Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005788

Physical Location & Seq

Genomic Coordinates Reverse (-)

23449072 .. 23453358

Gene Structure 4287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g25600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2724 bp

ATGGCTGCACTGGCTCACGCCCTGCTCGGCGTTCCATCCCGTTGTGGTCTTTGCCGCGCCGTTAATCCCAAGGACAATTACAAGCTCTGCGGTTGGGGGTTTTCCAGAGCAATTGCTTGCTATGGAATCTCCATTTCTAGTGTTTCCACGAGGAAGAAGGATGGTGGTAATCTCACCGGCCCTTGGGCACTGAATGCAACTGACGCCCTCATCGTCGTCCACAATGCTACAGCTCGCACCACTGTGGAAATCCCCGTTACCTGTTATCAGCTTATTGGTGTTCCTGAACAAGCTGAAAAAGATGTGGTTGTTGAAGCAGTAATTGATTTGAAGAGTGCTAAAATTGATGAAGGTTACACCATGGATGCTATTAAATCTCGCAAGGACCTTCTAATGAACGTGAGAGAGAAGCTTATTTTTGAACCAGAATATGCTGGTAGTAAAAAGGAAAATATCCCACCTAAATCCTCCCTTCATATCCCTTGGGCATGGCTGCCAGCTGCTCTTTGCCTTCTTCAAGAGGTTGGGGAAGTAAAGCTTGTGCAAGACATTGGTCAGGCAGCTGTTCAGCATCCAGATGCTAAGCCGTTTACTCACGATCTTCTTCTTTCTATGGCACTAGCTGAGTGTGCAACTGCAAAAATTGGTTTTGAGAAGACCAAGGTGTCCCAAGGATTTGAAGCTCTTGCTCGTGCTCAGTGTCTTCTAAGGAGTAAAAAATCTCTTGAGAAAATATCGTTGTTATCTCAGATTGACAAAGCTAAAGCTGTATGTGAGTGTCTGATTGCATCAAAAGGTTCTGATCTGAAACTTGTGGAAGCTTTTTCTTTGTTCCTTCTTGGTGAGGGTAGTGAGGCTGCAATTGTTGAGAAGCTTCAGAAGCTTGATGTGGACAAAAATAAGTTAATACAATCTCTATGTAAACAAGGCAACCTCAAACAAGCCCTGCAGTTCCTTCCTCACGAGCCTAACCCCTCCCAACAGACCTATGAGCTCTTACTACTCTCTTGCACTCACCATAAGTCTCTCTCTGATGGGCTTGATGTGCATCGTCACATTGTTGATGGTGGGTGGGACCAAGACCCTTTCCTGGCCACCAAACTCATAGAGATGTACTCAGCATTGGACTCTATTGATAATGCACGTGAAGTGTTTGATAAAACTCGTAAAAGAACTATTTATATGTGGAATGCACTCTTCAGAGCTCTTACATTGGCGGGTCATGGAACTGAGGTGCTAGATTTGTATCGACAAATGAATACAGTTGGGATTTCGTCAGATCGGTTTACATATACATATGTGCTCAAAGCTTGTGTTGTTTCTGAGTGTTTGAGTTCACTCCTACAGAAGGGGAAGGAGATTCATGGACATATTTTGAAGAATGGATATGGGGCACATGTTCATGTTATGACCACTTTGTTGGATATGTATGCGAGGTTTGGGTGTGTTTTTTATGCTAGTAGTGTATTTGATCAGATGCAGATTAGAAATGTGGTTTCATGGAGTGCTATGATTGCATGCTATGCAAAGAATGGGAGGCCTTATGAAGCCTTGGAACTGTTTCGGGAAATGATACTTGAGGCCCAAGATTTGTTTCCCAATCCTGTCACAATGGTTAGTGTGCTTCAAGCTTGTGCAGCTCTTACTGCTTTGGAGCAGGGGAGGTTTATTCATGGATATATCCTCAGAAGAGGTCTTGATTCAATCCTTCCAGTTATGAGTGCTCTTATCACAATGTATGCGAGATGCGGTAAGCTTGACTTGGGGGAACGAGTTTTCAGTTTGATGAATAAGAAGGATGTTGTTTCGTGGAATTCCTTGATTTCTAGTTATGGCATTCATGGATACGGAAAAAAGGCAATTCAAATTTTTGAAGACATGATCAATCATGGAGTTTCACCAAGTCGCATTTCATTCGTTAGTGTCTTGGGGGCTTGTAGTCACGCGGGTCTTGTTGAAGAGGGGAAGATATTATTTAATTCTATGGTTAAAGAACATGGATTATATCCCAGTGTTGAGCACTATGCTTGTATGGTGGATCTTCTTGGTCGTGCCAATCGGTTAGATGAAGCAGCTAAAGTAATAGATAATATGCGGATTGAGCCAGGAGCTAAAGTTTGGGGTGCTCTTCTTGGATCATGTAGAATACATTGTAACGTTGAGCTGGCAGAGAGAGCAAGCAGAAGGCTATTTGAGCTTGAGCCTAGGAATGCTGGGAACTATGTACTTCTAGCTGATATTTATGCAGAAGCCAAGTTGTGGGATGATGTAAAAAGAGTGAAGAAGCATTTAGAAGCTCGAGAACTCCAAAAGGTCCCAGGTCGGAGTTGGATTGAAGTTAAAAGGAAGATATACTCATTCATATCCGTTGATGAGTTTAACCCACAGATGGAGCAGCTCCATGCATTGTTGGCTGAATTGTCAGCAGAGATGAAGGATCAAGGATATAAGCCGCAAACCAAAGTTGTCCTCTATGATCTCGATGAGGAAGAGAAGGAACGAATAGTGTTAGGCCATAGTGAAAAGTTAGCAGTTGCATTTGGACTCATAAATACCAAAAGAGGGGAAACTATTAGGATTTCCAAGAACTTAAGGTTATGTGAAGATTGTCACTCTGTTACGAAGTTCATTTCCAAATTCGCCAATAGAGAGATTCTGGTTCGAGATGTGAATCGGTTTCACCATTTCCGTGACGGGGTTTGTTCATGTGGAGATTATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0031425 GO:0031426 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

908

Amino Acids

101.35

Weight (kDa)

8.12

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46790
fragaria_vesca	FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510 FvH4_7g01510
malus_domestica	MD02G1305500.v1.1 MD07G1020200.v1.1
prunus_persica	Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1 Prupe.2G020600_v2.0.a1
pyrus_communis	pycom02g25600
rosa_chinensis	RchiOBHm_Chr1g0317361
rosa_laevigata	RLG00000029567 RLG00000030602 RLG00000030604
rosa_multiflora	Rmu_co8304249.1_g000001 Rmu_sc0005092.1_g000005 Rmu_sc0009583.1_g000011 Rmu_sc0032747.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330460 Rroxscaffold_4G00330470
rosa_rugosa	Rorug01G0016100
rosa_samantha	Rh1AG027400 Rh1BG023300 Rh1CG025400 Rh1DG045700
rosa_wichuraiana	Rw1G001930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	664
AccB7I	CCANNNNNTGG	1 cut(s)	2259
AccII	CGCG	2 cut(s)	57, 1946
AciI	CCGC	7 cut(s)	55, 90, 1217, 1749, 1946, 2095, 2453
AclI	AACGTT	1 cut(s)	2157
AclWI	GGATC	3 cut(s)	2046, 2143, 2445
AcoI	YGGCCR	1 cut(s)	1092
AcsI	RAATTY	3 cut(s)	1813, 1866, 2636
AcuI	CTGAAG	2 cut(s)	860, 1183
AcvI	CACGTG	1 cut(s)	1145
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	2 cut(s)	1115, 2226
AfiI	CCNNNNNNNGG	7 cut(s)	183, 1090, 1348, 2259, 2389, 2562, 2695
