FvH4_7g01510

Pentatricopeptide repeat-containing protein At3g46790

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005788
Physical Location & Seq
Forward (+)
1916414 .. 1921485
5072 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g01510.t1

Sequence Viewer

Length: 2715 bp
ATGGCTGCTCTGGCCCACGCCCTGCTCGGAATCCCAGCTCGGTGTGGTCTCTGCCGTGCCATCCATCCCCACCTCTCCTCCGCTTCTCGCTCTTCTCCAATCTCCCCCATTTCTAGGTCTCTGCGAGTCGCTAATCTCACCGCTCCTCGGTCCAGGCTCAACGCCGTCAACACCGTCACCGTCCACAGCGCTCCGGCTCCCGTCACCGTTGAAATCCCCGTCACCTGTTACCAGCTCATTGGCGTTCCTGATCGAGCTGAGAAAGATGAGGTTATTAAAGCAGTAATGGATTTGAAGATTTCTCAAGTCGAAGAAGGTTACACTGAGAATGCTATTAAATCTCGGCAGGATTTCTTAATGGATGTGAGGGATAAGCTTGTTTCTGAACCAGAATATGCTGGTAATAGTAATGAAAATATCCGACCTAAATCTGCTCTTCAAATCCCTTGGGCATGGTTTGGAGCTACTCTTTGCCTCCTTCAAGAGGTTGGTGAAGTAGAGCTTGTGCTAGATATTGGTCAAGCAGCTCTTCAGCATCCAGAAGCTAAGCCATATATTCATGATATTCTTCTTTCTATGGCACTGGCTGAGTGTGCAACTGCAGTGATTGGTTTTGAGAAGAACAAAATATCCCAGGGGTTTGAAGCTATTGCTCGTGCTCAGAGTCTTCTTAGAAGTAAAAAATCTCTTGAGAAAACACCATTATTATCTAAGATTGATAGAGCTAAAACTAAGTGTGAGTGTCTGATTGCGTCAGAGCTTACTGGTCTGAAACTAGAGGAAGCTCTTACGATGTTTCTTCTTGGTAAGGATAATGAGGCCGCAGTTGTTGAAAAGCTGCAGAGGGTTGATGGAAACAAAAACCAATTAATACAGTCTTTATGCAATCAAGGTGACCTGAAGCTAGCTCTACAACTTTTTCCTCACGAACCCAACCCCTCCCAACAGACCTGTGAGCTCTTAATCCTTTCTTGCATCCGCCAGGATTCTCTCCCTGATGGGTTAGATGTGCATCGCCACCTTGTTAATGGCGGGTGGGACCAAGACCCTTTTTTGGCTACCAAACTTATAGAGATGTACTCTGAGTTGGACTCCATCGAGAATGCACGTGAGGTGTTTGATAAAACTCACAAGAGAACTATTTATATGTGGAATGCACTTTTTAGGGCCCTTACGTTGGCTGGCCATGGAACTGAAGTGTTAAATTTGTACAGACAAATGAATGCAATTGGAGTTCCGTCTGATCGGTTTACGTATACGTATGTACTCAAAGCTTGTGTTGTTTCAGAGTGTTCAAGTTCGCTCCTCCAGAAGGGAAAGGAGATTCATGGGCATATTTTGCGTCACGGATATGGGGCCCATGTTCATGTAACAACTACTTTGTTGGATATGTATGCAAGGTTCGGGTGTGTTTCATATGCTAGTAGTGTCTTTGATCAGATGCAAAATAGAAATGTGGTTTCTTGGAGTGCTATGATTGCATGCTATGCAAAGAATGCGAGGCCTTATGAAGCTTGGGAACTTTTTCGGAAAATGATACTGGAGGCCCCTGATATGTTTCCCAACTCCGTGACCATGGTTAGTGTTCTTCAGGCTTGTGCAGCTCTTGCTGCCTTAGAGCAGGGGAAGTTCATTCATGGGTACATCCTGAGAAGGGGTCTTGATTCAACCCTTCCAGTTATGAGTAGCCTTATCACAATGTACGCAAGGTGTGGTAAGCTTGAGTTGGCCCAACAAGTTTTCAATAAGATCAAAAGGAAGGATGTTGTTTCATGGAATTCCTTGATTTCAAGTTATGGGATTCATGGATATGGAAAGAGGGCCATTCAAGTTTTTGAAGACATGATTGATCATGGTGTATCACCGAGTTACATTTCATTTGTTAGTGTTTTGGGGGCTTGTAGTCATGAAGGTCTTGTTGAAGAGGGGAAGGTAATATTCCAGTCTATGGTGAGAGAGCATGGATTATATCCCAGCATTGAGCAGTATGCTTGTATGGTGGACCTTCTTGGTCGTGCTAATCGGTTAGATGAAGCAGCCAAAATCATTGATAATATGCGGATTGAACCAGGAGCTCAAGTTTGGGGTGCTCTTCTTGGATCATGTAGGATTCATGGTAATGTTGAGCTGGCAGAGAGAGCAAGCAAAAGGTTATTTGAGCTTGAGCCTAGGAATGCTGGGAATTATGTACTTCTAGCTGATATTTATGCCGAGGCCAAGATGTGGGACGAGGTAAAAAGAGTAAAAAGACTTCTAGAAGATCGGGAACTTCAAAAGGTACCGGGTCGCAGTTGGATGGAAGTTAATAGGAAGATATACTCATTTGATTCTGTTGACGAGTTTAACCCTCAAATGGAACAACTTCATGCACTGCTAGGTGAATTGTCAATGGAGATGAAAGGACGAGGATATAAGCCACAGACTAAAGTTGTCCTGTATGATCTTGACGAGGAAGAGAAGGAACGAATAGTATTAGGCCATAGTGAAAAGTTAGCAGTTGCATTTGGTCTTATCAATACCAAACCTGGGGAAATTATTCGGATTTCCAAGAATTTGAGGCTGTGTGAAGATTGCCATTATGTTACGAAATTTATATCGAGGTTTACCAATAGAGAGATTCTAGTCCGAGATGTGAATCGGTTTCACCATTTCCGTGACGGCATTTGTTCATGCGGGGATTATTGGTGGGTGCAAACTGGGATGAAGTTCCTTTAA

Protein Analysis

905

Amino Acids

101.59

Weight (kDa)

6.97

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arm_PDR PF25515 147 - 241 4.1e-24 Plastid division regulator ARM repeat
PPR_2 PF13041 380 - 426 6.1e-06 PPR repeat family
PPR_2 PF13041 484 - 534 1.1e-06 PPR repeat family
PPR_2 PF13041 587 - 635 4.2e-09 PPR repeat family
PPR PF01535 590 - 620 6.1e-07 PPR repeat
E_motif PF20431 705 - 767 5.9e-19 E motif
DYW_deaminase PF14432 803 - 895 8.9e-42 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 2278
AccB1I GGYRCC 1 cut(s) 2278
AccB7I CCANNNNNTGG 2 cut(s) 1948, 2223
AccBSI CCGCTC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 1256
AciI CCGC 7 cut(s) 81, 141, 822, 979, 1032, 2059, 2673
AclWI GGATC 1 cut(s) 2107
AcoI YGGCCR 1 cut(s) 1183
AcsI RAATTY 4 cut(s) 1204, 1777, 2551, 2588
AcuI CTGAAG 4 cut(s) 515, 920, 1215, 1574
AcvI CACGTG 1 cut(s) 1109
AfaI GTAC 7 cut(s) 1079, 1211, 1266, 1643, 1703, 2190, 2280
AfeI AGCGCT 1 cut(s) 190
AjnI CCWGG 5 cut(s) 152, 633, 981, 2068, 2524
AloI GAACNNNNNNTCC 2 cut(s) 614, 646
Alw21I GWGCWC 4 cut(s) 661, 960, 2077, 2092
Alw26I GTCTC 2 cut(s) 53, 123
AlwI GGATC 1 cut(s) 2107
