Rh1DG002300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0014783
Physical Location & Seq
Forward (+)
386475 .. 389855
3381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG002300.1

Sequence Viewer

Length: 528 bp
ATGGAAATGGAGTCCGTATTTGCTGCAGGAGCAGGAGCAGGAGCATCCCAATTGCTCCGTCCCAGGGTCGCACCTCAGATTCCCATCGCTCTCAAACTGAGCGCCGCCGCCGATAAAGCGCCTTTTGGTTTCAGGTTCAAGAAGAACGTTTTAAATTTGCAAATAAGGGAAAGATGGCAAGCTGTGTCTGCATCAAAATCTAACCTTCCAGATGGGGATTCCATCGAAGATAAATCAGGCAGGGTTAAAAGTGGTGATGCTCCTCAAGGCCCTCCTTTCCTTACCATCTTGGCTGGATTTCTAGTCCTTTTACTGCGTGGTGGGCCAGGTTCTAGCCGGCGCTGTCTCGGCTATGAAGATCCGGATCTATCACGCCACTGTCTGCGCTGGGCTGGGTGCTCCGTTTACGGCTTAAACGACAAGGTCCCGTTCTCGGGATCCAACCGGACAGACCATCCGGCGAGCCTGAGCTGCCAGGTGCATGTCTTCTGGCCGTCGCTGGTGAGAGTGTCGTCAACGAGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

18.82

Weight (kDa)

9.74

Isoelectric Point (pI)

