Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005788

Physical Location & Seq

Genomic Coordinates Forward (+)

3372431 .. 3376952

Gene Structure 4522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G001930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2403 bp

ATGGATTTGAAGAATTCTGAAGTTGAAGAGGGTTATACTGAGAATGCTATTAAATCTCGGCAGGATCTCTTAATGGATGTGAGAGATAGGCTTATTTTTGAACCAGAATGTGCTGGTAATAGTAATGAAAATACCCGACCTAAATCTGCTCTTCAAATCCCTTGGGCATGGTTGGCAGCTGCTCTTTGCCTCCTTCAGGAGGTTAGGGAAGTAGAGCTTGTGCTAGATATTGGTCAAGCAGCTATTAAGCATCCAGATGCGAAGCCATATATTCATGATATTCTTCTTTCTATGGCACTGGCTGAGTGTGCAACTGCAATGATTGGTTTTGAGAGGAACAAAGTGTCCCAGGGATTTGAAGCTATTGCTCGTGCTCAGAGTCTTCTAAGAAGTAAAAAATCTCTTGAGAAAATATCATTATTATCTAAGATTGACAGAGCTAAAACTTTGTGTGAGTGTCTGATTGCATCAGAGCTTACTGATCTGAAACTAGAGGAAGCTCTTACGCTGTTTCTTCTCGGTAAGGATAATGAGGCTGCAGTTGTTGGAAAGCTGAAGAAGCTTGATGGAAGCAAAAACCAATTAATACAGTCTTTATGCAAACAAGGTGACCTCAAGCTAGCTCAACAACTTTTTCCTCATGAACCCAACCCCTCCCAACAGACCTGTGAGCTCTTAATCCTTTCTTGCATCCGCCAGGATTCTCTCTCTGATGGGTTAGACGTGCATAGCCACCTTGTTGATGGCGGGTGGGACCAAGACCCTTTTTTGGCCACCAAACTTATAGAGATGTACTCTGAGTTGGACTCCATCGAGAATGCACGTGAAGTATTCGATAAAACTCGTAAAAGAACTATTTATATGTGGAATGCACTTTTTAGAGCCCTTACGTTGGCTGGCCATGGAACTGAGGTGCTAAATTTGTACAGACAAATGAATACAATTGGGGTTTCGTCTGATCGGTTTACGTATACGTATGTACTCAAAGCTTGTGTTGTTTCAGAGATTTTGAGTTCGCTTCTCCAGAAGGGAAAGGAGATTCATGGGCATATTTTGCGTCACGGATATGGGGCCCATGTTCATGTAACGACCACTTTGTTGGATATGTATGCAAGGTTCGGGTGCGTTTCATGTGCTAGTAGTGTATTTGATCAGATGCAAAATAGAAATGTGGTTTCTTGGAGTGCTATGATTGCTTGCTATGCAAAGAATGCAAGGCCTTATGAAGCTTTGGAACTTTTTCGGAAGATGATACTAGAGGCCCCTGATTTGTTTCCCAATTCCGTGACCATGGTTAGTGTTCTTCAAGCTTGTGCAGCTCTTGCTGCCTTGGAGCAGGGGAAGTTCATTCATGGGTACATCCTGAGAAGGGGTCTTGATTCAACCCTTCCGGTCATGAGTAGCCTTATCACAATGTATGCGAGATGTGGTAAGCTTGAGCTGGGCCAACAAGTTTTCAATTTGATAAAAAAGAAGGATGTGGTATCATGGAATTCCTTGATTTCAAGTTATGGAATTCATGGATATGGAAAGAGGGCAATTCAAATTTTTGAAGACATGATCAATCATGGAGTATCACCGAGTCATATTTCATTTGTTAGTGTTTTGGGGGCCTGTAGTCATGAAGGTCTTGTTGACGAGGGGAAGTTAATATTCCACTCTATGGTGAGAGATCATGGATTATATCCCAGCATTGAGCAGTATGCTTGTATGGTGGATCTTCTTGGTCGTGCTAATCGGTTAGATGAAGCAGCCAAGGTCATTGAAGATATGCGGATTGAACCAGGAGCTCAAGTTTGGGGTGCTCTTCTTGGATCATGTAGGATACATGGTAATGTTGATCTGGCAGAGAGAGCAAGCAAAAGGTTATTTGAGCTTGAGCCTAGGAATGCTGGGAATTATGTACTTCTAGCTGATATTTATGCTGAGGCCAAGATGTGGGATGAGGTAAAAAGAGTAAAAAAACTTCTAGAAGCTCGGGAACTTCAAAAGGTACCAGGTCGCAGTTGGATTGAAGTTAATAGGAAGATATACTCATTCGATTCTGTTGACGAGTTTAACCCACAAATGGAGCAACTTCATGCACTGCTGGGTGAATTGTCAATAGAGATGAAAGGACGAGGATATAAGCCACAGACTAAAGTTGTCCTCTATGATCTTGATGAGGAAGAGAAGGAACGTATAGTATTAGGCCATAGTGAAAAGTTAGCAGTTGCATTTGGTCTCATCAATACCAAAAATGGGGAAACCATTCGGATTTCCAAGAATTTGAGGCTATGTGAAGATTGCCATTATGTTACAAAGTTCATATCCAAGTTTACCAATAGAGAGATTCTAGTCCGAGATGTGAATCGGTTTCACCATTTCCGTGACGGGGTTTGTTCATGCGGGGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0031425 GO:0031426 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

800

Amino Acids

90.17

Weight (kDa)

6.41

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm_PDR	PF25515	52 - 145	1.3e-23	Plastid division regulator ARM repeat
PPR_2	PF13041	285 - 331	4.2e-06	PPR repeat family
PPR_2	PF13041	389 - 439	4.6e-06	PPR repeat family
PPR	PF01535	392 - 418	4.9e-06	PPR repeat
PPR_2	PF13041	492 - 540	1e-09	PPR repeat family
PPR	PF01535	495 - 525	8.8e-07	PPR repeat
E_motif	PF20431	610 - 672	2.2e-19	E motif
DYW_deaminase	PF14432	708 - 800	1e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46790
fragaria_vesca	FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510
malus_domestica	MD02G1305500.v1.1 MD07G1020200.v1.1
prunus_persica	Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1
pyrus_communis	pycom02g25600
rosa_chinensis	RchiOBHm_Chr1g0317361
rosa_laevigata	RLG00000029567 RLG00000030602 RLG00000030604
rosa_multiflora	Rmu_co8304249.1_g000001 Rmu_sc0005092.1_g000005 Rmu_sc0009583.1_g000011 Rmu_sc0032747.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330460 Rroxscaffold_4G00330470
rosa_rugosa	Rorug01G0016100
rosa_samantha	Rh1AG027400 Rh1BG023300 Rh1CG025400 Rh1DG045700
rosa_wichuraiana	Rw1G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1993
AccB1I	GGYRCC	1 cut(s)	1993
AccB7I	CCANNNNNTGG	2 cut(s)	1663, 1938
AccI	GTMKAC	1 cut(s)	971
AciI	CCGC	4 cut(s)	694, 747, 1774, 2388
AclWI	GGATC	3 cut(s)	72, 1725, 1822
AcoI	YGGCCR	2 cut(s)	771, 898
AcsI	RAATTY	6 cut(s)	13, 919, 1492, 1515, 1545, 2266