Aor51HI AGCGCT 1 cut(s) 190
ApaI GGGCCC 2 cut(s) 1171, 1360
ApeKI GCWGC 6 cut(s) 5, 524, 838, 1601, 1610, 2036
ApoI RAATTY 4 cut(s) 1204, 1777, 2551, 2588
AseI ATTAAT 1 cut(s) 869
Asp700I GAANNNNTTC 3 cut(s) 1524, 2361, 2535
Asp718I GGTACC 1 cut(s) 2278
AspA2I CCTAGG 1 cut(s) 2168
AspLEI GCGC 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 2283
AsuNHI GCTAGC 1 cut(s) 904
AvaII GGWCC 3 cut(s) 150, 1039, 2002
AvrII CCTAGG 1 cut(s) 2168
BaeGI GKGCMC 2 cut(s) 1171, 1360
BalI TGGCCA 1 cut(s) 1185
BanI GGYRCC 1 cut(s) 2278
BanII GRGCYC 4 cut(s) 960, 1171, 1360, 2077
BarI GAAGNNNNNNTAC 2 cut(s) 2235, 2267
BauI CACGAG 1 cut(s) 654
BbrPI CACGTG 1 cut(s) 1109
BbsI GAAGAC 2 cut(s) 659, 1845
Bbv12I GWGCWC 4 cut(s) 661, 960, 2077, 2092
BbvI GCAGC 5 cut(s) 536, 825, 1597, 1613, 2048
BccI CCATC 6 cut(s) 68, 72, 845, 992, 1103, 2290
BceAI ACGGC 3 cut(s) 39, 149, 2674
BciT130I CCWGG 5 cut(s) 154, 635, 983, 2070, 2526
BclI TGATCA 2 cut(s) 1435, 1849
BcnI CCSGG 1 cut(s) 2283
BcoDI GTCTC 2 cut(s) 53, 123
BfmI CTRYAG 2 cut(s) 600, 839
BfoI RGCGCY 1 cut(s) 192
BisI GCNGC 7 cut(s) 6, 525, 822, 839, 1602, 1611, 2037
BlnI CCTAGG 1 cut(s) 2168
BlpI GCTNAGC 1 cut(s) 546
BlsI GCNGC 7 cut(s) 7, 526, 823, 840, 1603, 1612, 2038
Bme1390I CCNGG 6 cut(s) 154, 635, 983, 2070, 2283, 2526
Bme18I GGWCC 3 cut(s) 150, 1039, 2002
BmiI GGNNCC 7 cut(s) 198, 1040, 1169, 1357, 1358, 1548, 2280
BmrFI CCNGG 6 cut(s) 154, 635, 983, 2070, 2283, 2526
BmrI ACTGGG 1 cut(s) 2706
BmsI GCATC 4 cut(s) 544, 984, 1021, 1431
BmtI GCTAGC 1 cut(s) 908
BmuI ACTGGG 1 cut(s) 2706
BpiI GAAGAC 2 cut(s) 659, 1845
BplI GAGNNNNNCTC 4 cut(s) 1064, 1096, 1076, 1108
BpmI CTGGAG 2 cut(s) 1292, 1562
Bpu1102I GCTNAGC 1 cut(s) 546
BpuEI CTTGAG 5 cut(s) 288, 710, 1742, 2061, 2183
BpuMI CCSGG 1 cut(s) 2283
BsaAI YACGTR 3 cut(s) 1109, 1254, 1260
BsaBI GATNNNNATC 2 cut(s) 1011, 2634
BsaI GGTCTC 2 cut(s) 53, 123
BsaJI CCNNGG 9 cut(s) 146, 446, 633, 634, 1186, 1575, 2168, 2211, 2525
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 2064, 2094
Bse1I ACTGG 6 cut(s) 588, 769, 1545, 1676, 1942, 2701
Bse8I GATNNNNATC 2 cut(s) 1011, 2634
