Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005788

Physical Location & Seq

Genomic Coordinates Reverse (-)

64341510 .. 64345653

Gene Structure 4144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030604

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2424 bp

ATGGCTGCTCTGGCTCACGCCCTGCTCGGAATCATCCCAGCTCGGTGTGGTCTCTGCCGAGCCATCAATCCCAACCACCTCTGCTGCTCTTGGCGCCCTTTGCCTAATCCCTCTGGATTCTCCATTTCCAGTAGGACCCACCTTGCTAATCTCACCGCCCGCTCCAGACTCAACGCCGCCCACACCCTCACCGTCCACAATGCTTCGACTCCCACCACTCTTGAAATCCCCGTCACCTGTTACCAGCTTATTGGTGTTCCTGATCAAGCTGAGAAAGATGAGGTTATTAAAGCGGTTATGGATTTGAAGAATTCTCAAGTTGAAGATGGATATACTGAGAATGCTATTAAATCTCGGCAGGATCTCTTAATGGATGTGAGAGAGAAGCTTATTTTTGAACCAGAATATGCTGGTAATAGTAATGAAAATATCCGACCTAAATCTGCCCTTCAAATCCCTTGGGCATGGTTGGCAGCTGCTCTTTGCCTCCTTCAGGAGGTTAGGGAAGTAGAGCTTGTGCTAGATATTGGTCAAGCAGCTATTAAGCATCCAGATGCTAAGCCATATATTCATGATATTCTTCTTTCTATGGCACTGGCTGAGTGTGCAACTGCAATGATTGGTTTTGAGAGGAACAAAGTGTCCCAGGGATTTGAAGCTATTGCTCGTGCTCAGAGTCTTCTAAGAAGTAAAAAATCTCTTGAGAAAATATCATTATTATCTAAGATTGACAGAGCTAAAACTATGTGTGAGTGTCTGATTGCATCAGAGCTTACTGATCTGAAACTAGAGGAAGCTCTTACGCTGTTTCTTCTTGGTAAGGATAATGAGGCTGCAGTTGTTGAAAAGCTGAAGAAGCTTGATGGAAGCAAAAACCAATTAATACAGTCTTTATGCAAACAAGGTGACCTCAAGCTAGCTCTACAACTTTTTCCTCACGAACCCAACCCCTCCCAACAGACCTGTGAGCTCTTAATCCTTTCTTGCATCCGCCAGGATTCTCTCTCTGATGGGTTAGACGTGCATAGCCACCTTGTTGAAGGTGGGTGGGACCAAGACCCTTTTTTGGCCACGAAACTTATAGAGATGTACTCTGAGTTGGACTCCATCGAGAATGCACGTGAAGTATTCGATAAAACTCGTAAAAGAACTATTTATATGTGGAATGCACTTTTTAGAGCCCTTACGTTGGCTGGCCATGGAACTGAGGTGCTAAATTTGTACAGACAAATGAATACAATTGGGGTTTCATCTGATCGGTTTACGTATACGTATGTACTCAAAGCTTGTGTTGTTTCAGAGATTTTGAGTTCGCTTCTCCAGAAGGGAAAGGAGATTCATGGGCATATTTTGCGTCACGGATATGGGGCCCATGTCCATGTAATGACCACTTTGTTGGATATGTATGCAAGGTTCGGGTTCGTTTCATGTGCTAGTAGTGTATTTGATCAGATGCAAAATAGAAATGTGGTTTCTTGGAGTGCTATGATTGCTTGCTATGCAAAGAATGCAAGGCCTTATGAAGCTTTGGAACTTTTTCGGAAGATGATACTAGAGGCCCCTGATTTGTTTCCCAACTCCGTGACCATGGTTAGTGTTCTTCAAGCTTGTGCAGCTCTTGCTGCCTTGGAGCAGGGGAAGTTCATTCATGGGTACATCCTGAGAAGGGGTCTTGATTCAACCCTTCCGGTTATGAGTAGCCTTATCACAATGTATGCGAGATGTGGTAAGCTTGAGCTGGGCCAACAAGTTTTCAATATGATAAAAAACAAGGATGTTGTTTCATGGAATTCCTTGATTTCAAGTTATGGGATTCATGGATATGGAAAGAGGGCAATTCAAATTTTTGAAGACATGATGAATCATGGAGTATCACCGAGTCACATTTCATTTGTTAGTGTTTTGGGGGCTTGTAGTCATGAAGGTCTTGTTGAAGAGGGGAAGGTGATATTCCAGTCTATGGTGAGAGAGCATGGATTATATCCCAGCATTGAGCAGTATGCTTGTATGGTGGATCTTCTTGGTCGTGCTAATCGGTTAGATGAAGCAGCAAAAGTCATTGAAGATATGCGGATTGAACCAGGAGCTCAAGTTTGGGGTGCTCTTCTCGGATCATGTAGGATACATGAGATGAAGGGACGAGGATATAAGCCACATACTAAAGTTGTCCTCTATGATCTTGATGAGGAAGAGAAGGAACGTATAGTATTAGGCCATAGTGAAAAGTTAGCAGTTGCATTTGGTCTCATAAATACCAAAAATGGGGAAACCATTCGGATTTCCAAGAATTTGAGGCTATGTGAAGATTGCCATTATGTTACAAAGTTCATATCCAAGTTTACCAATAGAGAGATTCTAGTCCGAGATGTGAATCGGTTTCACCATTTCCGTGACGGGGTTTGTTCATGTGGGGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0031425 GO:0031426 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

808

Amino Acids

90.32

Weight (kDa)

6.85

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm_PDR	PF25515	151 - 244	1.4e-23	Plastid division regulator ARM repeat
PPR_2	PF13041	384 - 430	4.3e-06	PPR repeat family
PPR_2	PF13041	488 - 538	4.6e-06	PPR repeat family
PPR	PF01535	491 - 517	5e-06	PPR repeat
PPR_2	PF13041	591 - 639	8.3e-10	PPR repeat family
PPR	PF01535	594 - 624	1.5e-06	PPR repeat
DYW_deaminase	PF14432	715 - 807	1.6e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46790
fragaria_vesca	FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510
malus_domestica	MD02G1305500.v1.1 MD07G1020200.v1.1
prunus_persica	Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1
pyrus_communis	pycom02g25600
rosa_chinensis	RchiOBHm_Chr1g0317361
rosa_laevigata	RLG00000029567 RLG00000030602 RLG00000030604
rosa_multiflora	Rmu_co8304249.1_g000001 Rmu_sc0005092.1_g000005 Rmu_sc0009583.1_g000011 Rmu_sc0032747.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330460 Rroxscaffold_4G00330470
rosa_rugosa	Rorug01G0016100
rosa_samantha	Rh1AG027400 Rh1BG023300 Rh1CG025400 Rh1DG045700
rosa_wichuraiana	Rw1G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	93
AccB7I	CCANNNNNTGG	1 cut(s)	1960
AccBSI	CCGCTC	1 cut(s)	162
AccI	GTMKAC	1 cut(s)	1268
AciI	CCGC	6 cut(s)	156, 160, 177, 293, 991, 2071
AclWI	GGATC	3 cut(s)	369, 2022, 2119
AcoI	YGGCCR	2 cut(s)	1068, 1195
AcsI	RAATTY	5 cut(s)	310, 1216, 1789, 1842, 2287
AcuI	CTGAAG	2 cut(s)	476, 872
AcvI	CACGTG	1 cut(s)	1121
AcyI	GRCGYC	1 cut(s)	94
AfaI	GTAC	4 cut(s)	1091, 1223, 1278, 1655
