Rh1CG006900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0014783
Physical Location & Seq
Forward (+)
1068693 .. 1070714
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG006900.1

Sequence Viewer

Length: 375 bp
ATGGAAATGGAGTCCGTATTTGCTGCAGGAGCAGGAGCAGGAGCATCCCAATTGCTCCGTCCCAGGGTCGCACCTCAGATTCCCATCGCTCTCAAACTGAGCGCCGCCGCCGATAAAGCGCCTTTTGGTTTCAGGTTCAAGAAGAACGTTTTAAATTTGCAAATAAGGGAAAGATGGCAAGCTGTGTCTGCATCAAAATCTAACCTTCCAGATGGGGATTCCATCGAAGATAAATCAGGCAGGGTTAAAAGTGGTGATGCTCCTCAAGGCCCTCCTTTCCTTACCATCTTGGCTGGATTTCTAGTCCTTTTACTGGTATTCTGGATTCTTGGATCAATTCTAATGTGGTTGATTAGTTTCTTTGTTCGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.46

Weight (kDa)

10.1

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014783)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00090
malus_domestica MD02G1319200.v1.1 MD07G1001500.v1.1
prunus_persica Prupe.2G003000_v2.0.a1
pyrus_communis pycom02g26740
rosa_chinensis RchiOBHm_Chr1g0313281
rosa_laevigata RLG00000030809
rosa_multiflora Rmu_sc0000035.1_g000003 Rmu_sc0004761.1_g000010
rosa_roxburghii Rroxscaffold_4G00332280
rosa_rugosa RorugPtG0002600.1
rosa_samantha Rh1AG002400 Rh1CG004500 Rh1CG006900 Rh1CG007000 Rh1DG002300
rosa_wichuraiana Rw1G000150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 105, 108
AclI AACGTT 1 cut(s) 147
AclWI GGATC 1 cut(s) 340
AcsI RAATTY 1 cut(s) 154
AfiI CCNNNNNNNGG 2 cut(s) 64, 313
AgsI TTSAA 1 cut(s) 139
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
AlwI GGATC 1 cut(s) 340
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 154
AspLEI GCGC 2 cut(s) 104, 121
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 266
BbvI GCAGC 1 cut(s) 10
BccI CCATC 5 cut(s) 92, 168, 206, 230, 293
BciT130I CCWGG 1 cut(s) 64
BfaI CTAG 2 cut(s) 302, 373
BfmI CTRYAG 1 cut(s) 24
BfoI RGCGCY 2 cut(s) 105, 122
BisI GCNGC 3 cut(s) 24, 105, 108
BlsI GCNGC 3 cut(s) 25, 106, 109
Bme1390I CCNGG 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 64
BmsI GCATC 3 cut(s) 53, 200, 247
BpuEI CTTGAG 1 cut(s) 249
BsaBI GATNNNNATC 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 62, 63
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 313
Bse1I ACTGG 1 cut(s) 318
Bse8I GATNNNNATC 1 cut(s) 83
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 2 cut(s) 62, 63
BseGI GGATG 1 cut(s) 44
BseJI GATNNNNATC 1 cut(s) 83
BseLI CCNNNNNNNGG 2 cut(s) 64, 313
BseMII CTCAG 2 cut(s) 89, 89
BseNI ACTGG 1 cut(s) 318
BseRI GAGGAG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 10
BshFI GGCC 1 cut(s) 270
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 2 cut(s) 64, 313
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 1 cut(s) 270
Bsp143I GATC 1 cut(s) 332
BspACI CCGC 2 cut(s) 105, 108
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 2 cut(s) 88, 90
BspMAI CTGCAG 1 cut(s) 28
BspPI GGATC 1 cut(s) 340
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 2 cut(s) 62, 63
BssMI GATC 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 2 cut(s) 75, 98
BstF5I GGATG 1 cut(s) 44