BseBI CCWGG 5 cut(s) 154, 635, 983, 2070, 2526
BseDI CCNNGG 9 cut(s) 146, 446, 633, 634, 1186, 1575, 2168, 2211, 2525
BseGI GGATG 9 cut(s) 60, 64, 367, 535, 975, 1644, 1768, 2301, 2706
BseJI GATNNNNATC 2 cut(s) 1011, 2634
BseMII CTCAG 6 cut(s) 249, 315, 579, 674, 1074, 1640
BseNI ACTGG 6 cut(s) 588, 769, 1545, 1676, 1942, 2701
BseRI GAGGAG 3 cut(s) 67, 135, 1295
BseSI GKGCMC 2 cut(s) 1171, 1360
BseXI GCAGC 5 cut(s) 536, 825, 1597, 1613, 2048
BseYI CCCAGC 3 cut(s) 34, 1973, 2177
BsgI GTGCAG 1 cut(s) 1620
BshNI GGYRCC 1 cut(s) 2278
BsiHKAI GWGCWC 4 cut(s) 661, 960, 2077, 2092
BsiSI CCGG 2 cut(s) 194, 2282
BslFI GGGAC 2 cut(s) 1052, 2240
BsmAI GTCTC 2 cut(s) 53, 123
BsmFI GGGAC 2 cut(s) 1052, 2240
BsmI GAATGC 6 cut(s) 334, 1108, 1159, 1228, 1501, 2179
Bso31I GGTCTC 2 cut(s) 53, 123
Bsp120I GGGCCC 2 cut(s) 1167, 1356
Bsp1286I GDGCHC 6 cut(s) 661, 960, 1171, 1360, 2077, 2092
Bsp1407I TGTACA 1 cut(s) 1209
Bsp143I GATC 8 cut(s) 250, 1243, 1435, 1749, 1849, 2099, 2260, 2440
Bsp1720I GCTNAGC 1 cut(s) 546
Bsp19I CCATGG 2 cut(s) 1186, 1575
BspACI CCGC 7 cut(s) 81, 141, 822, 979, 1032, 2059, 2673
BspCNI CTCAG 6 cut(s) 250, 316, 580, 673, 1075, 1641
BspHI TCATGA 2 cut(s) 559, 1906
BspLI GGNNCC 7 cut(s) 198, 1040, 1169, 1357, 1358, 1548, 2280
BspMAI CTGCAG 2 cut(s) 604, 843
BspOI GCTAGC 1 cut(s) 908
BspPI GGATC 1 cut(s) 2107
BspQI GCTCTTC 4 cut(s) 97, 441, 534, 2097
BspT107I GGYRCC 1 cut(s) 2278
BspTNI GGTCTC 2 cut(s) 53, 123
BsrBI CCGCTC 1 cut(s) 143
BsrGI TGTACA 1 cut(s) 1209
BsrI ACTGG 6 cut(s) 588, 769, 1545, 1676, 1942, 2701
BssECI CCNNGG 9 cut(s) 146, 446, 633, 634, 1186, 1575, 2168, 2211, 2525
BssMI GATC 8 cut(s) 250, 1243, 1435, 1749, 1849, 2099, 2260, 2440
BssNAI GTATAC 1 cut(s) 1257
BssSI CACGAG 1 cut(s) 654
BssT1I CCWWGG 4 cut(s) 446, 1186, 1575, 2168
Bst1107I GTATAC 1 cut(s) 1257
Bst2BI CACGAG 1 cut(s) 654
Bst2UI CCWGG 5 cut(s) 154, 635, 983, 2070, 2526
Bst4CI ACNGT 4 cut(s) 175, 181, 208, 876
Bst6I CTCTTC 6 cut(s) 97, 441, 534, 1917, 2097, 2448
BstAPI GCANNNNNTGC 4 cut(s) 1339, 1487, 1496, 1607
BstAUI TGTACA 1 cut(s) 1209