AfiI	CCNNNNNNNGG	8 cut(s)	493, 496, 1066, 1189, 1666, 1960, 2262, 2395
AjiI	CACGTC	1 cut(s)	1021
AjnI	CCWGG	3 cut(s)	645, 993, 2080
AloI	GAACNNNNNNTCC	2 cut(s)	626, 658
Alw21I	GWGCWC	4 cut(s)	673, 972, 2089, 2104
Alw26I	GTCTC	2 cut(s)	56, 2249
AlwI	GGATC	3 cut(s)	369, 2022, 2119
AoxI	GGCC	7 cut(s)	1068, 1195, 1368, 1514, 1557, 1741, 2212
ApaI	GGGCCC	1 cut(s)	1372
ApeKI	GCWGC	9 cut(s)	5, 84, 473, 476, 536, 833, 1613, 1622, 2048
ApoI	RAATTY	5 cut(s)	310, 1216, 1789, 1842, 2287
AseI	ATTAAT	1 cut(s)	881
Asp700I	GAANNNNTTC	2 cut(s)	1536, 2271
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	6 cut(s)	135, 1051, 1368, 1369, 1558, 1741
AsuHPI	GGTGA	8 cut(s)	145, 181, 226, 917, 1866, 1957, 1975, 2372
AsuNHI	GCTAGC	1 cut(s)	916
AvaII	GGWCC	2 cut(s)	135, 1051
BaeGI	GKGCMC	1 cut(s)	1372
BalI	TGGCCA	2 cut(s)	1070, 1197
BanI	GGYRCC	1 cut(s)	93
BanII	GRGCYC	4 cut(s)	972, 1183, 1372, 2089
BauI	CACGAG	1 cut(s)	666
BbrPI	CACGTG	1 cut(s)	1121
BbsI	GAAGAC	2 cut(s)	671, 1857
Bbv12I	GWGCWC	4 cut(s)	673, 972, 2089, 2104
BbvI	GCAGC	8 cut(s)	71, 463, 485, 548, 820, 1609, 1625, 2060
BccI	CCATC	5 cut(s)	71, 320, 857, 1004, 1115
BciT130I	CCWGG	3 cut(s)	647, 995, 2082
BciVI	GTATCC	1 cut(s)	2115
BclI	TGATCA	2 cut(s)	262, 1447
BcoDI	GTCTC	2 cut(s)	56, 2249
BfaI	CTAG	6 cut(s)	521, 788, 917, 1434, 1553, 2357
BfmI	CTRYAG	1 cut(s)	834
BfoI	RGCGCY	1 cut(s)	97
BfuI	GTATCC	1 cut(s)	2115
BlpI	GCTNAGC	1 cut(s)	558
Bme1390I	CCNGG	3 cut(s)	647, 995, 2082
Bme18I	GGWCC	2 cut(s)	135, 1051
BmgBI	CACGTC	1 cut(s)	1021
BmgT120I	GGNCC	6 cut(s)	135, 1051, 1368, 1369, 1558, 1741
BmiI	GGNNCC	6 cut(s)	95, 137, 1052, 1369, 1370, 1560
BmrFI	CCNGG	3 cut(s)	647, 995, 2082
BmsI	GCATC	5 cut(s)	544, 556, 773, 996, 1443
BmtI	GCTAGC	1 cut(s)	920
BpiI	GAAGAC	2 cut(s)	671, 1857
BplI	GAGNNNNNCTC	4 cut(s)	1076, 1108, 1088, 1120
BpmI	CTGGAG	2 cut(s)	148, 1304
Bpu1102I	GCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	5 cut(s)	300, 722, 896, 1754, 2073
BsaAI	YACGTR	3 cut(s)	1121, 1266, 1272
BsaBI	GATNNNNATC	1 cut(s)	2370
BsaHI	GRCGYC	1 cut(s)	94
BsaI	GGTCTC	2 cut(s)	56, 2249
BsaJI	CCNNGG	6 cut(s)	458, 645, 646, 1198, 1587, 1626
BsaWI	WCCGGW	1 cut(s)	1687
BsaXI	ACNNNNNCTCC	2 cut(s)	2076, 2106
Bsc4I	CCNNNNNNNGG	8 cut(s)	493, 496, 1066, 1189, 1666, 1960, 2262, 2395