BstH2I RGCGCY 2 cut(s) 105, 122
BstHHI GCGC 2 cut(s) 104, 121
BstKTI GATC 1 cut(s) 335
BstMBI GATC 1 cut(s) 332
BstMWI GCNNNNNNNGC 3 cut(s) 29, 116, 188
BstNI CCWGG 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 62
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 10
BsuRI GGCC 1 cut(s) 270
BtgZI GCGATG 1 cut(s) 70
BtsCI GGATG 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 180
CfoI GCGC 2 cut(s) 104, 121
Cfr13I GGNCC 1 cut(s) 269
CviJI RGCY 3 cut(s) 182, 270, 293
CviKI_1 RGCY 3 cut(s) 182, 270, 293
DdeI CTNAG 2 cut(s) 75, 98
DpnI GATC 1 cut(s) 334
DpnII GATC 1 cut(s) 332
DraI TTTAAA 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 62
FaqI GGGAC 1 cut(s) 45
Fnu4HI GCNGC 3 cut(s) 24, 105, 108
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 3 cut(s) 24, 105, 108
FspBI CTAG 2 cut(s) 302, 373
GlaI GCGC 2 cut(s) 103, 120
GluI GCNGC 3 cut(s) 24, 105, 108
HaeII RGCGCY 2 cut(s) 105, 122
HaeIII GGCC 1 cut(s) 270
HhaI GCGC 2 cut(s) 104, 121
Hin6I GCGC 2 cut(s) 102, 119
HinP1I GCGC 2 cut(s) 102, 119
HinfI GANTC 4 cut(s) 11, 79, 218, 325
HphI GGTGA 1 cut(s) 266
Hpy188I TCNGA 2 cut(s) 78, 369
Hpy188III TCNNGA 3 cut(s) 139, 209, 322
HpyAV CCTTC 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 3 cut(s) 26, 160, 191
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 116, 188
HpyF3I CTNAG 2 cut(s) 75, 98
HpySE526I ACGT 1 cut(s) 147
HspAI GCGC 2 cut(s) 102, 119
Kzo9I GATC 1 cut(s) 332
LmnI GCTCC 5 cut(s) 29, 35, 41, 60, 265
Lsp1109I GCAGC 1 cut(s) 10
LweI GCATC 3 cut(s) 53, 200, 247
MaeI CTAG 2 cut(s) 302, 373
MaeII ACGT 1 cut(s) 147
MalI GATC 1 cut(s) 334
MboI GATC 1 cut(s) 332
MboII GAAGA 2 cut(s) 154, 239
MfeI CAATTG 1 cut(s) 50
MluCI AATT 3 cut(s) 50, 154, 336
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 3 cut(s) 84, 273, 282
MseI TTAA 2 cut(s) 152, 246
MspR9I CCNGG 1 cut(s) 64
MunI CAATTG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 64
MwoI GCNNNNNNNGC 3 cut(s) 29, 116, 188
NdeII GATC 1 cut(s) 332
PasI CCCWGGG 1 cut(s) 63
PfeI GAWTC 3 cut(s) 79, 218, 325
PkrI GCNGC 3 cut(s) 25, 106, 109
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Psp1406I AACGTT 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspPI GGNCC 1 cut(s) 269
PstI CTGCAG 1 cut(s) 28
SaqAI TTAA 2 cut(s) 152, 246
SatI GCNGC 3 cut(s) 24, 105, 108
Sau3AI GATC 1 cut(s) 332
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 64
SetI ASST 5 cut(s) 76, 137, 150, 184, 207
SfaNI GCATC 3 cut(s) 53, 200, 247
SfcI CTRYAG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
Sse9I AATT 3 cut(s) 50, 154, 336
SsiI CCGC 2 cut(s) 105, 108
SspMI CTAG 2 cut(s) 302, 373
StyD4I CCNGG 1 cut(s) 62
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 225
TasI AATT 3 cut(s) 50, 154, 336
TauI GCSGC 2 cut(s) 107, 110
TfiI GAWTC 3 cut(s) 79, 218, 325
Tru1I TTAA 2 cut(s) 152, 246
Tru9I TTAA 2 cut(s) 152, 246
TseI GCWGC 1 cut(s) 23
TspGWI ACGGA 2 cut(s) 4, 47
XapI RAATTY 1 cut(s) 154
XspI CTAG 2 cut(s) 302, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.