AcuI	CTGAAG	3 cut(s)	39, 179, 575
AcvI	CACGTG	1 cut(s)	824
AfaI	GTAC	6 cut(s)	794, 926, 981, 1358, 1905, 1995
AjiI	CACGTC	1 cut(s)	724
AjnI	CCWGG	4 cut(s)	348, 696, 1783, 1996
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
Alw21I	GWGCWC	4 cut(s)	376, 675, 1792, 1807
Alw26I	GTCTC	1 cut(s)	2228
AlwI	GGATC	3 cut(s)	72, 1725, 1822
Ama87I	CYCGRG	1 cut(s)	1977
AoxI	GGCC	9 cut(s)	771, 898, 1071, 1217, 1260, 1444, 1611, 1929, 2191
ApaI	GGGCCC	1 cut(s)	1075
ApeKI	GCWGC	7 cut(s)	176, 179, 239, 536, 1316, 1325, 1751
ApoI	RAATTY	6 cut(s)	13, 919, 1492, 1515, 1545, 2266
AseI	ATTAAT	1 cut(s)	584
Asp700I	GAANNNNTTC	2 cut(s)	1239, 2250
Asp718I	GGTACC	1 cut(s)	1993
AspA2I	CCTAGG	1 cut(s)	1883
AspS9I	GGNCC	6 cut(s)	754, 1071, 1072, 1261, 1444, 1611
AsuHPI	GGTGA	5 cut(s)	620, 1569, 1678, 2105, 2351
AsuNHI	GCTAGC	1 cut(s)	619
AvaI	CYCGRG	1 cut(s)	1977
AvaII	GGWCC	1 cut(s)	754
AvrII	CCTAGG	1 cut(s)	1883
BaeGI	GKGCMC	1 cut(s)	1075
BalI	TGGCCA	2 cut(s)	773, 900
BanI	GGYRCC	1 cut(s)	1993
BanII	GRGCYC	4 cut(s)	675, 886, 1075, 1792
BarI	GAAGNNNNNNTAC	2 cut(s)	1950, 1982
BauI	CACGAG	1 cut(s)	369
BbrPI	CACGTG	1 cut(s)	824
BbsI	GAAGAC	2 cut(s)	374, 1560
Bbv12I	GWGCWC	4 cut(s)	376, 675, 1792, 1807
BbvCI	CCTCAGC	1 cut(s)	1926
BbvI	GCAGC	7 cut(s)	166, 188, 251, 523, 1312, 1328, 1763
BccI	CCATC	4 cut(s)	560, 707, 737, 818
BciT130I	CCWGG	4 cut(s)	350, 698, 1785, 1998
BciVI	GTATCC	1 cut(s)	1818
BclI	TGATCA	2 cut(s)	1150, 1560
BcoDI	GTCTC	1 cut(s)	2228
BfaI	CTAG	9 cut(s)	224, 491, 620, 1137, 1256, 1884, 1910, 1970, 2336
BfmI	CTRYAG	2 cut(s)	537, 1615
BfuI	GTATCC	1 cut(s)	1818
BisI	GCNGC	7 cut(s)	177, 180, 240, 537, 1317, 1326, 1752
BlnI	CCTAGG	1 cut(s)	1883
BlsI	GCNGC	7 cut(s)	178, 181, 241, 538, 1318, 1327, 1753
Bme1390I	CCNGG	4 cut(s)	350, 698, 1785, 1998
Bme18I	GGWCC	1 cut(s)	754
BmeT110I	CYCGRG	1 cut(s)	1977
BmgBI	CACGTC	1 cut(s)	724
BmgT120I	GGNCC	6 cut(s)	754, 1071, 1072, 1261, 1444, 1611
BmiI	GGNNCC	6 cut(s)	755, 1072, 1073, 1263, 1612, 1995
BmrFI	CCNGG	4 cut(s)	350, 698, 1785, 1998
BmsI	GCATC	5 cut(s)	247, 259, 476, 699, 1146
BmtI	GCTAGC	1 cut(s)	623
BpiI	GAAGAC	2 cut(s)	374, 1560
BplI	GAGNNNNNCTC	4 cut(s)	779, 811, 791, 823