Bse1I	ACTGG	3 cut(s)	129, 600, 1954
Bse3DI	GCAATG	1 cut(s)	621
Bse8I	GATNNNNATC	1 cut(s)	2370
BseBI	CCWGG	3 cut(s)	647, 995, 2082
BseDI	CCNNGG	6 cut(s)	458, 645, 646, 1198, 1587, 1626
BseGI	GGATG	6 cut(s)	33, 379, 547, 987, 1656, 1780
BseJI	GATNNNNATC	1 cut(s)	2370
BseLI	CCNNNNNNNGG	8 cut(s)	493, 496, 1066, 1189, 1666, 1960, 2262, 2395
BseMI	GCAATG	1 cut(s)	621
BseMII	CTCAG	7 cut(s)	261, 327, 591, 686, 1086, 1197, 1652
BseNI	ACTGG	3 cut(s)	129, 600, 1954
BseSI	GKGCMC	1 cut(s)	1372
BseXI	GCAGC	8 cut(s)	71, 463, 485, 548, 820, 1609, 1625, 2060
BseYI	CCCAGC	3 cut(s)	37, 1738, 1985
BsgI	GTGCAG	1 cut(s)	1632
BshFI	GGCC	7 cut(s)	1070, 1197, 1370, 1516, 1559, 1743, 2214
BshNI	GGYRCC	1 cut(s)	93
BsiHKAI	GWGCWC	4 cut(s)	673, 972, 2089, 2104
BsiSI	CCGG	1 cut(s)	1688
BslFI	GGGAC	3 cut(s)	628, 1064, 2151
BslI	CCNNNNNNNGG	8 cut(s)	493, 496, 1066, 1189, 1666, 1960, 2262, 2395
BsmAI	GTCTC	2 cut(s)	56, 2249
BsmFI	GGGAC	3 cut(s)	628, 1064, 2151
BsmI	GAATGC	4 cut(s)	346, 1120, 1171, 1513
BsnI	GGCC	7 cut(s)	1070, 1197, 1370, 1516, 1559, 1743, 2214
Bso31I	GGTCTC	2 cut(s)	56, 2249
Bsp120I	GGGCCC	1 cut(s)	1368
Bsp1286I	GDGCHC	6 cut(s)	673, 972, 1183, 1372, 2089, 2104
Bsp1407I	TGTACA	1 cut(s)	1221
Bsp143I	GATC	8 cut(s)	262, 361, 778, 1255, 1447, 2014, 2111, 2176
Bsp1720I	GCTNAGC	1 cut(s)	558
Bsp19I	CCATGG	2 cut(s)	1198, 1587
BspACI	CCGC	6 cut(s)	156, 160, 177, 293, 991, 2071
BspANI	GGCC	7 cut(s)	1070, 1197, 1370, 1516, 1559, 1743, 2214
BspCNI	CTCAG	7 cut(s)	262, 328, 592, 685, 1087, 1198, 1653
BspHI	TCATGA	2 cut(s)	571, 1918
BspLI	GGNNCC	6 cut(s)	95, 137, 1052, 1369, 1370, 1560
BspMAI	CTGCAG	1 cut(s)	838
BspOI	GCTAGC	1 cut(s)	920
BspPI	GGATC	3 cut(s)	369, 2022, 2119
BspQI	GCTCTTC	1 cut(s)	2109
BspT107I	GGYRCC	1 cut(s)	93
BspTNI	GGTCTC	2 cut(s)	56, 2249
BsrBI	CCGCTC	1 cut(s)	162
BsrDI	GCAATG	1 cut(s)	621
BsrGI	TGTACA	1 cut(s)	1221
BsrI	ACTGG	3 cut(s)	129, 600, 1954
BssECI	CCNNGG	6 cut(s)	458, 645, 646, 1198, 1587, 1626
BssMI	GATC	8 cut(s)	262, 361, 778, 1255, 1447, 2014, 2111, 2176
BssNAI	GTATAC	1 cut(s)	1269
BssNI	GRCGYC	1 cut(s)	94
BssSI	CACGAG	1 cut(s)	666
BssT1I	CCWWGG	4 cut(s)	458, 1198, 1587, 1626
Bst1107I	GTATAC	1 cut(s)	1269
Bst2BI	CACGAG	1 cut(s)	666