BstBAI YACGTR 3 cut(s) 1109, 1254, 1260
BstC8I GCNNGC 5 cut(s) 906, 1183, 1483, 2130, 2143
BstDSI CCRYGG 2 cut(s) 1186, 1575
BstEII GGTNACC 1 cut(s) 893
BstENI CCTNNNNNAGG 2 cut(s) 482, 1310
BstF5I GGATG 9 cut(s) 60, 64, 367, 535, 975, 1644, 1768, 2301, 2706
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 1 cut(s) 191
BstKTI GATC 8 cut(s) 253, 1246, 1438, 1752, 1852, 2102, 2263, 2443
BstMAI GTCTC 2 cut(s) 53, 123
BstMBI GATC 8 cut(s) 250, 1243, 1435, 1749, 1849, 2099, 2260, 2440
BstNI CCWGG 5 cut(s) 154, 635, 983, 2070, 2526
BstNSI RCATGY 1 cut(s) 1485
BstPI GGTNACC 1 cut(s) 893
BstSCI CCNGG 6 cut(s) 152, 633, 981, 2068, 2281, 2524
BstSFI CTRYAG 2 cut(s) 600, 839
BstSLI GKGCMC 2 cut(s) 1171, 1360
BstSNI TACGTA 2 cut(s) 1254, 1260
BstV1I GCAGC 5 cut(s) 536, 825, 1597, 1613, 2048
BstV2I GAAGAC 2 cut(s) 659, 1845
BstXI CCANNNNNNTGG 1 cut(s) 239
BstZ17I GTATAC 1 cut(s) 1257
BtgI CCRYGG 2 cut(s) 1186, 1575
BtgZI GCGATG 1 cut(s) 998
BtsCI GGATG 9 cut(s) 60, 64, 367, 535, 975, 1644, 1768, 2301, 2706
BtsI GCAGTG 2 cut(s) 609, 2369
BtsIMutI CAGTG 4 cut(s) 321, 581, 609, 2369
Cac8I GCNNGC 5 cut(s) 906, 1183, 1483, 2130, 2143
CciI TCATGA 2 cut(s) 559, 1906
CfoI GCGC 1 cut(s) 191
CseI GACGC 2 cut(s) 741, 1331
Csp6I GTAC 7 cut(s) 1078, 1210, 1265, 1642, 1702, 2189, 2279
CviQI GTAC 7 cut(s) 1078, 1210, 1265, 1642, 1702, 2189, 2279
DpnI GATC 8 cut(s) 252, 1245, 1437, 1751, 1851, 2101, 2262, 2442
DpnII GATC 8 cut(s) 250, 1243, 1435, 1749, 1849, 2099, 2260, 2440
EaeI YGGCCR 1 cut(s) 1183
Eam1104I CTCTTC 6 cut(s) 97, 441, 534, 1917, 2097, 2448
EarI CTCTTC 6 cut(s) 97, 441, 534, 1917, 2097, 2448
EciI GGCGGA 1 cut(s) 968
Ecl136II GAGCTC 2 cut(s) 958, 2075
Eco105I TACGTA 2 cut(s) 1254, 1260
Eco130I CCWWGG 4 cut(s) 446, 1186, 1575, 2168
Eco147I AGGCCT 1 cut(s) 1504
Eco24I GRGCYC 4 cut(s) 960, 1171, 1360, 2077
Eco31I GGTCTC 2 cut(s) 53, 123
Eco47I GGWCC 3 cut(s) 150, 1039, 2002
Eco47III AGCGCT 1 cut(s) 190
Eco53kI GAGCTC 2 cut(s) 958, 2075
Eco57I CTGAAG 4 cut(s) 515, 920, 1215, 1574
Eco72I CACGTG 1 cut(s) 1109
Eco91I GGTNACC 1 cut(s) 893
EcoICRI GAGCTC 2 cut(s) 958, 2075