BpmI	CTGGAG	1 cut(s)	1007
Bpu10I	CCTNAGC	1 cut(s)	1926
BpuEI	CTTGAG	5 cut(s)	425, 599, 1457, 1776, 1898
BsaAI	YACGTR	3 cut(s)	824, 969, 975
BsaBI	GATNNNNATC	1 cut(s)	2349
BsaI	GGTCTC	1 cut(s)	2228
BsaJI	CCNNGG	8 cut(s)	161, 348, 349, 901, 1290, 1329, 1755, 1883
BsaWI	WCCGGW	1 cut(s)	1390
BsaXI	ACNNNNNCTCC	2 cut(s)	1779, 1809
Bse1I	ACTGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	324
Bse8I	GATNNNNATC	1 cut(s)	2349
BseBI	CCWGG	4 cut(s)	350, 698, 1785, 1998
BseDI	CCNNGG	8 cut(s)	161, 348, 349, 901, 1290, 1329, 1755, 1883
BseGI	GGATG	6 cut(s)	82, 250, 690, 1359, 1483, 1948
BseJI	GATNNNNATC	1 cut(s)	2349
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	7 cut(s)	30, 294, 389, 789, 900, 1355, 1917
BseNI	ACTGG	1 cut(s)	303
BseSI	GKGCMC	1 cut(s)	1075
BseXI	GCAGC	7 cut(s)	166, 188, 251, 523, 1312, 1328, 1763
BseYI	CCCAGC	4 cut(s)	1441, 1688, 1892, 2089
BsgI	GTGCAG	1 cut(s)	1335
BshFI	GGCC	9 cut(s)	773, 900, 1073, 1219, 1262, 1446, 1613, 1931, 2193
BshNI	GGYRCC	1 cut(s)	1993
BsiHKAI	GWGCWC	4 cut(s)	376, 675, 1792, 1807
BsiHKCI	CYCGRG	1 cut(s)	1977
BsiSI	CCGG	1 cut(s)	1391
BslFI	GGGAC	2 cut(s)	331, 767
BsmAI	GTCTC	1 cut(s)	2228
BsmFI	GGGAC	2 cut(s)	331, 767
BsmI	GAATGC	5 cut(s)	49, 823, 874, 1216, 1894
BsnI	GGCC	9 cut(s)	773, 900, 1073, 1219, 1262, 1446, 1613, 1931, 2193
Bso31I	GGTCTC	1 cut(s)	2228
BsoBI	CYCGRG	1 cut(s)	1977
Bsp120I	GGGCCC	1 cut(s)	1071
Bsp1286I	GDGCHC	6 cut(s)	376, 675, 886, 1075, 1792, 1807
Bsp1407I	TGTACA	1 cut(s)	924
Bsp19I	CCATGG	2 cut(s)	901, 1290
BspACI	CCGC	4 cut(s)	694, 747, 1774, 2388
BspANI	GGCC	9 cut(s)	773, 900, 1073, 1219, 1262, 1446, 1613, 1931, 2193
BspCNI	CTCAG	7 cut(s)	31, 295, 388, 790, 901, 1356, 1918
BspHI	TCATGA	4 cut(s)	274, 640, 1395, 1621
BspLI	GGNNCC	6 cut(s)	755, 1072, 1073, 1263, 1612, 1995
BspMAI	CTGCAG	1 cut(s)	541
BspOI	GCTAGC	1 cut(s)	623
BspPI	GGATC	3 cut(s)	72, 1725, 1822
BspQI	GCTCTTC	2 cut(s)	156, 1812
BspT107I	GGYRCC	1 cut(s)	1993
BspTNI	GGTCTC	1 cut(s)	2228
BsrDI	GCAATG	1 cut(s)	324
BsrGI	TGTACA	1 cut(s)	924
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	8 cut(s)	161, 348, 349, 901, 1290, 1329, 1755, 1883
BssNAI	GTATAC	1 cut(s)	972