Bst2UI	CCWGG	3 cut(s)	647, 995, 2082
Bst4CI	ACNGT	2 cut(s)	193, 888
Bst6I	CTCTTC	3 cut(s)	1929, 2109, 2184
BstACI	GRCGYC	1 cut(s)	94
BstAPI	GCANNNNNTGC	3 cut(s)	1351, 1508, 1619
BstAUI	TGTACA	1 cut(s)	1221
BstBAI	YACGTR	3 cut(s)	1121, 1266, 1272
BstC8I	GCNNGC	4 cut(s)	160, 918, 1195, 1495
BstDSI	CCRYGG	2 cut(s)	1198, 1587
BstEII	GGTNACC	1 cut(s)	905
BstENI	CCTNNNNNAGG	2 cut(s)	491, 494
BstF5I	GGATG	6 cut(s)	33, 379, 547, 987, 1656, 1780
BstH2I	RGCGCY	1 cut(s)	97
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	8 cut(s)	265, 364, 781, 1258, 1450, 2017, 2114, 2179
BstMAI	GTCTC	2 cut(s)	56, 2249
BstMBI	GATC	8 cut(s)	262, 361, 778, 1255, 1447, 2014, 2111, 2176
BstNI	CCWGG	3 cut(s)	647, 995, 2082
BstPI	GGTNACC	1 cut(s)	905
BstSCI	CCNGG	3 cut(s)	645, 993, 2080
BstSFI	CTRYAG	1 cut(s)	834
BstSLI	GKGCMC	1 cut(s)	1372
BstSNI	TACGTA	2 cut(s)	1266, 1272
BstV1I	GCAGC	8 cut(s)	71, 463, 485, 548, 820, 1609, 1625, 2060
BstV2I	GAAGAC	2 cut(s)	671, 1857
BstX2I	RGATCY	2 cut(s)	361, 2014
BstXI	CCANNNNNNTGG	2 cut(s)	251, 1396
BstYI	RGATCY	2 cut(s)	361, 2014
BstZ17I	GTATAC	1 cut(s)	1269
BsuI	GTATCC	1 cut(s)	2115
BsuRI	GGCC	7 cut(s)	1070, 1197, 1370, 1516, 1559, 1743, 2214
BtgI	CCRYGG	2 cut(s)	1198, 1587
BtrI	CACGTC	1 cut(s)	1021
BtsCI	GGATG	6 cut(s)	33, 379, 547, 987, 1656, 1780
BtsIMutI	CAGTG	1 cut(s)	593
Cac8I	GCNNGC	4 cut(s)	160, 918, 1195, 1495
CciI	TCATGA	2 cut(s)	571, 1918
CfoI	GCGC	1 cut(s)	96
Cfr13I	GGNCC	6 cut(s)	135, 1051, 1368, 1369, 1558, 1741
CseI	GACGC	1 cut(s)	1343
Csp6I	GTAC	4 cut(s)	1090, 1222, 1277, 1654
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviQI	GTAC	4 cut(s)	1090, 1222, 1277, 1654
DinI	GGCGCC	1 cut(s)	95
DpnI	GATC	8 cut(s)	264, 363, 780, 1257, 1449, 2016, 2113, 2178
DpnII	GATC	8 cut(s)	262, 361, 778, 1255, 1447, 2014, 2111, 2176
EaeI	YGGCCR	2 cut(s)	1068, 1195
Eam1104I	CTCTTC	3 cut(s)	1929, 2109, 2184
EarI	CTCTTC	3 cut(s)	1929, 2109, 2184
EciI	GGCGGA	1 cut(s)	980
Ecl136II	GAGCTC	2 cut(s)	970, 2087
Eco105I	TACGTA	2 cut(s)	1266, 1272
Eco130I	CCWWGG	4 cut(s)	458, 1198, 1587, 1626
Eco147I	AGGCCT	1 cut(s)	1516
Eco24I	GRGCYC	4 cut(s)	972, 1183, 1372, 2089
Eco31I	GGTCTC	2 cut(s)	56, 2249
Eco47I	GGWCC	2 cut(s)	135, 1051