EcoNI CCTNNNNNAGG 2 cut(s) 482, 1310
EcoO109I RGGNCCY 4 cut(s) 1167, 1168, 1356, 1546
EcoO65I GGTNACC 1 cut(s) 893
EcoRI GAATTC 1 cut(s) 1777
EcoRII CCWGG 5 cut(s) 152, 633, 981, 2068, 2524
EcoT14I CCWWGG 4 cut(s) 446, 1186, 1575, 2168
EcoT38I GRGCYC 4 cut(s) 960, 1171, 1360, 2077
ErhI CCWWGG 4 cut(s) 446, 1186, 1575, 2168
FalI AAGNNNNNCTT 4 cut(s) 486, 518, 513, 545
FaqI GGGAC 2 cut(s) 1052, 2240
FauI CCCGC 2 cut(s) 1025, 2666
FauNDI CATATG 1 cut(s) 1417
FbaI TGATCA 2 cut(s) 1435, 1849
FblI GTMKAC 1 cut(s) 1256
Fnu4HI GCNGC 7 cut(s) 6, 525, 822, 839, 1602, 1611, 2037
FokI GGATG 8 cut(s) 47, 51, 374, 522, 962, 1631, 1775, 2308
FriOI GRGCYC 4 cut(s) 960, 1171, 1360, 2077
Fsp4HI GCNGC 7 cut(s) 6, 525, 822, 839, 1602, 1611, 2037
GlaI GCGC 1 cut(s) 190
GluI GCNGC 7 cut(s) 6, 525, 822, 839, 1602, 1611, 2037
GsaI CCCAGC 3 cut(s) 38, 1977, 2181
GsuI CTGGAG 2 cut(s) 1292, 1562
HaeII RGCGCY 1 cut(s) 192
HapII CCGG 2 cut(s) 194, 2282
HgaI GACGC 2 cut(s) 741, 1331
HhaI GCGC 1 cut(s) 191
Hin6I GCGC 1 cut(s) 189
HinP1I GCGC 1 cut(s) 189
HincII GTYRAC 2 cut(s) 169, 2335
HindII GTYRAC 2 cut(s) 169, 2335
HindIII AAGCTT 4 cut(s) 374, 1272, 1512, 1718
HpaII CCGG 2 cut(s) 194, 2282
Hpy166II GTNNAC 7 cut(s) 169, 184, 1251, 1257, 2002, 2335, 2604
Hpy8I GTNNAC 7 cut(s) 169, 184, 1251, 1257, 2002, 2335, 2604
HpyCH4III ACNGT 4 cut(s) 175, 181, 208, 876
HpyCH4IV ACGT 4 cut(s) 1108, 1175, 1253, 1259
HpySE526I ACGT 4 cut(s) 1108, 1175, 1253, 1259
HspAI GCGC 1 cut(s) 189
KpnI GGTACC 1 cut(s) 2282
Ksp22I TGATCA 2 cut(s) 1435, 1849
Kzo9I GATC 8 cut(s) 250, 1243, 1435, 1749, 1849, 2099, 2260, 2440
LguI GCTCTTC 4 cut(s) 97, 441, 534, 2097
LmnI GCTCC 6 cut(s) 148, 196, 202, 461, 1308, 2072
Lsp1109I GCAGC 5 cut(s) 536, 825, 1597, 1613, 2048
LweI GCATC 4 cut(s) 544, 984, 1021, 1431
MaeII ACGT 4 cut(s) 1108, 1175, 1253, 1259
MalI GATC 8 cut(s) 252, 1245, 1437, 1751, 1851, 2101, 2262, 2442
MbiI CCGCTC 1 cut(s) 143
MboI GATC 8 cut(s) 250, 1243, 1435, 1749, 1849, 2099, 2260, 2440
MfeI CAATTG 1 cut(s) 1227
MhlI GDGCHC 6 cut(s) 661, 960, 1171, 1360, 2077, 2092
MlsI TGGCCA 1 cut(s) 1185