AflII	CTTAAG	1 cut(s)	2590
AflIII	ACRYGT	1 cut(s)	1396
AjnI	CCWGG	3 cut(s)	1089, 2104, 2317
AjuI	GAANNNNNNNTTGG	4 cut(s)	1578, 1610, 1894, 1926
AleI	CACNNNNGTG	1 cut(s)	242
Alw21I	GWGCWC	7 cut(s)	697, 996, 1207, 1305, 1726, 2022, 2128
Alw26I	GTCTC	1 cut(s)	1029
AlwI	GGATC	3 cut(s)	2046, 2143, 2445
Ama87I	CYCGRG	1 cut(s)	2298
AoxI	GGCC	5 cut(s)	178, 1092, 1538, 1581, 2512
ApeKI	GCWGC	8 cut(s)	5, 493, 500, 560, 857, 1637, 2072, 2395
ApoI	RAATTY	3 cut(s)	1813, 1866, 2636
Asp700I	GAANNNNTTC	1 cut(s)	1560
AspA2I	CCTAGG	1 cut(s)	2204
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	5 cut(s)	179, 385, 1075, 1582, 2314
AsuHPI	GGTGA	5 cut(s)	166, 854, 1007, 1890, 2672
AvaI	CYCGRG	1 cut(s)	2298
AvaII	GGWCC	3 cut(s)	385, 1075, 2314
AvrII	CCTAGG	1 cut(s)	2204
BaeGI	GKGCMC	2 cut(s)	190, 1396
BalI	TGGCCA	1 cut(s)	1094
BanII	GRGCYC	2 cut(s)	996, 1207
BauI	CACGAG	3 cut(s)	148, 690, 962
BbrPI	CACGTG	1 cut(s)	1145
BbsI	GAAGAC	3 cut(s)	662, 695, 1881
Bbv12I	GWGCWC	7 cut(s)	697, 996, 1207, 1305, 1726, 2022, 2128
BbvI	GCAGC	7 cut(s)	480, 487, 572, 844, 1649, 2084, 2407
BccI	CCATC	5 cut(s)	43, 155, 1028, 1058, 2383
BceAI	ACGGC	2 cut(s)	44, 571
BcgI	CGANNNNNNTGC	2 cut(s)	1897, 1931
BciT130I	CCWGG	3 cut(s)	1091, 2106, 2319
BciVI	GTATCC	1 cut(s)	1838
BclI	TGATCA	2 cut(s)	1471, 1881
BcoDI	GTCTC	1 cut(s)	1029
BfaI	CTAG	7 cut(s)	138, 620, 1238, 1458, 1827, 2205, 2231
BfmI	CTRYAG	3 cut(s)	228, 947, 1343
BfrI	CTTAAG	1 cut(s)	2590
BfuI	GTATCC	1 cut(s)	1838
BlnI	CCTAGG	1 cut(s)	2204
BlpI	GCTNAGC	1 cut(s)	582
Bme1390I	CCNGG	3 cut(s)	1091, 2106, 2319
Bme18I	GGWCC	3 cut(s)	385, 1075, 2314
BmeT110I	CYCGRG	1 cut(s)	2298
BmgT120I	GGNCC	5 cut(s)	179, 385, 1075, 1582, 2314
BmiI	GGNNCC	2 cut(s)	1076, 2316
BmrFI	CCNGG	3 cut(s)	1091, 2106, 2319
BmrI	ACTGGG	1 cut(s)	2004
BmsI	GCATC	7 cut(s)	355, 568, 580, 797, 1057, 1467, 1736
BmuI	ACTGGG	1 cut(s)	2004
BoxI	GACNNNNGTC	1 cut(s)	552
BpiI	GAAGAC	3 cut(s)	662, 695, 1881
BplI	GAGNNNNNCTC	2 cut(s)	1100, 1132
Bpu1102I	GCTNAGC	1 cut(s)	582
BpuEI	CTTGAG	3 cut(s)	746, 1598, 2219
BsaAI	YACGTR	1 cut(s)	1145
BsaBI	GATNNNNATC	3 cut(s)	1047, 1245, 2670
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	9 cut(s)	69, 182, 360, 482, 660, 670, 1551, 2204, 2317