BssSI	CACGAG	1 cut(s)	369
BssT1I	CCWWGG	6 cut(s)	161, 901, 1290, 1329, 1755, 1883
Bst1107I	GTATAC	1 cut(s)	972
Bst2BI	CACGAG	1 cut(s)	369
Bst2UI	CCWGG	4 cut(s)	350, 698, 1785, 1998
Bst4CI	ACNGT	1 cut(s)	591
Bst6I	CTCTTC	4 cut(s)	21, 156, 1812, 2163
BstAPI	GCANNNNNTGC	3 cut(s)	1054, 1211, 1322
BstAUI	TGTACA	1 cut(s)	924
BstBAI	YACGTR	3 cut(s)	824, 969, 975
BstC8I	GCNNGC	4 cut(s)	621, 898, 1198, 1858
BstDEI	CTNAG	9 cut(s)	39, 303, 375, 386, 426, 798, 909, 1364, 1926
BstDSI	CCRYGG	2 cut(s)	901, 1290
BstEII	GGTNACC	1 cut(s)	608
BstENI	CCTNNNNNAGG	2 cut(s)	194, 197
BstF5I	GGATG	6 cut(s)	82, 250, 690, 1359, 1483, 1948
BstMAI	GTCTC	1 cut(s)	2228
BstNI	CCWGG	4 cut(s)	350, 698, 1785, 1998
BstPI	GGTNACC	1 cut(s)	608
BstSCI	CCNGG	4 cut(s)	348, 696, 1783, 1996
BstSFI	CTRYAG	2 cut(s)	537, 1615
BstSLI	GKGCMC	1 cut(s)	1075
BstSNI	TACGTA	2 cut(s)	969, 975
BstV1I	GCAGC	7 cut(s)	166, 188, 251, 523, 1312, 1328, 1763
BstV2I	GAAGAC	2 cut(s)	374, 1560
BstX2I	RGATCY	2 cut(s)	64, 1717
BstXI	CCANNNNNNTGG	1 cut(s)	1099
BstYI	RGATCY	2 cut(s)	64, 1717
BstZ17I	GTATAC	1 cut(s)	972
BsuI	GTATCC	1 cut(s)	1818
BsuRI	GGCC	9 cut(s)	773, 900, 1073, 1219, 1262, 1446, 1613, 1931, 2193
BtgI	CCRYGG	2 cut(s)	901, 1290
BtrI	CACGTC	1 cut(s)	724
BtsCI	GGATG	6 cut(s)	82, 250, 690, 1359, 1483, 1948
BtsI	GCAGTG	1 cut(s)	2084
BtsIMutI	CAGTG	2 cut(s)	296, 2084
Cac8I	GCNNGC	4 cut(s)	621, 898, 1198, 1858
CciI	TCATGA	4 cut(s)	274, 640, 1395, 1621
Cfr13I	GGNCC	6 cut(s)	754, 1071, 1072, 1261, 1444, 1611
CseI	GACGC	1 cut(s)	1046
CsiI	ACCWGGT	1 cut(s)	1996
Csp6I	GTAC	6 cut(s)	793, 925, 980, 1357, 1904, 1994
CviQI	GTAC	6 cut(s)	793, 925, 980, 1357, 1904, 1994
DdeI	CTNAG	9 cut(s)	39, 303, 375, 386, 426, 798, 909, 1364, 1926
EaeI	YGGCCR	2 cut(s)	771, 898
Eam1104I	CTCTTC	4 cut(s)	21, 156, 1812, 2163
EarI	CTCTTC	4 cut(s)	21, 156, 1812, 2163
EciI	GGCGGA	1 cut(s)	683
Ecl136II	GAGCTC	2 cut(s)	673, 1790
Eco105I	TACGTA	2 cut(s)	969, 975
Eco130I	CCWWGG	6 cut(s)	161, 901, 1290, 1329, 1755, 1883
Eco147I	AGGCCT	1 cut(s)	1219
Eco24I	GRGCYC	4 cut(s)	675, 886, 1075, 1792
Eco31I	GGTCTC	1 cut(s)	2228
Eco47I	GGWCC	1 cut(s)	754
Eco53kI	GAGCTC	2 cut(s)	673, 1790