MluCI AATT 9 cut(s) 866, 1204, 1227, 1777, 2182, 2381, 2532, 2551, 2588
MluNI TGGCCA 1 cut(s) 1185
MlyI GAGTC 3 cut(s) 135, 673, 1085
MmeI TCCRAC 4 cut(s) 445, 1068, 1365, 2273
Mox20I TGGCCA 1 cut(s) 1185
MroXI GAANNNNTTC 3 cut(s) 1524, 2361, 2535
MscI TGGCCA 1 cut(s) 1185
MslI CAYNNNNRTG 5 cut(s) 1350, 1365, 1809, 2118, 2652
Msp20I TGGCCA 1 cut(s) 1185
MspI CCGG 2 cut(s) 194, 2282
MspR9I CCNGG 6 cut(s) 154, 635, 983, 2070, 2283, 2526
MunI CAATTG 1 cut(s) 1227
Mva1269I GAATGC 6 cut(s) 334, 1108, 1159, 1228, 1501, 2179
MvaI CCWGG 5 cut(s) 154, 635, 983, 2070, 2526
NciI CCSGG 1 cut(s) 2283
NcoI CCATGG 2 cut(s) 1186, 1575
NdeI CATATG 1 cut(s) 1417
NdeII GATC 8 cut(s) 250, 1243, 1435, 1749, 1849, 2099, 2260, 2440
NheI GCTAGC 1 cut(s) 904
NlaIV GGNNCC 7 cut(s) 198, 1040, 1169, 1357, 1358, 1548, 2280
NmeAIII GCCGAG 2 cut(s) 322, 2236
NmuCI GTSAC 7 cut(s) 175, 202, 220, 893, 1343, 1570, 2654
NspI RCATGY 1 cut(s) 1485
PaeI GCATGC 1 cut(s) 1485
PagI TCATGA 2 cut(s) 559, 1906
PasI CCCWGGG 1 cut(s) 634
PceI AGGCCT 1 cut(s) 1504
PciSI GCTCTTC 4 cut(s) 97, 441, 534, 2097
PctI GAATGC 6 cut(s) 334, 1108, 1159, 1228, 1501, 2179
PdmI GAANNNNTTC 3 cut(s) 1524, 2361, 2535
PfeI GAWTC 9 cut(s) 30, 986, 1324, 1664, 1801, 2110, 2327, 2617, 2635
PflMI CCANNNNNTGG 2 cut(s) 1948, 2223
PkrI GCNGC 7 cut(s) 7, 526, 823, 840, 1603, 1612, 2038
PleI GAGTC 3 cut(s) 134, 672, 1085
PmaCI CACGTG 1 cut(s) 1109
PmlI CACGTG 1 cut(s) 1109
PpsI GAGTC 3 cut(s) 134, 672, 1085
Ppu21I YACGTR 3 cut(s) 1109, 1254, 1260
PshBI ATTAAT 1 cut(s) 869
Psp124BI GAGCTC 2 cut(s) 960, 2077
Psp6I CCWGG 5 cut(s) 152, 633, 981, 2068, 2524
PspCI CACGTG 1 cut(s) 1109
PspEI GGTNACC 1 cut(s) 893
PspFI CCCAGC 3 cut(s) 34, 1973, 2177
PspGI CCWGG 5 cut(s) 152, 633, 981, 2068, 2524
PspN4I GGNNCC 7 cut(s) 198, 1040, 1169, 1357, 1358, 1548, 2280
PspOMI GGGCCC 2 cut(s) 1167, 1356
PsrI GAACNNNNNNTAC 2 cut(s) 1385, 1417
PstI CTGCAG 2 cut(s) 604, 843
RsaI GTAC 7 cut(s) 1079, 1211, 1266, 1643, 1703, 2190, 2280
RsaNI GTAC 7 cut(s) 1078, 1210, 1265, 1642, 1702, 2189, 2279
RseI CAYNNNNRTG 5 cut(s) 1350, 1365, 1809, 2118, 2652