50.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014783)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00090
malus_domestica MD02G1319200.v1.1 MD07G1001500.v1.1
prunus_persica Prupe.2G003000_v2.0.a1
pyrus_communis pycom02g26740
rosa_chinensis RchiOBHm_Chr1g0313281
rosa_laevigata RLG00000030809
rosa_multiflora Rmu_sc0000035.1_g000003 Rmu_sc0004761.1_g000010
rosa_roxburghii Rroxscaffold_4G00332280
rosa_rugosa RorugPtG0002600.1
rosa_samantha Rh1AG002400 Rh1CG004500 Rh1CG006900 Rh1CG007000 Rh1DG002300
rosa_wichuraiana Rw1G000150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 361
AciI CCGC 2 cut(s) 105, 108
AclI AACGTT 1 cut(s) 147
AclWI GGATC 4 cut(s) 353, 372, 432, 445
AcoI YGGCCR 1 cut(s) 491
AcsI RAATTY 1 cut(s) 154
AfiI CCNNNNNNNGG 3 cut(s) 64, 433, 434
AgsI TTSAA 1 cut(s) 139
AjnI CCWGG 3 cut(s) 62, 325, 474
AluBI AGCT 2 cut(s) 182, 471
AluI AGCT 2 cut(s) 182, 471
Alw21I GWGCWC 1 cut(s) 401
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 4 cut(s) 353, 372, 432, 445
Ama87I CYCGRG 1 cut(s) 433
Aor13HI TCCGGA 1 cut(s) 361
AoxI GGCC 3 cut(s) 268, 323, 491
ApeKI GCWGC 2 cut(s) 23, 471
ApoI RAATTY 1 cut(s) 154
AspLEI GCGC 4 cut(s) 104, 121, 342, 387
AspS9I GGNCC 3 cut(s) 269, 323, 424
AsuHPI GGTGA 2 cut(s) 266, 514
AvaI CYCGRG 1 cut(s) 433
AvaII GGWCC 1 cut(s) 424
BamHI GGATCC 1 cut(s) 437
BbsI GAAGAC 1 cut(s) 478
Bbv12I GWGCWC 1 cut(s) 401
BbvI GCAGC 2 cut(s) 10, 458
BccI CCATC 6 cut(s) 92, 168, 206, 230, 293, 462
BceAI ACGGC 2 cut(s) 424, 478
BciT130I CCWGG 3 cut(s) 64, 327, 476
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 2 cut(s) 302, 333
BfmI CTRYAG 1 cut(s) 24
BfoI RGCGCY 3 cut(s) 105, 122, 343
BisI GCNGC 4 cut(s) 24, 105, 108, 472
BlsI GCNGC 4 cut(s) 25, 106, 109, 473
Bme1390I CCNGG 3 cut(s) 64, 327, 476
Bme18I GGWCC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 433
BmgT120I GGNCC 3 cut(s) 269, 323, 424
BmiI GGNNCC 2 cut(s) 426, 439
BmrFI CCNGG 3 cut(s) 64, 327, 476
BmsI GCATC 3 cut(s) 53, 200, 247
BpiI GAAGAC 1 cut(s) 478
Bpu10I CCTNAGC 1 cut(s) 467
BpuEI CTTGAG 1 cut(s) 249
BsaBI GATNNNNATC 2 cut(s) 83, 363
BsaJI CCNNGG 2 cut(s) 62, 63
BsaWI WCCGGW 2 cut(s) 361, 444
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 433, 434
Bse118I RCCGGY 1 cut(s) 336
Bse8I GATNNNNATC 2 cut(s) 83, 363
BseAI TCCGGA 1 cut(s) 361
BseBI CCWGG 3 cut(s) 64, 327, 476
BseDI CCNNGG 2 cut(s) 62, 63
BseGI GGATG 2 cut(s) 44, 454
BseJI GATNNNNATC 2 cut(s) 83, 363
BseLI CCNNNNNNNGG 3 cut(s) 64, 433, 434
BseMII CTCAG 3 cut(s) 89, 89, 458
BseRI GAGGAG 1 cut(s) 252
BseXI GCAGC 2 cut(s) 10, 458
BseYI CCCAGC 2 cut(s) 387, 392
BshFI GGCC 3 cut(s) 270, 325, 493
BsiHKAI GWGCWC 1 cut(s) 401
BsiHKCI CYCGRG 1 cut(s) 433
BsiSI CCGG 4 cut(s) 337, 362, 445, 458
BslFI GGGAC 2 cut(s) 45, 410
BslI CCNNNNNNNGG 3 cut(s) 64, 433, 434
BsmAI GTCTC 1 cut(s) 350
BsmFI GGGAC 2 cut(s) 45, 410
BsnI GGCC 3 cut(s) 270, 325, 493