Eco57I	CTGAAG	3 cut(s)	39, 179, 575
Eco72I	CACGTG	1 cut(s)	824
Eco88I	CYCGRG	1 cut(s)	1977
Eco91I	GGTNACC	1 cut(s)	608
EcoICRI	GAGCTC	2 cut(s)	673, 1790
EcoNI	CCTNNNNNAGG	2 cut(s)	194, 197
EcoO109I	RGGNCCY	3 cut(s)	1071, 1261, 1611
EcoO65I	GGTNACC	1 cut(s)	608
EcoRI	GAATTC	3 cut(s)	13, 1492, 1515
EcoRII	CCWGG	4 cut(s)	348, 696, 1783, 1996
EcoT14I	CCWWGG	6 cut(s)	161, 901, 1290, 1329, 1755, 1883
EcoT38I	GRGCYC	4 cut(s)	675, 886, 1075, 1792
ErhI	CCWWGG	6 cut(s)	161, 901, 1290, 1329, 1755, 1883
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FaqI	GGGAC	2 cut(s)	331, 767
FauI	CCCGC	2 cut(s)	740, 2381
FbaI	TGATCA	2 cut(s)	1150, 1560
FblI	GTMKAC	1 cut(s)	971
Fnu4HI	GCNGC	7 cut(s)	177, 180, 240, 537, 1317, 1326, 1752
FokI	GGATG	6 cut(s)	89, 237, 677, 1346, 1490, 1955
FriOI	GRGCYC	4 cut(s)	675, 886, 1075, 1792
Fsp4HI	GCNGC	7 cut(s)	177, 180, 240, 537, 1317, 1326, 1752
FspBI	CTAG	9 cut(s)	224, 491, 620, 1137, 1256, 1884, 1910, 1970, 2336
GluI	GCNGC	7 cut(s)	177, 180, 240, 537, 1317, 1326, 1752
GsaI	CCCAGC	4 cut(s)	1445, 1692, 1896, 2093
GsuI	CTGGAG	1 cut(s)	1007
HaeIII	GGCC	9 cut(s)	773, 900, 1073, 1219, 1262, 1446, 1613, 1931, 2193
HapII	CCGG	1 cut(s)	1391
HgaI	GACGC	1 cut(s)	1046
HincII	GTYRAC	2 cut(s)	1636, 2050
HindII	GTYRAC	2 cut(s)	1636, 2050
HindIII	AAGCTT	5 cut(s)	560, 987, 1227, 1308, 1433
HinfI	GANTC	9 cut(s)	379, 701, 806, 1039, 1379, 1582, 2042, 2332, 2350
HpaII	CCGG	1 cut(s)	1391
HphI	GGTGA	5 cut(s)	620, 1569, 1678, 2105, 2351
Hpy166II	GTNNAC	5 cut(s)	966, 972, 1636, 2050, 2319
Hpy8I	GTNNAC	5 cut(s)	966, 972, 1636, 2050, 2319
HpyAV	CCTTC	7 cut(s)	203, 1021, 1362, 1397, 1468, 1619, 2167
HpyCH4III	ACNGT	1 cut(s)	591
HpyCH4IV	ACGT	6 cut(s)	723, 823, 890, 968, 974, 2179
HpyF3I	CTNAG	9 cut(s)	39, 303, 375, 386, 426, 798, 909, 1364, 1926
HpySE526I	ACGT	6 cut(s)	723, 823, 890, 968, 974, 2179
KpnI	GGTACC	1 cut(s)	1997
Ksp22I	TGATCA	2 cut(s)	1150, 1560
LguI	GCTCTTC	2 cut(s)	156, 1812
LmnI	GCTCC	3 cut(s)	1333, 1787, 2071
Lsp1109I	GCAGC	7 cut(s)	166, 188, 251, 523, 1312, 1328, 1763
LweI	GCATC	5 cut(s)	247, 259, 476, 699, 1146
MabI	ACCWGGT	1 cut(s)	1996
MaeI	CTAG	9 cut(s)	224, 491, 620, 1137, 1256, 1884, 1910, 1970, 2336