SacI GAGCTC 2 cut(s) 960, 2077
SapI GCTCTTC 4 cut(s) 97, 441, 534, 2097
SatI GCNGC 7 cut(s) 6, 525, 822, 839, 1602, 1611, 2037
Sau3AI GATC 8 cut(s) 250, 1243, 1435, 1749, 1849, 2099, 2260, 2440
SchI GAGTC 3 cut(s) 135, 673, 1085
ScrFI CCNGG 6 cut(s) 154, 635, 983, 2070, 2283, 2526
SduI GDGCHC 6 cut(s) 661, 960, 1171, 1360, 2077, 2092
SfaNI GCATC 4 cut(s) 544, 984, 1021, 1431
SfcI CTRYAG 2 cut(s) 600, 839
SinI GGWCC 3 cut(s) 150, 1039, 2002
SmiMI CAYNNNNRTG 5 cut(s) 1350, 1365, 1809, 2118, 2652
SmlI CTYRAG 5 cut(s) 303, 689, 1721, 2076, 2162
SmoI CTYRAG 5 cut(s) 303, 689, 1721, 2076, 2162
SnaBI TACGTA 2 cut(s) 1254, 1260
SphI GCATGC 1 cut(s) 1485
Sse9I AATT 9 cut(s) 866, 1204, 1227, 1777, 2182, 2381, 2532, 2551, 2588
SseBI AGGCCT 1 cut(s) 1504
SsiI CCGC 7 cut(s) 81, 141, 822, 979, 1032, 2059, 2673
SspI AATATT 1 cut(s) 1938
SstI GAGCTC 2 cut(s) 960, 2077
StuI AGGCCT 1 cut(s) 1504
StyD4I CCNGG 6 cut(s) 152, 633, 981, 2068, 2281, 2524
StyI CCWWGG 4 cut(s) 446, 1186, 1575, 2168
TaaI ACNGT 4 cut(s) 175, 181, 208, 876
TaiI ACGT 4 cut(s) 1111, 1178, 1256, 1262
TaqI TCGA 4 cut(s) 253, 309, 1098, 2597
TaqII GACCGA 1 cut(s) 138
TasI AATT 9 cut(s) 866, 1204, 1227, 1777, 2182, 2381, 2532, 2551, 2588
TatI WGTACW 4 cut(s) 1077, 1209, 1264, 2188
TauI GCSGC 1 cut(s) 824
TfiI GAWTC 9 cut(s) 30, 986, 1324, 1664, 1801, 2110, 2327, 2617, 2635
TscAI CASTG 4 cut(s) 328, 588, 609, 2376
TseFI GTSAC 7 cut(s) 175, 202, 220, 893, 1343, 1570, 2654
TseI GCWGC 6 cut(s) 5, 524, 838, 1601, 1610, 2036
Tsp45I GTSAC 7 cut(s) 175, 202, 220, 893, 1343, 1570, 2654
TspGWI ACGGA 4 cut(s) 1227, 1362, 1558, 2642
TspRI CASTG 4 cut(s) 328, 588, 609, 2376
Van91I CCANNNNNTGG 2 cut(s) 1948, 2223
VpaK11BI GGWCC 3 cut(s) 150, 1039, 2002
VspI ATTAAT 1 cut(s) 869
XagI CCTNNNNNAGG 2 cut(s) 482, 1310
XapI RAATTY 4 cut(s) 1204, 1777, 2551, 2588
XbaI TCTAGA 1 cut(s) 2254
XceI RCATGY 1 cut(s) 1485
XcmI CCANNNNNNNNNTGG 1 cut(s) 1025
XmaJI CCTAGG 1 cut(s) 2168
XmiI GTMKAC 1 cut(s) 1256
XmnI GAANNNNTTC 3 cut(s) 1524, 2361, 2535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.