BsaXI	ACNNNNNCTCC	2 cut(s)	2100, 2130
Bsc4I	CCNNNNNNNGG	7 cut(s)	183, 1090, 1348, 2259, 2389, 2562, 2695
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	3 cut(s)	15, 1712, 2010
Bse8I	GATNNNNATC	3 cut(s)	1047, 1245, 2670
BseBI	CCWGG	3 cut(s)	1091, 2106, 2319
BseDI	CCNNGG	9 cut(s)	69, 182, 360, 482, 660, 670, 1551, 2204, 2317
BseGI	GGATG	6 cut(s)	35, 166, 370, 571, 1804, 2269
BseJI	GATNNNNATC	3 cut(s)	1047, 1245, 2670
BseLI	CCNNNNNNNGG	7 cut(s)	183, 1090, 1348, 2259, 2389, 2562, 2695
BseMII	CTCAG	7 cut(s)	615, 710, 761, 1131, 1221, 1314, 1699
BseNI	ACTGG	3 cut(s)	15, 1712, 2010
BseSI	GKGCMC	2 cut(s)	190, 1396
BseXI	GCAGC	7 cut(s)	480, 487, 572, 844, 1649, 2084, 2407
BseYI	CCCAGC	1 cut(s)	2213
BsgI	GTGCAG	1 cut(s)	1656
Bsh1236I	CGCG	2 cut(s)	57, 1946
BshFI	GGCC	5 cut(s)	180, 1094, 1540, 1583, 2514
BsiHKAI	GWGCWC	7 cut(s)	697, 996, 1207, 1305, 1726, 2022, 2128
BsiHKCI	CYCGRG	1 cut(s)	2298
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	3 cut(s)	652, 1088, 2300
BslI	CCNNNNNNNGG	7 cut(s)	183, 1090, 1348, 2259, 2389, 2562, 2695
BsmAI	GTCTC	1 cut(s)	1029
BsmFI	GGGAC	3 cut(s)	652, 1088, 2300
BsmI	GAATGC	4 cut(s)	199, 1195, 1836, 2215
BsnI	GGCC	5 cut(s)	180, 1094, 1540, 1583, 2514
BsoBI	CYCGRG	1 cut(s)	2298
Bsp1286I	GDGCHC	9 cut(s)	190, 697, 996, 1207, 1305, 1396, 1726, 2022, 2128
Bsp143I	GATC	9 cut(s)	598, 802, 1279, 1471, 1881, 2038, 2135, 2437, 2476
Bsp1720I	GCTNAGC	1 cut(s)	582
Bsp19I	CCATGG	1 cut(s)	360
BspACI	CCGC	7 cut(s)	55, 90, 1217, 1749, 1946, 2095, 2453
BspANI	GGCC	5 cut(s)	180, 1094, 1540, 1583, 2514
BspCNI	CTCAG	7 cut(s)	616, 709, 760, 1130, 1222, 1315, 1698
BspFNI	CGCG	2 cut(s)	57, 1946
BspLI	GGNNCC	2 cut(s)	1076, 2316
BspMAI	CTGCAG	1 cut(s)	951
BspPI	GGATC	3 cut(s)	2046, 2143, 2445
BspQI	GCTCTTC	1 cut(s)	2133
BspTI	CTTAAG	1 cut(s)	2590
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	3 cut(s)	15, 1712, 2010
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	9 cut(s)	69, 182, 360, 482, 660, 670, 1551, 2204, 2317
BssMI	GATC	9 cut(s)	598, 802, 1279, 1471, 1881, 2038, 2135, 2437, 2476
BssNI	GRCGYC	1 cut(s)	204
BssSI	CACGAG	3 cut(s)	148, 690, 962
BssT1I	CCWWGG	8 cut(s)	69, 182, 360, 482, 660, 670, 1551, 2204
Bst2BI	CACGAG	3 cut(s)	148, 690, 962