MaeII	ACGT	6 cut(s)	723, 823, 890, 968, 974, 2179
MaeIII	GTNAC	6 cut(s)	608, 1058, 1084, 1285, 2296, 2369
MfeI	CAATTG	1 cut(s)	942
MflI	RGATCY	2 cut(s)	64, 1717
MhlI	GDGCHC	6 cut(s)	376, 675, 886, 1075, 1792, 1807
MlsI	TGGCCA	2 cut(s)	773, 900
MluNI	TGGCCA	2 cut(s)	773, 900
MlyI	GAGTC	3 cut(s)	388, 800, 1591
MmeI	TCCRAC	4 cut(s)	526, 783, 1080, 1988
Mox20I	TGGCCA	2 cut(s)	773, 900
MroXI	GAANNNNTTC	2 cut(s)	1239, 2250
MscI	TGGCCA	2 cut(s)	773, 900
MseI	TTAA	8 cut(s)	51, 71, 246, 584, 677, 1649, 2019, 2058
MslI	CAYNNNNRTG	6 cut(s)	255, 1065, 1080, 1524, 1833, 2367
Msp20I	TGGCCA	2 cut(s)	773, 900
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	1 cut(s)	1391
MspR9I	CCNGG	4 cut(s)	350, 698, 1785, 1998
MunI	CAATTG	1 cut(s)	942
Mva1269I	GAATGC	5 cut(s)	49, 823, 874, 1216, 1894
MvaI	CCWGG	4 cut(s)	350, 698, 1785, 1998
NcoI	CCATGG	2 cut(s)	901, 1290
NheI	GCTAGC	1 cut(s)	619
NlaIV	GGNNCC	6 cut(s)	755, 1072, 1073, 1263, 1612, 1995
NmeAIII	GCCGAG	1 cut(s)	37
NmuCI	GTSAC	4 cut(s)	608, 1058, 1285, 2369
PagI	TCATGA	4 cut(s)	274, 640, 1395, 1621
PasI	CCCWGGG	1 cut(s)	349
PceI	AGGCCT	1 cut(s)	1219
PciSI	GCTCTTC	2 cut(s)	156, 1812
PctI	GAATGC	5 cut(s)	49, 823, 874, 1216, 1894
PdmI	GAANNNNTTC	2 cut(s)	1239, 2250
PfeI	GAWTC	6 cut(s)	701, 1039, 1379, 2042, 2332, 2350
PflMI	CCANNNNNTGG	2 cut(s)	1663, 1938
PkrI	GCNGC	7 cut(s)	178, 181, 241, 538, 1318, 1327, 1753
PleI	GAGTC	3 cut(s)	387, 800, 1590
PmaCI	CACGTG	1 cut(s)	824
PmlI	CACGTG	1 cut(s)	824
PpsI	GAGTC	3 cut(s)	387, 800, 1590
Ppu21I	YACGTR	3 cut(s)	824, 969, 975
PshBI	ATTAAT	1 cut(s)	584
Psp124BI	GAGCTC	2 cut(s)	675, 1792
Psp6I	CCWGG	4 cut(s)	348, 696, 1783, 1996
PspCI	CACGTG	1 cut(s)	824
PspEI	GGTNACC	1 cut(s)	608
PspFI	CCCAGC	4 cut(s)	1441, 1688, 1892, 2089
PspGI	CCWGG	4 cut(s)	348, 696, 1783, 1996
PspN4I	GGNNCC	6 cut(s)	755, 1072, 1073, 1263, 1612, 1995
PspOMI	GGGCCC	1 cut(s)	1071
PspPI	GGNCC	6 cut(s)	754, 1071, 1072, 1261, 1444, 1611
PsrI	GAACNNNNNNTAC	2 cut(s)	1100, 1132
PstI	CTGCAG	1 cut(s)	541
PsuI	RGATCY	2 cut(s)	64, 1717
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	6 cut(s)	794, 926, 981, 1358, 1905, 1995