BsoBI CYCGRG 1 cut(s) 433
Bsp1286I GDGCHC 1 cut(s) 401
Bsp13I TCCGGA 1 cut(s) 361
Bsp143I GATC 3 cut(s) 358, 364, 437
BspACI CCGC 2 cut(s) 105, 108
BspANI GGCC 3 cut(s) 270, 325, 493
BspCNI CTCAG 3 cut(s) 88, 90, 459
BspEI TCCGGA 1 cut(s) 361
BspLI GGNNCC 2 cut(s) 426, 439
BspMAI CTGCAG 1 cut(s) 28
BspPI GGATC 4 cut(s) 353, 372, 432, 445
BsrFI RCCGGY 1 cut(s) 336
BssAI RCCGGY 1 cut(s) 336
BssECI CCNNGG 2 cut(s) 62, 63
BssMI GATC 3 cut(s) 358, 364, 437
Bst2UI CCWGG 3 cut(s) 64, 327, 476
Bst4CI ACNGT 1 cut(s) 380
BstC8I GCNNGC 3 cut(s) 180, 338, 463
BstDEI CTNAG 3 cut(s) 75, 98, 467
BstF5I GGATG 2 cut(s) 44, 454
BstH2I RGCGCY 3 cut(s) 105, 122, 343
BstHHI GCGC 4 cut(s) 104, 121, 342, 387
BstKTI GATC 3 cut(s) 361, 367, 440
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 3 cut(s) 358, 364, 437
BstMWI GCNNNNNNNGC 6 cut(s) 29, 116, 188, 322, 348, 471
BstNI CCWGG 3 cut(s) 64, 327, 476
BstNSI RCATGY 1 cut(s) 485
BstSCI CCNGG 3 cut(s) 62, 325, 474
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 10, 458
BstV2I GAAGAC 1 cut(s) 478
BstX2I RGATCY 3 cut(s) 358, 364, 437
BstYI RGATCY 3 cut(s) 358, 364, 437
BsuRI GGCC 3 cut(s) 270, 325, 493
BtgZI GCGATG 1 cut(s) 70
BtsCI GGATG 2 cut(s) 44, 454
BtsIMutI CAGTG 1 cut(s) 376
Cac8I GCNNGC 3 cut(s) 180, 338, 463
CfoI GCGC 4 cut(s) 104, 121, 342, 387
Cfr10I RCCGGY 1 cut(s) 336
Cfr13I GGNCC 3 cut(s) 269, 323, 424
CviAII CATG 1 cut(s) 482
DdeI CTNAG 3 cut(s) 75, 98, 467
DpnI GATC 3 cut(s) 360, 366, 439
DpnII GATC 3 cut(s) 358, 364, 437
DraI TTTAAA 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 491
Eco47I GGWCC 1 cut(s) 424
Eco88I CYCGRG 1 cut(s) 433
EcoO109I RGGNCCY 2 cut(s) 269, 424
EcoRII CCWGG 3 cut(s) 62, 325, 474
FaeI CATG 1 cut(s) 485
FaiI YATR 2 cut(s) 354, 483
FaqI GGGAC 2 cut(s) 45, 410
FatI CATG 1 cut(s) 481
Fnu4HI GCNGC 4 cut(s) 24, 105, 108, 472
FokI GGATG 2 cut(s) 31, 441
Fsp4HI GCNGC 4 cut(s) 24, 105, 108, 472
FspBI CTAG 2 cut(s) 302, 333
GlaI GCGC 4 cut(s) 103, 120, 341, 386
GluI GCNGC 4 cut(s) 24, 105, 108, 472
GsaI CCCAGC 2 cut(s) 391, 396
HaeII RGCGCY 3 cut(s) 105, 122, 343
HaeIII GGCC 3 cut(s) 270, 325, 493
HapII CCGG 4 cut(s) 337, 362, 445, 458
HhaI GCGC 4 cut(s) 104, 121, 342, 387
Hin1II CATG 1 cut(s) 485
Hin6I GCGC 4 cut(s) 102, 119, 340, 385
HinP1I GCGC 4 cut(s) 102, 119, 340, 385
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HinfI GANTC 3 cut(s) 11, 79, 218
HpaII CCGG 4 cut(s) 337, 362, 445, 458
HphI GGTGA 2 cut(s) 266, 514
Hpy166II GTNNAC 2 cut(s) 406, 516
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 4 cut(s) 139, 209, 362, 435
Hpy8I GTNNAC 2 cut(s) 406, 516
Hpy99I CGWCG 1 cut(s) 499
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 4 cut(s) 26, 160, 191, 481
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 116, 188, 322, 348, 471
HpyF3I CTNAG 3 cut(s) 75, 98, 467