Bst2UI	CCWGG	3 cut(s)	1091, 2106, 2319
Bst4CI	ACNGT	3 cut(s)	244, 1264, 1560
Bst6I	CTCTTC	6 cut(s)	326, 1202, 1684, 1953, 2133, 2484
BstACI	GRCGYC	1 cut(s)	204
BstAFI	CTTAAG	1 cut(s)	2590
BstAPI	GCANNNNNTGC	2 cut(s)	194, 1523
BstBAI	YACGTR	1 cut(s)	1145
BstC8I	GCNNGC	6 cut(s)	118, 235, 498, 1519, 2166, 2179
BstDEI	CTNAG	9 cut(s)	582, 624, 696, 707, 747, 1117, 1230, 1323, 1685
BstDSI	CCRYGG	1 cut(s)	360
BstENI	CCTNNNNNAGG	1 cut(s)	1346
BstF5I	GGATG	6 cut(s)	35, 166, 370, 571, 1804, 2269
BstFNI	CGCG	2 cut(s)	57, 1946
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	9 cut(s)	601, 805, 1282, 1474, 1884, 2041, 2138, 2440, 2479
BstMAI	GTCTC	1 cut(s)	1029
BstMBI	GATC	9 cut(s)	598, 802, 1279, 1471, 1881, 2038, 2135, 2437, 2476
BstNI	CCWGG	3 cut(s)	1091, 2106, 2319
BstNSI	RCATGY	2 cut(s)	1400, 1521
BstPAI	GACNNNNGTC	1 cut(s)	552
BstSCI	CCNGG	3 cut(s)	1089, 2104, 2317
BstSFI	CTRYAG	3 cut(s)	228, 947, 1343
BstSLI	GKGCMC	2 cut(s)	190, 1396
BstUI	CGCG	2 cut(s)	57, 1946
BstV1I	GCAGC	7 cut(s)	480, 487, 572, 844, 1649, 2084, 2407
BstV2I	GAAGAC	3 cut(s)	662, 695, 1881
BstX2I	RGATCY	1 cut(s)	2038
BstXI	CCANNNNNNTGG	1 cut(s)	1420
BstYI	RGATCY	1 cut(s)	2038
BsuI	GTATCC	1 cut(s)	1838
BsuRI	GGCC	5 cut(s)	180, 1094, 1540, 1583, 2514
BtgI	CCRYGG	1 cut(s)	360
BtsCI	GGATG	6 cut(s)	35, 166, 370, 571, 1804, 2269
BtsIMutI	CAGTG	5 cut(s)	8, 188, 240, 704, 2017
Cac8I	GCNNGC	6 cut(s)	118, 235, 498, 1519, 2166, 2179
CfoI	GCGC	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	5 cut(s)	179, 385, 1075, 1582, 2314
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	1114, 2225
CviQI	GTAC	2 cut(s)	1114, 2225
DdeI	CTNAG	9 cut(s)	582, 624, 696, 707, 747, 1117, 1230, 1323, 1685
DpnI	GATC	9 cut(s)	600, 804, 1281, 1473, 1883, 2040, 2137, 2439, 2478
DpnII	GATC	9 cut(s)	598, 802, 1279, 1471, 1881, 2038, 2135, 2437, 2476
DrdI	GACNNNNNNGTC	1 cut(s)	664
DseDI	GACNNNNNNGTC	1 cut(s)	664
EaeI	YGGCCR	1 cut(s)	1092
Eam1104I	CTCTTC	6 cut(s)	326, 1202, 1684, 1953, 2133, 2484
EarI	CTCTTC	6 cut(s)	326, 1202, 1684, 1953, 2133, 2484
Ecl136II	GAGCTC	2 cut(s)	994, 1205
Eco130I	CCWWGG	8 cut(s)	69, 182, 360, 482, 660, 670, 1551, 2204
Eco147I	AGGCCT	1 cut(s)	1540
Eco24I	GRGCYC	2 cut(s)	996, 1207
Eco47I	GGWCC	3 cut(s)	385, 1075, 2314
