, 110, 182
NdeII GATC 1 cut(s) 326
PasI CCCWGGG 1 cut(s) 57
PfeI GAWTC 3 cut(s) 73, 212, 319
PkrI GCNGC 3 cut(s) 19, 100, 103
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp1406I AACGTT 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspPI GGNCC 1 cut(s) 263
PstI CTGCAG 1 cut(s) 22
SaqAI TTAA 2 cut(s) 146, 240
SatI GCNGC 3 cut(s) 18, 99, 102
Sau3AI GATC 1 cut(s) 326
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 58
SetI ASST 5 cut(s) 70, 131, 144, 178, 201
SfaNI GCATC 2 cut(s) 47, 194
SfcI CTRYAG 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 258
SmoI CTYRAG 1 cut(s) 258
Sse9I AATT 3 cut(s) 44, 148, 330
SsiI CCGC 2 cut(s) 99, 102
SspMI CTAG 2 cut(s) 296, 367
StyD4I CCNGG 1 cut(s) 56
TaiI ACGT 1 cut(s) 144
TaqI TCGA 1 cut(s) 219
TasI AATT 3 cut(s) 44, 148, 330
TauI GCSGC 2 cut(s) 101, 104
TfiI GAWTC 3 cut(s) 73, 212, 319
Tru1I TTAA 2 cut(s) 146, 240
Tru9I TTAA 2 cut(s) 146, 240
TseI GCWGC 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 41
XapI RAATTY 1 cut(s) 148
XspI CTAG 2 cut(s) 296, 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.