Eco53kI	GAGCTC	2 cut(s)	970, 2087
Eco57I	CTGAAG	2 cut(s)	476, 872
Eco72I	CACGTG	1 cut(s)	1121
Eco91I	GGTNACC	1 cut(s)	905
EcoICRI	GAGCTC	2 cut(s)	970, 2087
EcoNI	CCTNNNNNAGG	2 cut(s)	491, 494
EcoO109I	RGGNCCY	3 cut(s)	135, 1368, 1558
EcoO65I	GGTNACC	1 cut(s)	905
EcoRI	GAATTC	2 cut(s)	310, 1789
EcoRII	CCWGG	3 cut(s)	645, 993, 2080
EcoT14I	CCWWGG	4 cut(s)	458, 1198, 1587, 1626
EcoT38I	GRGCYC	4 cut(s)	972, 1183, 1372, 2089
EgeI	GGCGCC	1 cut(s)	95
EheI	GGCGCC	1 cut(s)	95
ErhI	CCWWGG	4 cut(s)	458, 1198, 1587, 1626
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FaqI	GGGAC	3 cut(s)	628, 1064, 2151
FauI	CCCGC	1 cut(s)	167
FbaI	TGATCA	2 cut(s)	262, 1447
FblI	GTMKAC	1 cut(s)	1268
FokI	GGATG	6 cut(s)	20, 386, 534, 974, 1643, 1787
FriOI	GRGCYC	4 cut(s)	972, 1183, 1372, 2089
FspBI	CTAG	6 cut(s)	521, 788, 917, 1434, 1553, 2357
GlaI	GCGC	1 cut(s)	95
GsaI	CCCAGC	3 cut(s)	41, 1742, 1989
GsuI	CTGGAG	2 cut(s)	148, 1304
HaeII	RGCGCY	1 cut(s)	97
HaeIII	GGCC	7 cut(s)	1070, 1197, 1370, 1516, 1559, 1743, 2214
HapII	CCGG	1 cut(s)	1688
HgaI	GACGC	1 cut(s)	1343
HhaI	GCGC	1 cut(s)	96
Hin1I	GRCGYC	1 cut(s)	94
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HindIII	AAGCTT	6 cut(s)	386, 857, 1284, 1524, 1605, 1730
HpaII	CCGG	1 cut(s)	1688
HphI	GGTGA	8 cut(s)	145, 181, 226, 917, 1866, 1957, 1975, 2372
Hpy166II	GTNNAC	4 cut(s)	196, 1263, 1269, 2340
Hpy8I	GTNNAC	4 cut(s)	196, 1263, 1269, 2340
HpyCH4III	ACNGT	2 cut(s)	193, 888
HpyCH4IV	ACGT	6 cut(s)	1020, 1120, 1187, 1265, 1271, 2200
HpySE526I	ACGT	6 cut(s)	1020, 1120, 1187, 1265, 1271, 2200
Hsp92I	GRCGYC	1 cut(s)	94
HspAI	GCGC	1 cut(s)	94
KasI	GGCGCC	1 cut(s)	93
Ksp22I	TGATCA	2 cut(s)	262, 1447
Kzo9I	GATC	8 cut(s)	262, 361, 778, 1255, 1447, 2014, 2111, 2176
LguI	GCTCTTC	1 cut(s)	2109
LmnI	GCTCC	3 cut(s)	167, 1630, 2084
Lsp1109I	GCAGC	8 cut(s)	71, 463, 485, 548, 820, 1609, 1625, 2060
LweI	GCATC	5 cut(s)	544, 556, 773, 996, 1443
MaeI	CTAG	6 cut(s)	521, 788, 917, 1434, 1553, 2357
MaeII	ACGT	6 cut(s)	1020, 1120, 1187, 1265, 1271, 2200
MaeIII	GTNAC	8 cut(s)	232, 239, 905, 1355, 1582, 1880, 2317, 2390
MalI	GATC	8 cut(s)	264, 363, 780, 1257, 1449, 2016, 2113, 2178
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	8 cut(s)	262, 361, 778, 1255, 1447, 2014, 2111, 2176