Eco53kI	GAGCTC	2 cut(s)	994, 1205
Eco57I	CTGAAG	2 cut(s)	860, 1183
Eco72I	CACGTG	1 cut(s)	1145
Eco88I	CYCGRG	1 cut(s)	2298
EcoICRI	GAGCTC	2 cut(s)	994, 1205
EcoNI	CCTNNNNNAGG	1 cut(s)	1346
EcoO109I	RGGNCCY	2 cut(s)	385, 2314
EcoRI	GAATTC	1 cut(s)	1813
EcoRII	CCWGG	3 cut(s)	1089, 2104, 2317
EcoT14I	CCWWGG	8 cut(s)	69, 182, 360, 482, 660, 670, 1551, 2204
EcoT22I	ATGCAT	1 cut(s)	2407
EcoT38I	GRGCYC	2 cut(s)	996, 1207
ErhI	CCWWGG	8 cut(s)	69, 182, 360, 482, 660, 670, 1551, 2204
FalI	AAGNNNNNCTT	4 cut(s)	522, 554, 1745, 1777
FaqI	GGGAC	3 cut(s)	652, 1088, 2300
FauI	CCCGC	2 cut(s)	1210, 1939
FauNDI	CATATG	1 cut(s)	1297
FbaI	TGATCA	2 cut(s)	1471, 1881
FokI	GGATG	6 cut(s)	22, 173, 377, 558, 1811, 2276
FriOI	GRGCYC	2 cut(s)	996, 1207
FspBI	CTAG	7 cut(s)	138, 620, 1238, 1458, 1827, 2205, 2231
GlaI	GCGC	1 cut(s)	58
GsaI	CCCAGC	1 cut(s)	2217
HaeIII	GGCC	5 cut(s)	180, 1094, 1540, 1583, 2514
HapII	CCGG	1 cut(s)	177
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	204
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HindIII	AAGCTT	8 cut(s)	410, 536, 819, 872, 881, 1308, 1629, 1754
HinfI	GANTC	7 cut(s)	126, 1127, 1360, 1700, 2544, 2653, 2671
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	5 cut(s)	166, 854, 1007, 1890, 2672
Hpy166II	GTNNAC	6 cut(s)	220, 591, 892, 923, 1287, 1337
Hpy8I	GTNNAC	6 cut(s)	220, 591, 892, 923, 1287, 1337
Hpy99I	CGWCG	1 cut(s)	218
HpyCH4III	ACNGT	3 cut(s)	244, 1264, 1560
HpyCH4IV	ACGT	3 cut(s)	399, 1144, 2157
HpyF3I	CTNAG	9 cut(s)	582, 624, 696, 707, 747, 1117, 1230, 1323, 1685
HpySE526I	ACGT	3 cut(s)	399, 1144, 2157
Hsp92I	GRCGYC	1 cut(s)	204
HspAI	GCGC	1 cut(s)	57
Ksp22I	TGATCA	2 cut(s)	1471, 1881
Kzo9I	GATC	9 cut(s)	598, 802, 1279, 1471, 1881, 2038, 2135, 2437, 2476
LguI	GCTCTTC	1 cut(s)	2133
LmnI	GCTCC	4 cut(s)	1654, 2108, 2392, 2403
Lsp1109I	GCAGC	7 cut(s)	480, 487, 572, 844, 1649, 2084, 2407
LweI	GCATC	7 cut(s)	355, 568, 580, 797, 1057, 1467, 1736
MaeI	CTAG	7 cut(s)	138, 620, 1238, 1458, 1827, 2205, 2231
MaeII	ACGT	3 cut(s)	399, 1144, 2157
MaeIII	GTNAC	9 cut(s)	256, 353, 1052, 1606, 1940, 2153, 2609, 2617, 2690
MalI	GATC	9 cut(s)	600, 804, 1281, 1473, 1883, 2040, 2137, 2439, 2478
MboI	GATC	9 cut(s)	598, 802, 1279, 1471, 1881, 2038, 2135, 2437, 2476
