Rh1CG004500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0014783
Physical Location & Seq
Forward (+)
568050 .. 569963
1914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG004500.1

Sequence Viewer

Length: 381 bp
ATGGAAATGGAGTCCGTATTTGCTGCAGGAGCAGGAGCAGGAGCAGGAGCATCCCAATTGCTCCGTCCCAGGGTCGCACCTCAGATTCCCATCGCTCTCAAACTGAGCGCCGCCGCCGATAAAGCGCCTTTTGATTTCAGGTTCAAGAAGAACGTTTTAAATTTGCAAATAAGGGAAAGATGGCAAGCTGTGTCTGCATCAAAATCTAACCTTCCAGATGGGGATTCCATCGAAGATAAATCAGGCAGGGTTAAAAGTGGTGATGCTCCCCAAGGCCCTCCTTTCCTTACCATCTTGGCTGGATTTCTAGTCCTTTTACTGGTGTTCTGGATTCTTGGATCATTTCTAATGTGGTTGATTAGTTTCTTTGTTCGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.68

Weight (kDa)

9.86

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014783)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g00090
malus_domestica MD02G1319200.v1.1 MD07G1001500.v1.1
prunus_persica Prupe.2G003000_v2.0.a1
pyrus_communis pycom02g26740
rosa_chinensis RchiOBHm_Chr1g0313281
rosa_laevigata RLG00000030809
rosa_multiflora Rmu_sc0000035.1_g000003 Rmu_sc0004761.1_g000010
rosa_roxburghii Rroxscaffold_4G00332280
rosa_rugosa RorugPtG0002600.1
rosa_samantha Rh1AG002400 Rh1CG004500 Rh1CG006900 Rh1CG007000 Rh1DG002300
rosa_wichuraiana Rw1G000150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 111, 114
AclI AACGTT 1 cut(s) 153
AclWI GGATC 1 cut(s) 346
AcsI RAATTY 1 cut(s) 160
AfiI CCNNNNNNNGG 2 cut(s) 70, 319
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
AlwI GGATC 1 cut(s) 346
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 160
AspLEI GCGC 2 cut(s) 110, 127
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 272
BbvI GCAGC 1 cut(s) 10
BccI CCATC 5 cut(s) 98, 174, 212, 236, 299
BciT130I CCWGG 1 cut(s) 70
BfaI CTAG 2 cut(s) 308, 379
BfmI CTRYAG 1 cut(s) 24
BfoI RGCGCY 2 cut(s) 111, 128
BisI GCNGC 3 cut(s) 24, 111, 114
BlsI GCNGC 3 cut(s) 25, 112, 115
Bme1390I CCNGG 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 3 cut(s) 59, 206, 253
BsaBI GATNNNNATC 1 cut(s) 89
BsaJI CCNNGG 3 cut(s) 68, 69, 271
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 319
Bse1I ACTGG 1 cut(s) 324
Bse8I GATNNNNATC 1 cut(s) 89
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 3 cut(s) 68, 69, 271
BseGI GGATG 1 cut(s) 50
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 2 cut(s) 70, 319
BseMII CTCAG 2 cut(s) 95, 95
BseNI ACTGG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 10
BshFI GGCC 1 cut(s) 276
BslFI GGGAC 1 cut(s) 51
BslI CCNNNNNNNGG 2 cut(s) 70, 319
BsmFI GGGAC 1 cut(s) 51
BsnI GGCC 1 cut(s) 276
Bsp143I GATC 1 cut(s) 338
BspACI CCGC 2 cut(s) 111, 114
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 2 cut(s) 94, 96
BspMAI CTGCAG 1 cut(s) 28
BspPI GGATC 1 cut(s) 346
BsrI ACTGG 1 cut(s) 324
BssECI CCNNGG 3 cut(s) 68, 69, 271
BssMI GATC 1 cut(s) 338
BssT1I CCWWGG 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 2 cut(s) 81, 104
BstF5I GGATG 1 cut(s) 50
BstH2I RGCGCY 2 cut(s) 111, 128