MfeI	CAATTG	1 cut(s)	1239
MflI	RGATCY	2 cut(s)	361, 2014
MhlI	GDGCHC	6 cut(s)	673, 972, 1183, 1372, 2089, 2104
MlsI	TGGCCA	2 cut(s)	1070, 1197
MluCI	AATT	8 cut(s)	310, 878, 1216, 1239, 1789, 1836, 1842, 2287
MluNI	TGGCCA	2 cut(s)	1070, 1197
Mly113I	GGCGCC	1 cut(s)	94
MlyI	GAGTC	5 cut(s)	162, 202, 685, 1097, 1888
MmeI	TCCRAC	3 cut(s)	457, 1080, 1377
Mox20I	TGGCCA	2 cut(s)	1070, 1197
MroXI	GAANNNNTTC	2 cut(s)	1536, 2271
MscI	TGGCCA	2 cut(s)	1070, 1197
MseI	TTAA	6 cut(s)	288, 348, 368, 543, 881, 974
MslI	CAYNNNNRTG	5 cut(s)	552, 1362, 1377, 1821, 2388
Msp20I	TGGCCA	2 cut(s)	1070, 1197
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	1 cut(s)	1688
MspR9I	CCNGG	3 cut(s)	647, 995, 2082
MunI	CAATTG	1 cut(s)	1239
Mva1269I	GAATGC	4 cut(s)	346, 1120, 1171, 1513
MvaI	CCWGG	3 cut(s)	647, 995, 2082
NarI	GGCGCC	1 cut(s)	94
NcoI	CCATGG	2 cut(s)	1198, 1587
NdeII	GATC	8 cut(s)	262, 361, 778, 1255, 1447, 2014, 2111, 2176
NheI	GCTAGC	1 cut(s)	916
NlaIV	GGNNCC	6 cut(s)	95, 137, 1052, 1369, 1370, 1560
NmeAIII	GCCGAG	2 cut(s)	83, 334
NmuCI	GTSAC	6 cut(s)	232, 905, 1355, 1582, 1880, 2390
PagI	TCATGA	2 cut(s)	571, 1918
PasI	CCCWGGG	1 cut(s)	646
PceI	AGGCCT	1 cut(s)	1516
PciSI	GCTCTTC	1 cut(s)	2109
PctI	GAATGC	4 cut(s)	346, 1120, 1171, 1513
PdmI	GAANNNNTTC	2 cut(s)	1536, 2271
PfeI	GAWTC	9 cut(s)	30, 117, 998, 1336, 1676, 1813, 1861, 2353, 2371
PflMI	CCANNNNNTGG	1 cut(s)	1960
PleI	GAGTC	5 cut(s)	162, 202, 684, 1097, 1887
PluTI	GGCGCC	1 cut(s)	97
PmaCI	CACGTG	1 cut(s)	1121
PmlI	CACGTG	1 cut(s)	1121
PpsI	GAGTC	5 cut(s)	162, 202, 684, 1097, 1887
Ppu21I	YACGTR	3 cut(s)	1121, 1266, 1272
PpuMI	RGGWCCY	1 cut(s)	135
PshBI	ATTAAT	1 cut(s)	881
Psp124BI	GAGCTC	2 cut(s)	972, 2089
Psp5II	RGGWCCY	1 cut(s)	135
Psp6I	CCWGG	3 cut(s)	645, 993, 2080
PspCI	CACGTG	1 cut(s)	1121
PspEI	GGTNACC	1 cut(s)	905
PspFI	CCCAGC	3 cut(s)	37, 1738, 1985
PspGI	CCWGG	3 cut(s)	645, 993, 2080
PspN4I	GGNNCC	6 cut(s)	95, 137, 1052, 1369, 1370, 1560
PspOMI	GGGCCC	1 cut(s)	1368
PspPI	GGNCC	6 cut(s)	135, 1051, 1368, 1369, 1558, 1741
PspPPI	RGGWCCY	1 cut(s)	135
PsrI	GAACNNNNNNTAC	2 cut(s)	1397, 1429
PstI	CTGCAG	1 cut(s)	838
PsuI	RGATCY	2 cut(s)	361, 2014
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	4 cut(s)	1091, 1223, 1278, 1655