MfeI	CAATTG	2 cut(s)	111, 861
MflI	RGATCY	1 cut(s)	2038
MhlI	GDGCHC	9 cut(s)	190, 697, 996, 1207, 1305, 1396, 1726, 2022, 2128
MlsI	TGGCCA	1 cut(s)	1094
MluNI	TGGCCA	1 cut(s)	1094
MlyI	GAGTC	2 cut(s)	1121, 2538
MmeI	TCCRAC	3 cut(s)	1401, 2303, 2309
Mox20I	TGGCCA	1 cut(s)	1094
Mph1103I	ATGCAT	1 cut(s)	2407
MroXI	GAANNNNTTC	1 cut(s)	1560
MscI	TGGCCA	1 cut(s)	1094
MseI	TTAA	8 cut(s)	63, 372, 905, 1977, 1989, 2340, 2379, 2591
MslI	CAYNNNNRTG	5 cut(s)	242, 576, 1109, 1401, 2688
Msp20I	TGGCCA	1 cut(s)	1094
MspA1I	CMGCKG	2 cut(s)	500, 563
MspCI	CTTAAG	1 cut(s)	2590
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	3 cut(s)	1091, 2106, 2319
MunI	CAATTG	2 cut(s)	111, 861
Mva1269I	GAATGC	4 cut(s)	199, 1195, 1836, 2215
MvaI	CCWGG	3 cut(s)	1091, 2106, 2319
MvnI	CGCG	2 cut(s)	57, 1946
NcoI	CCATGG	1 cut(s)	360
NdeI	CATATG	1 cut(s)	1297
NdeII	GATC	9 cut(s)	598, 802, 1279, 1471, 1881, 2038, 2135, 2437, 2476
NlaIV	GGNNCC	2 cut(s)	1076, 2316
NmeAIII	GCCGAG	1 cut(s)	6
NmuCI	GTSAC	5 cut(s)	1052, 1606, 1940, 2609, 2690
NsiI	ATGCAT	1 cut(s)	2407
NspI	RCATGY	2 cut(s)	1400, 1521
OliI	CACNNNNGTG	1 cut(s)	242
PaeI	GCATGC	1 cut(s)	1521
PaeR7I	CTCGAG	1 cut(s)	2298
PceI	AGGCCT	1 cut(s)	1540
PciI	ACATGT	1 cut(s)	1396
PciSI	GCTCTTC	1 cut(s)	2133
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PctI	GAATGC	4 cut(s)	199, 1195, 1836, 2215
PdmI	GAANNNNTTC	1 cut(s)	1560
PfeI	GAWTC	5 cut(s)	126, 1360, 1700, 2653, 2671
PflMI	CCANNNNNTGG	1 cut(s)	2259
PleI	GAGTC	2 cut(s)	1121, 2538
PmaCI	CACGTG	1 cut(s)	1145
PmlI	CACGTG	1 cut(s)	1145
PpsI	GAGTC	2 cut(s)	1121, 2538
Ppu21I	YACGTR	1 cut(s)	1145
PpuMI	RGGWCCY	2 cut(s)	385, 2314
PscI	ACATGT	1 cut(s)	1396
PshAI	GACNNNNGTC	1 cut(s)	552
Psp124BI	GAGCTC	2 cut(s)	996, 1207
Psp1406I	AACGTT	1 cut(s)	2157
Psp5II	RGGWCCY	2 cut(s)	385, 2314
Psp6I	CCWGG	3 cut(s)	1089, 2104, 2317
PspCI	CACGTG	1 cut(s)	1145
PspFI	CCCAGC	1 cut(s)	2213
PspGI	CCWGG	3 cut(s)	1089, 2104, 2317
PspN4I	GGNNCC	2 cut(s)	1076, 2316
PspPI	GGNCC	5 cut(s)	179, 385, 1075, 1582, 2314
PspPPI	RGGWCCY	2 cut(s)	385, 2314
PstI	CTGCAG	1 cut(s)	951
PsuI	RGATCY	1 cut(s)	2038
PvuII	CAGCTG	2 cut(s)	500, 563
RsaI	GTAC	2 cut(s)	1115, 2226
RsaNI	GTAC	2 cut(s)	1114, 2225