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 1 cut(s) 485
HspAI GCGC 4 cut(s) 102, 119, 340, 385
Kpn2I TCCGGA 1 cut(s) 361
KroI GCCGGC 1 cut(s) 336
KroNI GCCGGC 1 cut(s) 338
Kzo9I GATC 3 cut(s) 358, 364, 437
LmnI GCTCC 6 cut(s) 29, 35, 41, 60, 265, 404
Lsp1109I GCAGC 2 cut(s) 10, 458
LweI GCATC 3 cut(s) 53, 200, 247
MaeI CTAG 2 cut(s) 302, 333
MaeII ACGT 1 cut(s) 147
MalI GATC 3 cut(s) 360, 366, 439
MboI GATC 3 cut(s) 358, 364, 437
MboII GAAGA 4 cut(s) 154, 239, 368, 478
MfeI CAATTG 1 cut(s) 50
MflI RGATCY 3 cut(s) 358, 364, 437
MhlI GDGCHC 1 cut(s) 401
MluCI AATT 2 cut(s) 50, 154
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 1 cut(s) 465
MnlI CCTC 4 cut(s) 84, 273, 282, 513
MroI TCCGGA 1 cut(s) 361
MroNI GCCGGC 1 cut(s) 336
MseI TTAA 3 cut(s) 152, 246, 413
MspI CCGG 4 cut(s) 337, 362, 445, 458
MspR9I CCNGG 3 cut(s) 64, 327, 476
MunI CAATTG 1 cut(s) 50
MvaI CCWGG 3 cut(s) 64, 327, 476
MwoI GCNNNNNNNGC 6 cut(s) 29, 116, 188, 322, 348, 471
NaeI GCCGGC 1 cut(s) 338
NdeII GATC 3 cut(s) 358, 364, 437
NgoMIV GCCGGC 1 cut(s) 336
NlaIII CATG 1 cut(s) 485
NlaIV GGNNCC 2 cut(s) 426, 439
NmeAIII GCCGAG 1 cut(s) 327
NspI RCATGY 1 cut(s) 485
PasI CCCWGGG 1 cut(s) 63
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PdiI GCCGGC 1 cut(s) 338
PfeI GAWTC 2 cut(s) 79, 218
PflFI GACNNNGTC 1 cut(s) 422
PkrI GCNGC 4 cut(s) 25, 106, 109, 473
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PpuMI RGGWCCY 1 cut(s) 424
Psp1406I AACGTT 1 cut(s) 147
Psp5II RGGWCCY 1 cut(s) 424
Psp6I CCWGG 3 cut(s) 62, 325, 474
PspFI CCCAGC 2 cut(s) 387, 392
PspGI CCWGG 3 cut(s) 62, 325, 474
PspN4I GGNNCC 2 cut(s) 426, 439
PspPI GGNCC 3 cut(s) 269, 323, 424
PspPPI RGGWCCY 1 cut(s) 424
PstI CTGCAG 1 cut(s) 28
PsuI RGATCY 3 cut(s) 358, 364, 437
PsyI GACNNNGTC 1 cut(s) 422
SaqAI TTAA 3 cut(s) 152, 246, 413
SatI GCNGC 4 cut(s) 24, 105, 108, 472
Sau3AI GATC 3 cut(s) 358, 364, 437
Sau96I GGNCC 3 cut(s) 269, 323, 424
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 3 cut(s) 64, 327, 476
SduI GDGCHC 1 cut(s) 401
SetI ASST 9 cut(s) 76, 137, 150, 184, 207, 331, 426, 473, 480
SfaNI GCATC 3 cut(s) 53, 200, 247
SfcI CTRYAG 1 cut(s) 24
SinI GGWCC 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
Sse9I AATT 2 cut(s) 50, 154
SsiI CCGC 2 cut(s) 105, 108
SspMI CTAG 2 cut(s) 302, 333
StyD4I CCNGG 3 cut(s) 62, 325, 474
TaaI ACNGT 1 cut(s) 380
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 225
TasI AATT 2 cut(s) 50, 154
TauI GCSGC 2 cut(s) 107, 110
TfiI GAWTC 2 cut(s) 79, 218
Tru1I TTAA 3 cut(s) 152, 246, 413
Tru9I TTAA 3 cut(s) 152, 246, 413
TscAI CASTG 1 cut(s) 383
TseI GCWGC 2 cut(s) 23, 471
TspDTI ATGAA 1 cut(s) 369
TspGWI ACGGA 3 cut(s) 4, 47, 391
TspRI CASTG 1 cut(s) 383
Tth111I GACNNNGTC 1 cut(s) 422
VpaK11BI GGWCC 1 cut(s) 424
XapI RAATTY 1 cut(s) 154
XceI RCATGY 1 cut(s) 485
XspI CTAG 2 cut(s) 302, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.