RsaNI	GTAC	6 cut(s)	793, 925, 980, 1357, 1904, 1994
RseI	CAYNNNNRTG	6 cut(s)	255, 1065, 1080, 1524, 1833, 2367
SacI	GAGCTC	2 cut(s)	675, 1792
SapI	GCTCTTC	2 cut(s)	156, 1812
SaqAI	TTAA	8 cut(s)	51, 71, 246, 584, 677, 1649, 2019, 2058
SatI	GCNGC	7 cut(s)	177, 180, 240, 537, 1317, 1326, 1752
Sau96I	GGNCC	6 cut(s)	754, 1071, 1072, 1261, 1444, 1611
SchI	GAGTC	3 cut(s)	388, 800, 1591
ScrFI	CCNGG	4 cut(s)	350, 698, 1785, 1998
SduI	GDGCHC	6 cut(s)	376, 675, 886, 1075, 1792, 1807
SexAI	ACCWGGT	1 cut(s)	1996
SfaNI	GCATC	5 cut(s)	247, 259, 476, 699, 1146
SfcI	CTRYAG	2 cut(s)	537, 1615
SinI	GGWCC	1 cut(s)	754
SmiMI	CAYNNNNRTG	6 cut(s)	255, 1065, 1080, 1524, 1833, 2367
SmlI	CTYRAG	5 cut(s)	404, 614, 1436, 1791, 1877
SmoI	CTYRAG	5 cut(s)	404, 614, 1436, 1791, 1877
SnaBI	TACGTA	2 cut(s)	969, 975
SseBI	AGGCCT	1 cut(s)	1219
SsiI	CCGC	4 cut(s)	694, 747, 1774, 2388
SspI	AATATT	1 cut(s)	1653
SspMI	CTAG	9 cut(s)	224, 491, 620, 1137, 1256, 1884, 1910, 1970, 2336
SstI	GAGCTC	2 cut(s)	675, 1792
StuI	AGGCCT	1 cut(s)	1219
StyD4I	CCNGG	4 cut(s)	348, 696, 1783, 1996
StyI	CCWWGG	6 cut(s)	161, 901, 1290, 1329, 1755, 1883
TaaI	ACNGT	1 cut(s)	591
TaiI	ACGT	6 cut(s)	726, 826, 893, 971, 977, 2182
TaqI	TCGA	3 cut(s)	813, 834, 2040
TatI	WGTACW	4 cut(s)	792, 924, 979, 1903
TfiI	GAWTC	6 cut(s)	701, 1039, 1379, 2042, 2332, 2350
Tru1I	TTAA	8 cut(s)	51, 71, 246, 584, 677, 1649, 2019, 2058
Tru9I	TTAA	8 cut(s)	51, 71, 246, 584, 677, 1649, 2019, 2058
TscAI	CASTG	2 cut(s)	303, 2091
TseFI	GTSAC	4 cut(s)	608, 1058, 1285, 2369
TseI	GCWGC	7 cut(s)	176, 179, 239, 536, 1316, 1325, 1751
Tsp45I	GTSAC	4 cut(s)	608, 1058, 1285, 2369
TspGWI	ACGGA	3 cut(s)	1077, 1273, 2357
TspRI	CASTG	2 cut(s)	303, 2091
Van91I	CCANNNNNTGG	2 cut(s)	1663, 1938
VpaK11BI	GGWCC	1 cut(s)	754
VspI	ATTAAT	1 cut(s)	584
XagI	CCTNNNNNAGG	2 cut(s)	194, 197
XapI	RAATTY	6 cut(s)	13, 919, 1492, 1515, 1545, 2266
XbaI	TCTAGA	1 cut(s)	1969
XcmI	CCANNNNNNNNNTGG	2 cut(s)	740, 2004
XmaJI	CCTAGG	1 cut(s)	1883
XmiI	GTMKAC	1 cut(s)	971
XmnI	GAANNNNTTC	2 cut(s)	1239, 2250
XspI	CTAG	9 cut(s)	224, 491, 620, 1137, 1256, 1884, 1910, 1970, 2336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.