RsaNI	GTAC	4 cut(s)	1090, 1222, 1277, 1654
RseI	CAYNNNNRTG	5 cut(s)	552, 1362, 1377, 1821, 2388
SacI	GAGCTC	2 cut(s)	972, 2089
SapI	GCTCTTC	1 cut(s)	2109
SaqAI	TTAA	6 cut(s)	288, 348, 368, 543, 881, 974
Sau3AI	GATC	8 cut(s)	262, 361, 778, 1255, 1447, 2014, 2111, 2176
Sau96I	GGNCC	6 cut(s)	135, 1051, 1368, 1369, 1558, 1741
SchI	GAGTC	5 cut(s)	162, 202, 685, 1097, 1888
ScrFI	CCNGG	3 cut(s)	647, 995, 2082
SduI	GDGCHC	6 cut(s)	673, 972, 1183, 1372, 2089, 2104
SfaNI	GCATC	5 cut(s)	544, 556, 773, 996, 1443
SfcI	CTRYAG	1 cut(s)	834
SfoI	GGCGCC	1 cut(s)	95
SinI	GGWCC	2 cut(s)	135, 1051
SmiMI	CAYNNNNRTG	5 cut(s)	552, 1362, 1377, 1821, 2388
SmlI	CTYRAG	5 cut(s)	315, 701, 911, 1733, 2088
SmoI	CTYRAG	5 cut(s)	315, 701, 911, 1733, 2088
SnaBI	TACGTA	2 cut(s)	1266, 1272
Sse9I	AATT	8 cut(s)	310, 878, 1216, 1239, 1789, 1836, 1842, 2287
SseBI	AGGCCT	1 cut(s)	1516
SsiI	CCGC	6 cut(s)	156, 160, 177, 293, 991, 2071
SspDI	GGCGCC	1 cut(s)	93
SspMI	CTAG	6 cut(s)	521, 788, 917, 1434, 1553, 2357
SstI	GAGCTC	2 cut(s)	972, 2089
StuI	AGGCCT	1 cut(s)	1516
StyD4I	CCNGG	3 cut(s)	645, 993, 2080
StyI	CCWWGG	4 cut(s)	458, 1198, 1587, 1626
TaaI	ACNGT	2 cut(s)	193, 888
TaiI	ACGT	6 cut(s)	1023, 1123, 1190, 1268, 1274, 2203
TaqI	TCGA	3 cut(s)	206, 1110, 1131
TasI	AATT	8 cut(s)	310, 878, 1216, 1239, 1789, 1836, 1842, 2287
TatI	WGTACW	3 cut(s)	1089, 1221, 1276
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	9 cut(s)	30, 117, 998, 1336, 1676, 1813, 1861, 2353, 2371
Tru1I	TTAA	6 cut(s)	288, 348, 368, 543, 881, 974
Tru9I	TTAA	6 cut(s)	288, 348, 368, 543, 881, 974
TscAI	CASTG	1 cut(s)	600
TseFI	GTSAC	6 cut(s)	232, 905, 1355, 1582, 1880, 2390
TseI	GCWGC	9 cut(s)	5, 84, 473, 476, 536, 833, 1613, 1622, 2048
Tsp45I	GTSAC	6 cut(s)	232, 905, 1355, 1582, 1880, 2390
TspGWI	ACGGA	3 cut(s)	1374, 1570, 2378
TspRI	CASTG	1 cut(s)	600
Van91I	CCANNNNNTGG	1 cut(s)	1960
VpaK11BI	GGWCC	2 cut(s)	135, 1051
VspI	ATTAAT	1 cut(s)	881
XagI	CCTNNNNNAGG	2 cut(s)	491, 494
XapI	RAATTY	5 cut(s)	310, 1216, 1789, 1842, 2287
XmiI	GTMKAC	1 cut(s)	1268
XmnI	GAANNNNTTC	2 cut(s)	1536, 2271
XspI	CTAG	6 cut(s)	521, 788, 917, 1434, 1553, 2357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.