BstHHI GCGC 2 cut(s) 110, 127
BstKTI GATC 1 cut(s) 341
BstMBI GATC 1 cut(s) 338
BstMWI GCNNNNNNNGC 3 cut(s) 29, 122, 194
BstNI CCWGG 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 10
BsuRI GGCC 1 cut(s) 276
BtgZI GCGATG 1 cut(s) 76
BtsCI GGATG 1 cut(s) 50
Cac8I GCNNGC 1 cut(s) 186
CfoI GCGC 2 cut(s) 110, 127
Cfr13I GGNCC 1 cut(s) 275
CviJI RGCY 3 cut(s) 188, 276, 299
CviKI_1 RGCY 3 cut(s) 188, 276, 299
DdeI CTNAG 2 cut(s) 81, 104
DpnI GATC 1 cut(s) 340
DpnII GATC 1 cut(s) 338
DraI TTTAAA 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 271
EcoO109I RGGNCCY 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 271
FaqI GGGAC 1 cut(s) 51
Fnu4HI GCNGC 3 cut(s) 24, 111, 114
FokI GGATG 1 cut(s) 37
Fsp4HI GCNGC 3 cut(s) 24, 111, 114
FspBI CTAG 2 cut(s) 308, 379
GlaI GCGC 2 cut(s) 109, 126
GluI GCNGC 3 cut(s) 24, 111, 114
HaeII RGCGCY 2 cut(s) 111, 128
HaeIII GGCC 1 cut(s) 276
HhaI GCGC 2 cut(s) 110, 127
Hin6I GCGC 2 cut(s) 108, 125
HinP1I GCGC 2 cut(s) 108, 125
HinfI GANTC 4 cut(s) 11, 85, 224, 331
HphI GGTGA 1 cut(s) 272
Hpy188I TCNGA 2 cut(s) 84, 375
Hpy188III TCNNGA 3 cut(s) 145, 215, 328
HpyAV CCTTC 1 cut(s) 221
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 3 cut(s) 26, 166, 197
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 122, 194
HpyF3I CTNAG 2 cut(s) 81, 104
HpySE526I ACGT 1 cut(s) 153
HspAI GCGC 2 cut(s) 108, 125
Kzo9I GATC 1 cut(s) 338
LmnI GCTCC 6 cut(s) 29, 35, 41, 47, 66, 271
Lsp1109I GCAGC 1 cut(s) 10
LweI GCATC 3 cut(s) 59, 206, 253
MaeI CTAG 2 cut(s) 308, 379
MaeII ACGT 1 cut(s) 153
MalI GATC 1 cut(s) 340
MboI GATC 1 cut(s) 338
MboII GAAGA 2 cut(s) 160, 245
MfeI CAATTG 1 cut(s) 56
MluCI AATT 2 cut(s) 56, 160
MlyI GAGTC 1 cut(s) 20
MnlI CCTC 2 cut(s) 90, 288
MseI TTAA 2 cut(s) 158, 252
MspR9I CCNGG 1 cut(s) 70
MunI CAATTG 1 cut(s) 56
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 3 cut(s) 29, 122, 194
NdeII GATC 1 cut(s) 338
PasI CCCWGGG 1 cut(s) 69
PfeI GAWTC 3 cut(s) 85, 224, 331
PkrI GCNGC 3 cut(s) 25, 112, 115
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Psp1406I AACGTT 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspPI GGNCC 1 cut(s) 275
PstI CTGCAG 1 cut(s) 28
SaqAI TTAA 2 cut(s) 158, 252
SatI GCNGC 3 cut(s) 24, 111, 114
Sau3AI GATC 1 cut(s) 338
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 70
SetI ASST 5 cut(s) 82, 143, 156, 190, 213
SfaNI GCATC 3 cut(s) 59, 206, 253
SfcI CTRYAG 1 cut(s) 24
Sse9I AATT 2 cut(s) 56, 160
SsiI CCGC 2 cut(s) 111, 114
SspMI CTAG 2 cut(s) 308, 379
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 271
TaiI ACGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 231
TasI AATT 2 cut(s) 56, 160
TauI GCSGC 2 cut(s) 113, 116
TfiI GAWTC 3 cut(s) 85, 224, 331
Tru1I TTAA 2 cut(s) 158, 252
Tru9I TTAA 2 cut(s) 158, 252
TseI GCWGC 1 cut(s) 23
TspGWI ACGGA 2 cut(s) 4, 53
XapI RAATTY 1 cut(s) 160
XspI CTAG 2 cut(s) 308, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.