RseI	CAYNNNNRTG	5 cut(s)	242, 576, 1109, 1401, 2688
SacI	GAGCTC	2 cut(s)	996, 1207
SapI	GCTCTTC	1 cut(s)	2133
SaqAI	TTAA	8 cut(s)	63, 372, 905, 1977, 1989, 2340, 2379, 2591
Sau3AI	GATC	9 cut(s)	598, 802, 1279, 1471, 1881, 2038, 2135, 2437, 2476
Sau96I	GGNCC	5 cut(s)	179, 385, 1075, 1582, 2314
SchI	GAGTC	2 cut(s)	1121, 2538
ScrFI	CCNGG	3 cut(s)	1091, 2106, 2319
SduI	GDGCHC	9 cut(s)	190, 697, 996, 1207, 1305, 1396, 1726, 2022, 2128
SfaNI	GCATC	7 cut(s)	355, 568, 580, 797, 1057, 1467, 1736
SfcI	CTRYAG	3 cut(s)	228, 947, 1343
Sfr274I	CTCGAG	1 cut(s)	2298
SinI	GGWCC	3 cut(s)	385, 1075, 2314
SlaI	CTCGAG	1 cut(s)	2298
SmiMI	CAYNNNNRTG	5 cut(s)	242, 576, 1109, 1401, 2688
SmlI	CTYRAG	5 cut(s)	725, 1577, 2198, 2298, 2590
SmoI	CTYRAG	5 cut(s)	725, 1577, 2198, 2298, 2590
SphI	GCATGC	1 cut(s)	1521
SseBI	AGGCCT	1 cut(s)	1540
SsiI	CCGC	7 cut(s)	55, 90, 1217, 1749, 1946, 2095, 2453
SspMI	CTAG	7 cut(s)	138, 620, 1238, 1458, 1827, 2205, 2231
SstI	GAGCTC	2 cut(s)	996, 1207
StuI	AGGCCT	1 cut(s)	1540
StyD4I	CCNGG	3 cut(s)	1089, 2104, 2317
StyI	CCWWGG	8 cut(s)	69, 182, 360, 482, 660, 670, 1551, 2204
TaaI	ACNGT	3 cut(s)	244, 1264, 1560
TaiI	ACGT	3 cut(s)	402, 1147, 2160
TaqI	TCGA	4 cut(s)	1249, 2299, 2481, 2662
TatI	WGTACW	2 cut(s)	1113, 2224
TauI	GCSGC	2 cut(s)	57, 2455
TfiI	GAWTC	5 cut(s)	126, 1360, 1700, 2653, 2671
Tru1I	TTAA	8 cut(s)	63, 372, 905, 1977, 1989, 2340, 2379, 2591
Tru9I	TTAA	8 cut(s)	63, 372, 905, 1977, 1989, 2340, 2379, 2591
TscAI	CASTG	5 cut(s)	15, 195, 247, 704, 2017
TseFI	GTSAC	5 cut(s)	1052, 1606, 1940, 2609, 2690
TseI	GCWGC	8 cut(s)	5, 493, 500, 560, 857, 1637, 2072, 2395
Tsp45I	GTSAC	5 cut(s)	1052, 1606, 1940, 2609, 2690
TspGWI	ACGGA	3 cut(s)	1863, 2356, 2678
TspRI	CASTG	5 cut(s)	15, 195, 247, 704, 2017
Van91I	CCANNNNNTGG	1 cut(s)	2259
Vha464I	CTTAAG	1 cut(s)	2590
VpaK11BI	GGWCC	3 cut(s)	385, 1075, 2314
XagI	CCTNNNNNAGG	1 cut(s)	1346
XapI	RAATTY	3 cut(s)	1813, 1866, 2636
XceI	RCATGY	2 cut(s)	1400, 1521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2325
XhoI	CTCGAG	1 cut(s)	2298
XmaJI	CCTAGG	1 cut(s)	2204
XmnI	GAANNNNTTC	1 cut(s)	1560
XspI	CTAG	7 cut(s)	138, 620, 1238, 1458, 1827, 2205, 2231
Zsp2I	ATGCAT	1 cut(s)	2407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.